Personal information

Emails & domains

Verified email addresses

Websites & social links

https://tiago.bio.br

Other IDs

Scopus Author ID: 57200940340

Keywords

wikidata, computational biology, biocuration

Countries

Brazil

Activities

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Employment (1)

Biodiversity Heritage Library: Washington, District of Columbia, US

2024-11 to 2025-05 | Wikimedian-in-Residence
Employment
Source: Self-asserted source
Tiago Lubiana

Education and qualifications (3)

Universidade de São Paulo: São Paulo, SP, BR

2021-07-21 to 2024-09-09 | PhD (Bioinformatics Program)
Education
Source: Self-asserted source
Tiago Lubiana

Universidade de São Paulo: São Paulo, SP, BR

2018-01-17 to 2020-03-31 | Master of Sciences (Bioinformatics Program)
Education
Source: Self-asserted source
Tiago Lubiana

Universidade de São Paulo: Sao Paulo, SP, BR

2014-02-17 to 2017-12-03 | Biomedical Sciences
Education
Source: Self-asserted source
Tiago Lubiana

Professional activities (1)

Ronin Institute: São Paulo, São Paulo, BR

2020 to 2023 | Research Scholar
Service
Source: Self-asserted source
Tiago Lubiana

Funding (1)

Building a biological knowledge graph via Wikidata with a focus on the Human Cell Atlas

Grant
Fundação de Amparo à Pesquisa do Estado de São Paulo (São Paulo, BR)
GRANT_NUMBER: 19/26284-1
Source: Self-asserted source
Tiago Lubiana

Works (38)

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Journal of Biomedical Semantics
2024 | Journal article
DOI: 10.1186/S13326-024-00320-3
WOSUID: WOS:001333847000001
Contributors: Toro, Sabrina; Anagnostopoulos, Anna V.; Bello, Susan M.; Blumberg, Kai; Cameron, Rhiannon; Carmody, Leigh; Diehl, Alexander D.; Dooley, Damion M.; Duncan, William D.; Fey, Petra et al.
Source: check_circle
Web of Science Researcher Profile Sync

A reasonable request for true data sharing

The Lancet Regional Health - Americas
2024-07 | Journal article
DOI: 10.1016/j.lana.2024.100795
Contributors: Tiago Lubiana; Helder I. Nakaya
Source: check_circle
Crossref

Bringing PanglaoDB to 5-star Linked Open Data using Wikidata

2024-04-15 | Preprint
DOI: 10.1101/2024.04.12.589259
Contributors: Tiago Lubiana; João Vitor F. Cavalcante
Source: check_circle
Crossref

Characterization of Comments About bioRxiv and medRxiv Preprints

JAMA Network Open
2023 | Journal article
DOI: 10.1001/jamanetworkopen.2023.31410
EID:

2-s2.0-85168971850

Part of ISSN: 25743805
Contributors: Carneiro, C.F.D.; Da Costa, G.G.; Neves, K.; Abreu, M.B.; Tan, P.B.; Rayêe, D.; Boos, F.Z.; Andrejew, R.; Lubiana, T.; Malički, M. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

arXiv
2023 | Other
DOI: 10.48550/arXiv.2312.10904
EID:

2-s2.0-85181393371

Part of ISSN: 23318422
Contributors: Toro, S.; Anagnostopoulos, A.V.; Bello, S.; Blumberg, K.; Cameron, R.; Carmody, L.; Diehl, A.D.; Dooley, D.; Duncan, W.; Fey, P. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Ten Quick Tips for Harnessing the Power of ChatGPT/GPT-4 in Computational Biology

arXiv
2023 | Other
DOI: 10.48550/arXiv.2303.16429
EID:

2-s2.0-85152258357

Part of ISSN: 23318422
Contributors: Lubiana, T.; Lopes, R.; Medeiros, P.; Silva, J.C.; Goncalves, A.N.A.; Maracaja-Coutinho, V.; Nakaya, H.I.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Ten quick tips for harnessing the power of ChatGPT in computational biology

PLOS Computational Biology
2023-08-10 | Journal article
DOI: 10.1371/journal.pcbi.1011319
Contributors: Tiago Lubiana; Patricia M. Palagi; Rafael Lopes; Pedro Medeiros; Juan Carlo Silva; Andre Nicolau Aquime Goncalves; Vinicius Maracaja-Coutinho; Helder I. Nakaya
Source: check_circle
Crossref
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Ten quick tips for editing Wikidata

PLOS Computational Biology
2023-07-20 | Journal article
DOI: 10.1371/journal.pcbi.1011235
Contributors: Thomas Shafee; Francis Ouellette; Daniel Mietchen; Tiago Lubiana; Dariusz Jemielniak; Andra Waagmeester
Source: check_circle
Crossref
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Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia

Bioinformatics
2022 | Journal article
DOI: 10.1093/bioinformatics/btac236
EID:

2-s2.0-85132950139

Part of ISSN: 14602059 13674803
Contributors: Kilpatrick, A.M.; Rahman, F.; Anjum, A.; Shome, S.; Andalib, K.M.S.; Banik, S.; Chowdhury, S.F.; Coombe, P.; Astroz, Y.C.; Douglas, J.M. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Complex Portal 2022: New curation frontiers

Nucleic Acids Research
2022 | Journal article
DOI: 10.1093/nar/gkab991
EID:

2-s2.0-85122997981

Part of ISSN: 13624962 03051048
Contributors: Meldal, B.H.M.; Perfetto, L.; Combe, C.; Lubiana, T.; Cavalcante, J.V.F.; Bye-A-Jee, H.; Waagmeester, A.; del-Toro, N.; Shrivastava, A.; Barrera, E. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Erratum: Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure (mSystems (2021) 6:5 (e00095-21) DOI: 10.1128/mSystems.00095-21)

mSystems
2022 | Journal article
DOI: 10.1128/msystems.01447-21
EID:

2-s2.0-85123867018

Part of ISSN: 23795077
Contributors: Rando, H.M.; MacLean, A.L.; Lee, A.J.; Lordan, R.; Ray, S.; Bansal, V.; Skelly, A.N.; Sell, E.; Dziak, J.J.; Shinholster, L. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Guidelines for reporting cell types: The MIRACL standard

arXiv
2022 | Other
DOI: 10.48550/arXiv.2204.09673
EID:

2-s2.0-85132142239

Part of ISSN: 23318422
Contributors: Lubiana, T.; Roncaglia, P.; Mungall, C.J.; Quardokus, E.M.; Fortriede, J.D.; Osumi-Sutherland, D.; Diehl, A.D.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Unifying the identification of biomedical entities with the Bioregistry

Scientific Data
2022 | Journal article
DOI: 10.1038/s41597-022-01807-3
EID:

2-s2.0-85142281057

Part of ISSN: 20524463
Contributors: Hoyt, C.T.; Balk, M.; Callahan, T.J.; Domingo-Fernández, D.; Haendel, M.A.; Hegde, H.B.; Himmelstein, D.S.; Karis, K.; Kunze, J.; Lubiana, T. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Using logical constraints to validate statistical information about disease outbreaks in collaborative knowledge graphs: the case of COVID-19 epidemiology in Wikidata

PeerJ Computer Science
2022 | Journal article
DOI: 10.7717/PEERJ-CS.1085
EID:

2-s2.0-85140613072

Part of ISSN: 23765992
Contributors: Turki, H.; Jemielniak, D.; Taieb, M.A.H.; Gayo, J.E.L.; Aouicha, M.B.; Banat, M.; Shafee, T.; Prud’hommeaux, E.; Lubiana, T.; Das, D. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Mapping the content of comments on bioRxiv and medRxiv preprints

2022-11-24 | Preprint
DOI: 10.1101/2022.11.23.517621
Contributors: Clarissa F. D. Carneiro; Gabriel Costa; Kleber Neves; Mariana B. Abreu; Pedro B. Tan; Danielle Rayêe; Flávia Boos; Roberta Andrejew; Tiago Lubiana; Mario Malički et al.
Source: check_circle
Crossref
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WikiGOA: Gene set enrichment analysis based on Wikipedia and the Gene Ontology

2022-09-17 | Preprint
DOI: 10.1101/2022.09.15.508149
Contributors: Tiago Lubiana; Thomaz Lüscher Dias; Débora Guerra Peixe; Helder Takashi Imoto Nakaya
Source: check_circle
Crossref
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Unifying the Identification of Biomedical Entities with the Bioregistry

2022-07-10 | Preprint
DOI: 10.1101/2022.07.08.499378
Contributors: Charles Tapley Hoyt; Meghan Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa A. Haendel; Harshad B. Hegde; Daniel S. Himmelstein; Klas Karis; John Kunze; Tiago Lubiana et al.
Source: check_circle
Crossref
grade
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Representing COVID-19 information in collaborative knowledge graphs: The case of Wikidata

Semantic Web
2022-02-03 | Journal article
DOI: 10.3233/SW-210444
Contributors: Houcemeddine Turki; Mohamed Ali Hadj Taieb; Thomas Shafee; Tiago Lubiana; Dariusz Jemielniak; Mohamed Ben Aouicha; Jose Emilio Labra Gayo; Eric A. Youngstrom; Mus’ab Banat; Diptanshu Das et al.
Source: check_circle
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An open-publishing response to the COVID-19 infodemic

arXiv
2021 | Other
DOI: 10.48550/arxiv.2109.08633
EID:

2-s2.0-85170883927

Part of ISSN: 23318422
Contributors: Rando, H.M.; Boca, S.M.; D'Agostino McGowan, L.; Himmelstein, D.S.; Robson, M.P.; Rubinetti, V.; Velazquez, R.; Greene, C.S.; Gitter, A.; Bansal, V. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Dietary supplements and nutraceuticals under investigation for COVID-19 prevention and treatment

arXiv
2021 | Other
DOI: 10.48550/arxiv.2102.02250
EID:

2-s2.0-85170895552

Part of ISSN: 23318422
Contributors: Lordan, R.; Rando, H.M.; Greene, C.S.; Bansal, V.; Barton, J.P.; Boca, S.M.; Brueffer, C.; Byrd, J.B.; Capone, S.; Das, S. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure

arXiv
2021 | Other
DOI: 10.48550/arxiv.2102.01521
EID:

2-s2.0-85171213956

Part of ISSN: 23318422
Contributors: Rando, H.M.; MacLean, A.L.; Lee, A.J.; Lordan, R.; Ray, S.; Bansal, V.; Skelly, A.N.; Sell, E.; Dziak, J.J.; Shinholster, L. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

mSystems
2021 | Journal article
DOI: 10.1128/mySystems.00095-21
EID:

2-s2.0-85153959680

Part of ISSN: 23795077
Contributors: Rando, H.M.; MacLean, A.L.; Lee, A.J.; Lordan, R.; Ray, S.; Bansal, V.; Skelly, A.N.; Sell, E.; Dziak, J.J.; Shinholster, L. et al.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Using coexpression to explore cell-type diversity with the fcoex package

2021-12-09 | Preprint
DOI: 10.1101/2021.12.07.471603
Contributors: Tiago Lubiana; Helder Nakaya
Source: check_circle
Crossref
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Sharing intermediate datasets from systematic reviews

2021-11-26 | Preprint
DOI: 10.31222/osf.io/vbwa9
Contributors: Tiago Lubiana; Olavo Bohrer Amaral; Kleber Neves
Source: check_circle
Crossref

Paratransgenesis - Candidate Chassis for iGEM USP-Brazil 2017

2021-03-23 | Dataset
DOI: 10.5281/ZENODO.4630965
Source: Self-asserted source
Tiago Lubiana

Studies on GEO related to neurogeneration or infections diseases

2021-03-02 | Dataset
DOI: 10.5281/ZENODO.4573573
Source: Self-asserted source
Tiago Lubiana

Towards a pragmatic definition of cell type

2021-01-04 | Other
DOI: 10.22541/au.160979530.02627436/v1
Contributors: Tiago Lubiana; Helder I Nakaya
Source: check_circle
Crossref

Current OBO ontologies are not sufficient to annotate COVID-19-related cell types

CEUR Workshop Proceedings
2020 | Conference paper
EID:

2-s2.0-85101116984

Part of ISSN: 16130073
Contributors: Lubiana, T.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Wikidata WikiProject COVID-19 : a community effort to integrate biomedical knowledge

2020 | Conference poster
DOI: 10.7490/F1000RESEARCH.1118155.1
Source: Self-asserted source
Tiago Lubiana

Wikidata WikiProject COVID-19: Modelling the pandemic in real time

CEUR Workshop Proceedings
2020 | Conference paper
EID:

2-s2.0-85101151684

Part of ISSN: 16130073
Contributors: Lubiana, T.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Representing COVID-19 information in collaborative knowledge graphs: a study of Wikidata

2020-09-14 | Journal article
DOI: 10.5281/ZENODO.4033382
Source: Self-asserted source
Tiago Lubiana

Using logical constraints to validate information in collaborative knowledge graphs: a study of COVID-19 on Wikidata

2020-08-30 | Journal article
DOI: 10.5281/ZENODO.4008359
Source: Self-asserted source
Tiago Lubiana

The opportunistic pathogen Stenotrophomonas maltophilia utilizes a type IV secretion system for interbacterial killing

PLOS Pathogens
2019-09-12 | Journal article
DOI: 10.1371/journal.ppat.1007651
Contributors: Ethel Bayer-Santos; Matthew C Wolfgang; William Cenens; Bruno Yasui Matsuyama; Gabriel Umaji Oka; Giancarlo Di Sessa; Izabel Del Valle Mininel; Tiago Lubiana Alves; Chuck Shaker Farah
Source: check_circle
Crossref

Zebrafish sp7 mutants show tooth cycling independent of attachment, eruption and poor differentiation of teeth

bioRxiv
2018 | Other
DOI: 10.1101/259085
EID:

2-s2.0-85095637972

Part of ISSN: 26928205
Contributors: Kague, E.; Witten, P.E.; Soenens, M.; Campos, C.L.; Lubiana, T.; Fisher, S.; Hammond, C.; Robson, B.K.; Passos-Bueno, M.R.; Huysseune, A.
Source: Self-asserted source
Tiago Lubiana via Scopus - Elsevier

Zebrafish sp7 mutants show tooth cycling independent of attachment, eruption and poor differentiation of teeth

Developmental Biology
2018-03 | Journal article
DOI: 10.1016/j.ydbio.2018.01.021
Part of ISSN: 0012-1606
Source: Self-asserted source
Tiago Lubiana
grade
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Chimeric spider silk production in microalgae: a modular bionanomaterial

Research Ideas and Outcomes
2016-06 | Journal article
DOI: 10.3897/rio.2.e9342
Part of ISSN: 2367-7163
Contributors: João Vitor Molino; Tiago Lubiana Alves; Livia Ferreira-Camargo; Miguel Croce; Allan Tanaka; Felipe Buson; Pedro Ribeiro; Antony Campos-Salazar; Eduardo Antonio; André Maizel et al.
Source: Self-asserted source
Tiago Lubiana via Crossref Metadata Search

iGEM Registry Bacterial Transformation v1 (protocols.io.rr3d58n)

protocols.io
Other
DOI: 10.17504/protocols.io.rr3d58n
Contributors: Tiago Lubiana
Source: Self-asserted source
Tiago Lubiana via Crossref Metadata Search

Science Family skills: An Alexa Assistant Tailored for Laboratory Routine

Other
DOI: 10.1101/484147
Contributors: Tiago Lubiana Alves; Andre A.N.A. Goncalves; Helder I Nakaya
Source: Self-asserted source
Tiago Lubiana via Crossref Metadata Search
grade
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Peer review (3 reviews for 3 publications/grants)

Review activity for IEEE transactions on industrial informatics. (1)
Review activity for Journal of cheminformatics. (1)
Review activity for PLoS computational biology. (1)
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