Personal information

No personal information available

Activities

Collapse all

Employment (1)

European Bioinformatics Institute: Cambridge, Cambridgeshire, GB

2018-05-01 to present | Biocurator (Proteomics)
Employment
Source: Self-asserted source
Deepti Jaiswal Kundu

Education and qualifications (1)

Masaryk University: Brno, CZ

2011-04-19 to 2015-10-15 | PhD (National Centre for Biomolecular Research)
Education
Source: Self-asserted source
Deepti Jaiswal Kundu

Works (12)

Open‐source large language models in action: A bioinformatics chatbot for PRIDE database

PROTEOMICS
2024-11 | Journal article
DOI: 10.1002/pmic.202400005
Contributors: Jingwen Bai; Selvakumar Kamatchinathan; Deepti J. Kundu; Chakradhar Bandla; Juan Antonio Vizcaíno; Yasset Perez‐Riverol
Source: check_circle
Crossref

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues

PLOS Computational Biology
2022-06-17 | Journal article
DOI: 10.1371/journal.pcbi.1010174
Contributors: Shengbo Wang; Zhaolei Zhang; David García-Seisdedos; Ananth Prakash; Deepti Jaiswal Kundu; Andrew Collins; Nancy George; Silvie Fexova; Pablo Moreno; Irene Papatheodorou et al.
Source: check_circle
Crossref

PRIDE database: Proteomics data submission, access and visualisation

[EMBL-EBI]
2022-06-15 | Lecture
DOI: 10.6019/tol.pridedatabase-w.2022.00001.1
Source: Self-asserted source
Deepti Jaiswal Kundu

Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues

2021-12-21 | Preprint
DOI: 10.1101/2021.12.20.473413
Contributors: Shengbo Wang; David García-Seisdedos; Ananth Prakash; Deepti Jaiswal Kundu; Andrew Collins; Nancy George; Silvie Fexova; Pablo Moreno; Irene Papatheodorou; Andrew R. Jones et al.
Source: check_circle
Crossref

An integrated view of baseline protein expression in human tissues

2021-09-11 | Preprint
DOI: 10.1101/2021.09.10.459811
Contributors: Ananth Prakash; David García-Seisdedos; Shengbo Wang; Deepti Jaiswal Kundu; Andrew Collins; Nancy George; Pablo Moreno; Irene Papatheodorou; Andrew R. Jones; Juan Antonio Vizcaíno
Source: check_circle
Crossref

A proteomics sample metadata representation for multiomics integration, and big data analysis

2021-05-23 | Preprint
DOI: 10.1101/2021.05.21.445143
Contributors: Chengxin Dai; Anja Füllgrabe; Julianus Pfeuffer; Elizaveta Solovyeva; Jingwen Deng; Pablo Moreno; Selvakumar Kamatchinathan; Deepti Jaiswal Kundu; Nancy George; Silvie Fexova et al.
Source: check_circle
Crossref

The PRIDE database and related tools and resources in 2019: improving support for quantification data.

Nucleic acids research
2018-11 | Journal article
DOI: 10.1093/nar/gky1106
PMID: 30395289
Contributors: Perez-Riverol Y; Csordas A; Bai J; Bernal-Llinares M; Hewapathirana S; Kundu DJ; Inuganti A; Griss J; Mayer G; Eisenacher M et al.
Source: Self-asserted source
Deepti Jaiswal Kundu via Europe PubMed Central

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank.

Nucleic acids research
2015-01 | Journal article
DOI: 10.1093/nar/gku1118
PMID: 25392418
PMC: PMC4383933
Contributors: Sehnal D; Svobodová Vařeková R; Pravda L; Ionescu CM; Geidl S; Horský V; Jaiswal D; Wimmerová M; Koča J
Source: Self-asserted source
Deepti Jaiswal Kundu via Europe PubMed Central

Consistency of sugar structures and their annotation in the PDB.

Journal of cheminformatics
2014 | Journal article
DOI: 10.1186/1758-2946-6-s1-p41
PMC: PMC3980126
Contributors: Jaiswal D; Sehnal D; Vařeková RS; Ionescu C; Koča J
Source: Self-asserted source
Deepti Jaiswal Kundu via Europe PubMed Central

MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes.

Nucleic acids research
2014-07 | Journal article
DOI: 10.1093/nar/gku426
PMID: 24848013
PMC: PMC4086108
Contributors: Vařeková RS; Jaiswal D; Sehnal D; Ionescu CM; Geidl S; Pravda L; Horský V; Wimmerová M; Koča J
Source: Self-asserted source
Deepti Jaiswal Kundu via Europe PubMed Central

Searching for tunnels of proteins – comparison of approaches and available software tools.

Journal of cheminformatics
2012 | Journal article
PMC: PMC3341237
Contributors: Jaiswal D; Vařeková RS; Ionescu C; Sehnal D; Koča J
Source: Self-asserted source
Deepti Jaiswal Kundu via Europe PubMed Central

MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels.

Nucleic acids research
2012-07 | Journal article
DOI: 10.1093/nar/gks363
PMID: 22553366
PMC: PMC3394309
Contributors: Berka K; Hanák O; Sehnal D; Banás P; Navrátilová V; Jaiswal D; Ionescu CM; Svobodová Vareková R; Koca J; Otyepka M
Source: Self-asserted source
Deepti Jaiswal Kundu via Europe PubMed Central
How many people are using ORCID?