BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.

Prefix
bigg.compartment
Links
Homepage
Contact
Missing Contact
Pattern
^[a-z_A-Z]+$
Namespace in Pattern
False
Example Identifier
c   Resolve
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for bigg.compartment.

Registry Name Metaprefix Metaidentifier
Identifiers.org miriam bigg.compartment
Name-to-Thing n2t bigg.compartment
Prefix Commons prefixcommons BIGG.COMPARTMENT
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE bigg.compartment:c is used to demonstrate the provides available for bigg.compartment. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URL
BiGG Compartment bigg.compartment http://bigg.ucsd.edu/compartments/c
Bioregistry bioregistry https://bioregistry.io/bigg.compartment:c
Identifiers.org miriam https://identifiers.org/bigg.compartment:c
Name-to-Thing n2t https://n2t.net/bigg.compartment:c