BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.

Prefix
biomodels.db
Alternative Prefixes
BIOMD
Links
Homepage
Contact
Missing Contact
Pattern
^((BIOMD|MODEL)\d{10})|(BMID\d{12})$
Namespace in Pattern
False
Example Identifier
BIOMD0000000048   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for biomodels.db.

Registry Name Metaprefix Metaidentifier
Gene Ontology Registry go BIOMD
Identifiers.org miriam biomodels.db
Name-to-Thing n2t biomodels.db
Prefix Commons prefixcommons BIOMODELS.DB
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE biomodels.db:BIOMD0000000048 is used to demonstrate the provides available for biomodels.db. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
BioModels Database biomodels.db https://www.ebi.ac.uk/biomodels/BIOMD0000000048
Bioregistry bioregistry https://bioregistry.io/biomodels.db:BIOMD0000000048
Identifiers.org miriam https://identifiers.org/biomodels.db:BIOMD0000000048
Name-to-Thing n2t https://n2t.net/biomodels.db:BIOMD0000000048
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
CURATOR_REVIEW Caltech mirror http://biomodels.caltech.edu/BIOMD0000000048
omicsdi BioModels through OmicsDI https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048