This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.

Prefix
caloha
Keywords
anatomy human ontology physiology
License
CC-BY-4.0
Links
Homepage Repository OBO @neXtProt_news
Contact
Paula Duek Roggli   0000-0002-0819-0473   paulacalipho
Pattern for Local Unique Identifiers

Local identifiers in CALIPHO Group Ontology of Human Anatomy should match this regular expression:
^TS-\d+$

Example Local Unique Identifier
TS-0001   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from CALIPHO Group Ontology of Human Anatomy should match this regular expression:
^caloha:TS-\d+$

Example CURIE
caloha:TS-0001
References
Contributors
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE caloha:TS-0001 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
CALIPHO Group Ontology of Human Anatomy caloha https://www.nextprot.org/term/TS-0001
Bioregistry bioregistry https://bioregistry.io/caloha:TS-0001
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
biopragmatics Biopragmatics Browser https://biopragmatics.github.io/providers/caloha/TS-0001