The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.
eccode
Local identifiers in Enzyme Commission Code should match this
regular expression:
^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$
Compact URIs (CURIEs) constructed from Enzyme Commission Code should match
this regular expression:
^eccode:\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$
A summary of the relations in the Bioregistry schema can be found here.
The metaregistry provides mappings between the Bioregistry and other registries. There are 14 mappings to external registries for this resource with 11 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BARTOC | bartoc |
671
|
|
BioContext | biocontext |
EC-CODE
|
|
EDAM | edam |
1011
|
|
FAIRSharing | fairsharing |
FAIRsharing.rfLD2u
|
|
GO | go |
EC
|
|
Integbio | integbio |
nbdc00508
|
|
Identifiers.org | miriam |
ec-code
|
|
N2T | n2t |
ec-code
|
|
Pathguide | pathguide |
106
|
|
Prefix Commons | prefixcommons |
intenz
|
|
re3data | re3data |
r3d100010803
|
|
TogoID | togoid |
Ec
|
|
UniProt | uniprot |
DB-0024
|
|
Wikidata | wikidata |
P591
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 1.1.1.1
is used to demonstrate the providers
available for Enzyme Commission Code. A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
Enzyme Commission Code | eccode |
https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=1.1.1.1 |
Bioregistry | bioregistry |
https://bioregistry.io/eccode:1.1.1.1 |
Identifiers.org | miriam |
https://identifiers.org/ec-code:1.1.1.1 |
Name-to-Thing | n2t |
https://n2t.net/ec-code:1.1.1.1 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
Code | Name | URL |
---|---|---|
CURATOR_REVIEW |
KEGG Ligand Database for Enzyme Nomenclature | https://www.genome.jp/dbget-bin/www_bget?ec:1.1.1.1 |
bio2rdf |
Bio2RDF | http://bio2rdf.org/intenz:1.1.1.1 |
enzymeportal |
Enzyme Portal through EMBL-EBI | https://www.ebi.ac.uk/enzymeportal/ec/1.1.1.1 |
expasy |
Enzyme nomenclature database, ExPASy (Expert Protein Analysis System) | https://enzyme.expasy.org/EC/1.1.1.1 |
expenz |
ExploreEnz at Trinity College | http://www.enzyme-database.org/query.php?ec=1.1.1.1 |