BioCompute is shorthand for the IEEE 2791-2020 standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to facilitate communication. This pipeline documentation approach has been adopted by a few FDA centers. The goal is to ease the communication burdens between research centers, organizations, and industries. This web portal allows users to build a BioCompute Objects through the interface in a human and machine readable format.

Prefix

biocompute

Links

Homepage Repository

Contact

Raja Mazumder   0000-0001-8823-9945

Pattern for Local Unique Identifiers

Local identifiers in Biocompute Object should match this regular expression:
^\d+$

Example Local Unique Identifier

000001   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Biocompute Object should match this regular expression:
^biocompute:\d+$

Example CURIE

biocompute:000001

Publications

2017 BioCompute objects - a step towards evaluation and validation of bio-medical scientific computations

Contributors

• submitter Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 000001 is used to demonstrate the providers available for Biocompute Object. A guide for curating additional providers can be found here.