Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.

Comment website down as of 2021-10-04

Prefix
cubedb
Links
Homepage
Contact
Missing Contact
Pattern
^[A-Za-z_0-9]+$
Namespace in Pattern
False
Example Identifier
AKR   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for cubedb.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam cubedb
Name-to-Thing n2t cubedb
Prefix Commons prefixcommons CUBEDB
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE cubedb:AKR is used to demonstrate the provides available for cubedb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
Cube db cubedb http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/AKR/
Bioregistry bioregistry https://bioregistry.io/cubedb:AKR
Identifiers.org miriam https://identifiers.org/cubedb:AKR
Name-to-Thing n2t https://n2t.net/cubedb:AKR