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Scopus Author ID: 35345635900
Loop profile: 1204262

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Employment (5)

Universita degli Studi di Roma La Sapienza Dipartimento di Biologia e Biotecnologie Charles Darwin: Roma, Lazio, IT

2022-10-14 to present | Assistant Professor (RTDB) (Department of Biology and Biotechnology Charles Darwin)
Employment
Source: Self-asserted source
Livia Perfetto

Fondazione Human Technopole: Milan, IT

2020-11-01 to present | SIGNOR database coordinator and curator (SIGNOR resource)
Employment
Source: Self-asserted source
Livia Perfetto

European Bioinformatics Institute: Cambridge, Cambridgeshire, GB

2017-11-01 to 2020-10-31 | bioinformatician and database curator (Molecular Interaction team)
Employment
Source: Self-asserted source
Livia Perfetto

Universita degli Studi di Roma Tor Vergata: Roma, Lazio, IT

2016-04-01 to 2017-12-31 | AIRC post-doctoral fellow (Biology)
Employment
Source: Self-asserted source
Livia Perfetto

Universita degli Studi di Roma Tor Vergata: Roma, Lazio, IT

2014-04-01 to 2016-04-01 | ERC Post-doctoral fellow (Biology)
Employment
Source: Self-asserted source
Livia Perfetto

Education and qualifications (3)

Universita degli Studi di Roma Tor Vergata: Roma, Lazio, IT

2010-11-01 to 2014-04-16 | PhD (Biology)
Education
Source: Self-asserted source
Livia Perfetto

Università degli Studi di Roma Tor Vergata: Roma, Lazio, IT

2007-10-01 to 2010-03-11 | Laurea Magistrale (Master-degree) (Biology)
Education
Source: Self-asserted source
Livia Perfetto

Università degli Studi di Roma Tor Vergata : Roma, Lazio, IT

2004-10-01 to 2007-07-19 | Laurea Triennale (Bachelor-degree) (Biology)
Education
Source: Self-asserted source
Livia Perfetto

Works (45)

NetworkCommons: bridging data, knowledge, and methods to build and evaluate context-specific biological networks

Bioinformatics
2025-02-04 | Journal article
DOI: 10.1093/bioinformatics/btaf048
Contributors: Victor Paton; Denes Türei; Olga Ivanova; Sophia Müller-Dott; Pablo Rodriguez-Mier; Veronica Venafra; Livia Perfetto; Martin Garrido-Rodriguez; Julio Saez-Rodriguez; Jianlin Cheng
Source: check_circle
Crossref

NetworkCommons: bridging data, knowledge and methods to build and evaluate context-specific biological networks

2024-11-25 | Preprint
DOI: 10.1101/2024.11.22.624823
Contributors: Victor Paton; Denes Türei; Olga Ivanova; Sophia Müller-Dott; Pablo Rodriguez-Mier; Veronica Venafra; Livia Perfetto; Martin Garrido-Rodriguez; Julio Saez-Rodriguez
Source: check_circle
Crossref

SignalingProfiler2.0: a network-based approach to bridge multi-omics data to phenotypic hallmarks

2024-01-29 | Preprint
DOI: 10.1101/2024.01.25.577229
Contributors: Veronica Venafra; Francesca Sacco; Livia Perfetto
Source: check_circle
Crossref

The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140 214 UK Biobank participants

Blood
2023-12-14 | Journal article
DOI: 10.1182/blood.2023020118
Contributors: Luca Stefanucci; Janine Collins; Matthew C. Sims; Inigo Barrio-Hernandez; Luanluan Sun; Oliver S. Burren; Livia Perfetto; Isobel Bender; Tiffany J. Callahan; Kathryn Fleming et al.
Source: check_circle
Crossref

Curation of causal interactions mediated by genes associated to autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental disorders

2023-01-09 | Preprint
DOI: 10.1101/2023.01.09.523265
Contributors: Marta Iannuccelli; Alessandro Vitriolo; Luana Licata; Cristina Cheroni; Luisa Castagnoli; Giuseppe Testa; Gianni Cesareni; Livia Perfetto
Source: check_circle
Crossref

SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update

Nucleic Acids Research
2023-01-06 | Journal article
DOI: 10.1093/nar/gkac883
Contributors: Prisca Lo Surdo; Marta Iannuccelli; Silvia Contino; Luisa Castagnoli; Luana Licata; Gianni Cesareni; Livia Perfetto
Source: check_circle
Crossref

A key role of the WEE1-CDK1 axis in mediating TKI-therapy resistance in FLT3-ITD positive acute myeloid leukemia patients.

Leukemia
2022-12-12 | Journal article
DOI: 10.1038/s41375-022-01785-w
PMID: 36509894
Contributors: Giorgia Massacci; Veronica Venafra; Sara Latini; Valeria Bica; Pugliese GM; Simone Graziosi; Klingelhuber F; Krahmer N; Fischer T; Dimitrios Mougiakakos et al.
Source: Self-asserted source
Livia Perfetto

A Resource to Infer Molecular Paths Linking Cancer Mutations to Perturbation of Cell Metabolism.

Frontiers in molecular biosciences
2022-05-18 | Journal article
DOI: 10.3389/fmolb.2022.893256
PMID: 35664677
PMC: PMC9158333
Contributors: Livia Perfetto; Iannuccelli M; Lo Surdo P; Licata L; Castagnoli L; Cesareni G; Perfetto L
Source: Self-asserted source
Livia Perfetto

SIGNORApp: a Cytoscape 3 application to access SIGNOR data

Bioinformatics
2022-03-04 | Journal article
DOI: 10.1093/bioinformatics/btab865
Contributors: Ilaria De Marinis; Prisca Lo Surdo; Gianni Cesareni; Livia Perfetto; Pier Luigi Martelli
Source: check_circle
Crossref

The IntAct database: efficient access to fine-grained molecular interaction data.

Nucleic acids research
2021-11-11 | Journal article
DOI: 10.1093/nar/gkab1006
PMID: 34761267
Source: Self-asserted source
Livia Perfetto

Complex Portal 2022: new curation frontiers.

Nucleic acids research
2021-10-29 | Journal article
DOI: 10.1093/nar/gkab991
PMID: 34718729
Source: Self-asserted source
Livia Perfetto

The Gene Regulation Knowledge Commons: The action area of GREEKC.

Biochimica et biophysica acta. Gene regulatory mechanisms
2021-10-29 | Journal article
DOI: 10.1016/j.bbagrm.2021.194768
PMID: 34757206
Source: Self-asserted source
Livia Perfetto

Assembling Disease Networks From Causal Interaction Resources.

Frontiers in genetics
2021-06-11 | Journal article
DOI: 10.3389/fgene.2021.694468
PMID: 34178043
PMC: PMC8226215
Source: Self-asserted source
Livia Perfetto

Combining Mass Spectrometry-Based Phosphoproteomics with a Network-Based Approach to Reveal FLT3-Dependent Mechanisms of Chemoresistance

Proteomes
2021-04-27 | Journal article
DOI: 10.3390/proteomes9020019
Contributors: Giusj Monia Pugliese; Sara Latini; Giorgia Massacci; Livia Perfetto; Francesca Sacco
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection

Genes
2021-03-22 | Journal article
DOI: 10.3390/genes12030450
Contributors: Livia Perfetto; Elisa Micarelli; Marta Iannuccelli; Prisca Lo Surdo; Giulio Giuliani; Sara Latini; Giusj Monia Pugliese; Giorgia Massacci; Simone Vumbaca; Federica Riccio et al.
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Analysing the Yeast Complexome - The Complex Portal rising to the challenge

2020-11-04 | Preprint
DOI: 10.1101/2020.11.03.367086
Contributors: Birgit H M Meldal; Carles Pons; Livia Perfetto; Noemi Del-Toro; Edith Wong; Patrick Aloy; Henning Hermjakob; Sandra Orchard; Pablo Porras
Source: check_circle
Crossref

The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions

2020-06-16 | Preprint
DOI: 10.1101/2020.06.16.153817
Contributors: L Perfetto; C Pastrello; N Del-Toro; M Duesbury; M Iannuccelli; M Kotlyar; L Licata; B Meldal; K Panneerselvam; S Panni et al.
Source: check_circle
Crossref

The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.

Database : the journal of biological databases and curation
2020-01-01 | Journal article
DOI: 10.1093/database/baaa096
PMID: 33206959
PMC: PMC7673336
Source: Self-asserted source
Livia Perfetto

SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update.

Nucleic acids research
2019-10-29 | Journal article
DOI: 10.1093/nar/gkz949
PMID: 31665520
Source: Self-asserted source
Livia Perfetto

CancerGeneNet: linking driver genes to cancer hallmarks.

Nucleic acids research
2019-10-10 | Journal article
DOI: 10.1093/nar/gkz871
PMID: 31598703
Source: Self-asserted source
Livia Perfetto

Myo-REG: A Portal for Signaling Interactions in Muscle Regeneration.

Frontiers in physiology
2019-09-27 | Journal article
DOI: 10.3389/fphys.2019.01216
PMID: 31611808
PMC: PMC6776608
Source: Self-asserted source
Livia Perfetto

Assessment of network module identification across complex diseases.

Nature methods
2019-08 | Journal article
DOI: 10.1038/s41592-019-0509-5
PMID: 31471613
PMC: PMC6719725
Contributors: Choobdar S; Ahsen ME; Crawford J; Tomasoni M; Fang T; Lamparter D; Lin J; Hescott B; Hu X; Mercer J et al.
Source: Self-asserted source
Livia Perfetto via Europe PubMed Central

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.

Nature communications
2019-06-17 | Journal article
DOI: 10.1038/s41467-019-09799-2
PMID: 31209238
PMC: PMC6572829
Source: Self-asserted source
Livia Perfetto

Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set.

Nature communications
2019-03 | Journal article
DOI: 10.1038/s41467-019-08814-w
PMID: 30833551
PMC: PMC6399256
Contributors: IMEx Consortium contributing authors; Del-Toro N; Duesbury M; Koch M; Perfetto L; Shrivastava A; Ochoa D; Wagih O; Piñero J; Kotlyar M et al.
Source: Self-asserted source
Livia Perfetto via Europe PubMed Central

CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.

Bioinformatics (Oxford, England)
2019-02-21 | Journal article
DOI: 10.1093/bioinformatics/btz132
PMID: 30793173
Source: Self-asserted source
Livia Perfetto

Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set.

Nature communications
2019-01 | Journal article
DOI: 10.1038/s41467-018-07709-6
PMID: 30602777
Contributors: Del-Toro N; Duesbury M; Koch M; Perfetto L; Shrivastava A; Ochoa D; Wagih O; Piñero J; Kotlyar M; Pastrello C et al.
Source: Self-asserted source
Livia Perfetto via Europe PubMed Central

Integration of macromolecular complex data into the Saccharomyces Genome Database.

Database : the journal of biological databases and curation
2019-01-01 | Journal article
DOI: 10.1093/database/baz008
PMID: 30715277
PMC: PMC6360207
Source: Self-asserted source
Livia Perfetto

The Gene Ontology Resource: 20 years and still GOing strong.

Nucleic acids research
2018-11 | Journal article
DOI: 10.1093/nar/gky1055
PMID: 30395331
Contributors: The Gene Ontology Consortium
Source: Self-asserted source
Livia Perfetto via Europe PubMed Central

Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes.

Nucleic acids research
2018-10 | Journal article
DOI: 10.1093/nar/gky1001
PMID: 30357405
Contributors: Meldal BHM; Bye-A-Jee H; Gajdoš L; Hammerová Z; Horácková A; Melicher F; Perfetto L; Pokorný D; Lopez MR; Türková A et al.
Source: Self-asserted source
Livia Perfetto via Europe PubMed Central

Combining Phosphoproteomics Datasets and Literature Information to Reveal the Functional Connections in a Cell Phosphorylation Network.

Proteomics
2018-03 | Journal article
DOI: 10.1002/pmic.201700311
PMID: 29280302
Contributors: Sacco F; Perfetto L; Cesareni G
Source: Self-asserted source
Livia Perfetto via Europe PubMed Central

DISNOR: a disease network open resource

Nucleic Acids Research
2018-01-04 | Journal article
DOI: 10.1093/nar/gkx876
Contributors: Prisca Lo Surdo; Alberto Calderone; Marta Iannuccelli; Luana Licata; Daniele Peluso; Luisa Castagnoli; Gianni Cesareni; Livia Perfetto
Source: check_circle
Crossref

SIGNOR: A database of causal relationships between biological entities-a short guide to searching and browsing

Current Protocols in Bioinformatics
2017 | Journal article
DOI: 10.1002/cpbi.28
EID:

2-s2.0-85029438175
Contributors: Surdo, P.L.; Calderone, A.; Cesareni, G.; Perfetto, L.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

SIGNOR: A database of causal relationships between biological entities

Nucleic Acids Research
2016 | Journal article
DOI: 10.1093/nar/gkv1048
EID:

2-s2.0-84976871607
Contributors: Perfetto, L.; Briganti, L.; Calderone, A.; Perpetuini, A.C.; Iannuccelli, M.; Langone, F.; Licata, L.; Marinkovic, M.; Mattioni, A.; Pavlidou, T. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases

Nucleic Acids Research
2014 | Journal article
DOI: 10.1093/nar/gkt1115
EID:

2-s2.0-84891799734
Contributors: Orchard, S.; Ammari, M.; Aranda, B.; Breuza, L.; Briganti, L.; Broackes-Carter, F.; Campbell, N.H.; Chavali, G.; Chen, C.; Del-Toro, N. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

Exploring the diversity of SPRY/B30.2-mediated interactions

Trends in Biochemical Sciences
2013 | Journal article
DOI: 10.1016/j.tibs.2012.10.001
EID:

2-s2.0-84871474752
Contributors: Perfetto, L.; Gherardini, P.F.; Davey, N.E.; Diella, F.; Helmer-Citterich, M.; Cesareni, G.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

HuPho: The human phosphatase portal

FEBS Journal
2013 | Journal article
DOI: 10.1111/j.1742-4658.2012.08712.x
EID:

2-s2.0-84872816249
Contributors: Liberti, S.; Sacco, F.; Calderone, A.; Perfetto, L.; Iannuccelli, M.; Panni, S.; Santonico, E.; Palma, A.; Nardozza, A.P.; Castagnoli, L. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

Corrigendum: Protein interaction data curation: The International Molecular Exchange (IMEx) consortium (Nature Methods (2012) 9, (345-350))

Nature Methods
2012 | Journal article
DOI: 10.1038/nmeth0612-626a
EID:

2-s2.0-84861984238
Contributors: Orchard, S.; Kerrien, S.; Abbani, S.; Aranda, B.; Bhate, J.; Bidwell, S.; Bridge, A.; Briganti, L.; Brinkman, F.; Cesareni, G. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

MINT, the molecular interaction database: 2012 Update

Nucleic Acids Research
2012 | Journal article
DOI: 10.1093/nar/gkr930
EID:

2-s2.0-84860918589
Contributors: Licata, L.; Briganti, L.; Peluso, D.; Perfetto, L.; Iannuccelli, M.; Galeota, E.; Sacco, F.; Palma, A.; Nardozza, A.P.; Santonico, E. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

Protein interaction data curation: The International Molecular Exchange (IMEx) consortium

Nature Methods
2012 | Journal article
DOI: 10.1038/nmeth.1931
EID:

2-s2.0-84859208501
Contributors: Orchard, S.; Kerrien, S.; Abbani, S.; Aranda, B.; Bhate, J.; Bidwell, S.; Bridge, A.; Briganti, L.; Brinkman, F.; Cesareni, G. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

The human phosphatase interactome: An intricate family portrait

FEBS Letters
2012 | Journal article
DOI: 10.1016/j.febslet.2012.05.008
EID:

2-s2.0-84864583212
Contributors: Sacco, F.; Perfetto, L.; Castagnoli, L.; Cesareni, G.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

The protein interaction network mediated by human SH3 domains

Biotechnology Advances
2012 | Journal article
DOI: 10.1016/j.biotechadv.2011.06.012
EID:

2-s2.0-84855756033
Contributors: Carducci, M.; Perfetto, L.; Briganti, L.; Paoluzi, S.; Costa, S.; Zerweck, J.; Schutkowski, M.; Castagnoli, L.; Cesareni, G.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

BMC Bioinformatics
2011 | Journal article
DOI: 10.1186/1471-2105-12-S8-S8
EID:

2-s2.0-80053430329
Contributors: Chatr-aryamontri, A.; Winter, A.; Perfetto, L.; Briganti, L.; Licata, L.; Iannuccelli, M.; Castagnoli, L.; Cesareni, G.; Tyers, M.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

BioCreative III interactive task: An overview

BMC Bioinformatics
2011 | Journal article
DOI: 10.1186/1471-2105-12-S8-S4
EID:

2-s2.0-80053393894
Contributors: Arighi, C.N.; Roberts, P.M.; Agarwal, S.; Bhattacharya, S.; Cesareni, G.; Chatr-aryamontri, A.; Clematide, S.; Gaudet, P.; Giglio, M.G.; Harrow, I. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

The Protein-Protein Interaction tasks of BioCreative III: Classification/ranking of articles and linking bio-ontology concepts to full text

BMC Bioinformatics
2011 | Journal article
DOI: 10.1186/1471-2105-12-S8-S3
EID:

2-s2.0-80053423937
Contributors: Krallinger, M.; Vazquez, M.; Leitner, F.; Salgado, D.; Chatr-aryamontri, A.; Winter, A.; Perfetto, L.; Briganti, L.; Licata, L.; Iannuccelli, M. et al.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier

MINT, the molecular interaction database: 2009 update

Nucleic Acids Research
2009 | Journal article
DOI: 10.1093/nar/gkp983
EID:

2-s2.0-75549083295
Contributors: Ceol, A.; Chatr Aryamontri, A.; Licata, L.; Peluso, D.; Briganti, L.; Perfetto, L.; Castagnoli, L.; Cesareni, G.
Source: Self-asserted source
Livia Perfetto via Scopus - Elsevier
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