Gene

sorbs1

ID
ZDB-GENE-090313-168
Name
sorbin and SH3 domain containing 1
Symbol
sorbs1 Nomenclature History
Previous Names
  • cb01g02
  • si:dkey-103j14.2 (1)
Type
protein_coding_gene
Location
Chr: 13 Mapping Details/Browsers
Description
null
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa1288Allele with one point mutationUnknownPremature StopENU
sa11347Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa17635Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
ulb29Allele with one deletionUnknownUnknownCRISPR
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-sorbs1Veloso et al., 2024
MO1-sorbs1N/AVeloso et al., 2024
MO2-sorbs1N/AVeloso et al., 2024
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Human Disease
Associated With sorbs1 Human Ortholog
No data available
Associated With sorbs1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001452 SH3 domain
Domain IPR003127 SoHo domain
Family IPR050384 Endophilin/SH3RF
Homologous_superfamily IPR036028 SH3-like domain superfamily
Repeat IPR000408 Regulator of chromosome condensation, RCC1
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Domain Details Per Protein
Protein Additional Resources Length Endophilin/SH3RF Regulator of chromosome condensation, RCC1 SH3 domain SH3-like domain superfamily SoHo domain
UniProtKB:A0A8M6Z435 InterPro 1059
UniProtKB:A0A8M6Z9S5 InterPro 1009
UniProtKB:A0A8M9PFI6 InterPro 533
UniProtKB:A0A8M9PFJ2 InterPro 472
UniProtKB:A0A8M9PSG3 InterPro 512
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 13
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA sorbs1-202 (1)
Ensembl
Ensembl 6,034 nt
ZFIN BLAST
mRNA sorbs1-203 (1)
Ensembl
Ensembl 579 nt
ZFIN BLAST
mRNA sorbs1-204 (1)
Ensembl
Ensembl 582 nt
ZFIN BLAST
mRNA sorbs1-205 (1)
Ensembl
Ensembl 571 nt
ZFIN BLAST
ncRNA sorbs1-008 (1)
Ensembl
Ensembl 619 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-103J14ZFIN Curated Data
Contained inBACDKEY-226B20ZFIN Curated Data
EncodesESTcb01g02ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_068213040 (1)8156 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicRefSeq:NW_018395309 (1)375908 nt
MegaBLAST
PolypeptideUniProtKB:A0A8M9QFZ8 (1)1064 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSORBS110
Amino acid sequence comparison (1)
MouseSorbs119
Amino acid sequence comparison (1)
Citations
TSV
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Your Input Welcome
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