The AOPO provides classes and relationships for the semantic representation of the Adverse Outcome Pathway framework.

Comment

There's no associated primary publication to my knowledge. The class and property CURIE format strings are somewhat inconsistent, but all conform to http://aopkb.org/aop_ontology#AdverseOutcomePathway, http://aopkb.org/aop_ontology#has_key_event or http://aopkb.org/aop_ontology#hasProcess. It is not indexed in the OLS but supports the AOP-WIKI RDF (see https://doi.org/10.1089/aivt.2021.0010 or https://aopwiki.rdf.bigcat-bioinformatics.org/).

Prefix

aopo

Keywords

adverse outcome pathway ontology

License

Apache-2.0

Links

Homepage Repository OWL Request Discussion

Contact

Lyle Burgoon   0000-0003-4977-5352   DataSciBurgoon

Pattern for Local Unique Identifiers

Local identifiers in Adverse Outcome Pathway Ontology should match this regular expression:
^[A-Za-z_]+$

Example Local Unique Identifier

AdverseOutcomePathway   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Adverse Outcome Pathway Ontology should match this regular expression:
^aopo:[A-Za-z_]+$

Example CURIE

aopo:AdverseOutcomePathway

Publications

2017 Creating a Structured Adverse Outcome Pathway Knowledgebase via Ontology-Based Annotations

Contributors

• submitter Javier Millán Acosta   0000-0001-5608-781X   jmillanacosta

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier AdverseOutcomePathway is used to demonstrate the providers available for Adverse Outcome Pathway Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.