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Employment (2)

ELIXIR : Hinxton , Cambridgeshire, GB

2018-04-01 to present | Tools platform coordinator
Employment
Source: Self-asserted source
Jennifer Harrow

Wellcome Trust Sanger Institute: Cambridge, Cambridgeshire, GB

2000-04-01 to 2016-04-01 | head of vertebrate annotation (computational genomics )
Employment
Source: Self-asserted source
Jennifer Harrow

Education and qualifications (1)

University of Cambridge: Cambridge, Cambridgeshire, GB

1997-10-01 to 2000-01-01 | Dphil (Plant Sciences )
Education
Source: Self-asserted source
Jennifer Harrow

Works (50 of 107)

Items per page:
Page 1 of 3

Author Correction: DOME: recommendations for supervised machine learning validation in biology.

Nature methods
2021-11 | Journal article
DOI: 10.1038/s41592-021-01304-2
PMID: 34556867
Contributors: Walsh I; Fishman D; Garcia-Gasulla D; Titma T; Pollastri G; ELIXIR Machine Learning Focus Group; Harrow J; Psomopoulos FE; Tosatto SCE
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

DOME: recommendations for supervised machine learning validation in biology.

Nature methods
2021-10 | Journal article
DOI: 10.1038/s41592-021-01205-4
PMID: 34316068
Contributors: Walsh I; Fishman D; Garcia-Gasulla D; Titma T; Pollastri G; ELIXIR Machine Learning Focus Group; Harrow J; Psomopoulos FE; Tosatto SCE
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

ELIXIR Software Management Plan for Life Sciences

2021-10-25 | Preprint
DOI: 10.37044/osf.io/k8znb
Contributors: Renato Alves; Dimitrios Bampalikis; Leyla Jael Castro; José María Fernández; Jennifer Harrow; Mateusz Kuzak; Eva Martin; Fotis E. Psomopoulos; Allegra Via
Source: check_circle
Crossref

ELIXIR: providing a sustainable infrastructure for life science data at European scale

Bioinformatics
2021-08-25 | Journal article
DOI: 10.1093/bioinformatics/btab481
Contributors: Jennifer Harrow; Rachel Drysdale; Andrew Smith; Susanna Repo; Jerry Lanfear; Niklas Blomberg; Jonathan Wren
Source: check_circle
Crossref

Measuring outcomes and impact from the BioHackathon Europe

2021-08-10 | Preprint
DOI: 10.37044/osf.io/3dxhg
Contributors: Leyla Jael Castro; Corinne Martin; Georgi Lazarov; Dana Cernoskova; Terue Takatsuki; Jennifer Harrow; Dietrich Rebholz-Schuhmann
Source: check_circle
Crossref

Proteomics Software in bio.tools: Coverage and Annotations.

Journal of proteome research
2021-03 | Journal article
DOI: 10.1021/acs.jproteome.0c00978
PMID: 33720718
Contributors: Schwämmle V; Harrow J; Ienasescu H
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

ELIXIR‐EXCELERATE: establishing Europe's data infrastructure for the life science research of the future

The EMBO Journal
2021-03-15 | Journal article
DOI: 10.15252/embj.2020107409
Contributors: Jennifer Harrow; John Hancock; Niklas Blomberg; Niklas Blomberg; Søren Brunak; Salvador Capella‐Gutierrez; Christine Durinx; Chris T. Evelo; Carole Goble; Ivo Gut et al.
Source: check_circle
Crossref

ECCB2020: the 19th European Conference on Computational Biology.

Bioinformatics (Oxford, England)
2020-12 | Journal article
DOI: 10.1093/bioinformatics/btaa979
PMID: 33381810
Contributors: Capella-Gutierrez S; Alloza E; Gallastegui E; Kavakiotis I; Harrow J; Langtry A; ECCB2020 Steering Committee; Valencia A
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Perspectives on ENCODE.

Nature
2020-07 | Journal article
DOI: 10.1038/s41586-020-2449-8
PMID: 32728248
PMC: PMC7410827
Contributors: ENCODE Project Consortium; Snyder MP; Gingeras TR; Moore JE; Weng Z; Gerstein MB; Ren B; Hardison RC; Stamatoyannopoulos JA; Graveley BR et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Transcriptional activity and strain-specific history of mouse pseudogenes.

Nature communications
2020-07 | Journal article
DOI: 10.1038/s41467-020-17157-w
PMID: 32728065
PMC: PMC7392758
Contributors: Sisu C; Muir P; Frankish A; Fiddes I; Diekhans M; Thybert D; Odom DT; Flicek P; Keane TM; Hubbard T et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons.

BMC genomics
2020-03 | Journal article
DOI: 10.1186/s12864-020-6583-3
PMID: 32126975
PMC: PMC7055050
Contributors: Barnes IHA; Ibarra-Soria X; Fitzgerald S; Gonzalez JM; Davidson C; Hardy MP; Manthravadi D; Van Gerven L; Jorissen M; Zeng Z et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons.

2020-02 | Preprint
DOI: 10.21203/rs.2.17248/v4
PPR: PPR128515
Contributors: Barnes IHA; Ibarra-Soria X; Fitzgerald S; Gonzalez JM; Davidson C; Hardy MP; Manthravadi D; Gerven LV; Jorissen M; Zeng Z et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Re-annotation of 191 developmental and epileptic encephalopathy-associated genes unmasks de novo variants in <i>SCN1A</i>.

NPJ genomic medicine
2019-12 | Journal article
DOI: 10.1038/s41525-019-0106-7
PMID: 31814998
PMC: PMC6889285
Contributors: Steward CA; Roovers J; Suner MM; Gonzalez JM; Uszczynska-Ratajczak B; Pervouchine D; Fitzgerald S; Viola M; Stamberger H; Hamdan FF et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

An intrinsically disordered proteins community for ELIXIR

2019-10 | Preprint
DOI: 10.12688/f1000research.20136.1
PMID: 31824649
PMC: PMC6880265
Contributors: Davey NE; Babu MM; Blackledge M; Bridge A; Capella-Gutierrez S; Dosztanyi Z; Drysdale R; Edwards RJ; Elofsson A; Felli IC et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons

2019-09 | Preprint
DOI: 10.1101/774612
PPR: PPR93109
Contributors: Barnes IHA; Ibarra-Soria X; Fitzgerald S; Gonzalez JM; Davidson C; Hardy MP; Manthravadi D; Van Gerven L; Jorissen M; Zeng Z et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Systematic re-annotation of 191 genes associated with early-onset epilepsy unmasks de novo variants linked to Dravet syndrome in novel SCN1A exons

2019-05 | Preprint
DOI: 10.1101/648576
PPR: PPR80504
Contributors: Steward CA; Roovers J; Suner M; Gonzalez JM; Uszczynska-Ratajczak B; Pervouchine D; Fitzgerald S; Viola M; Stamberger H; Hamdan FF et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.

Nature genetics
2018-10 | Journal article
DOI: 10.1038/s41588-018-0223-8
PMID: 30275530
PMC: PMC6205630
Contributors: Lilue J; Doran AG; Fiddes IT; Abrudan M; Armstrong J; Bennett R; Chow W; Collins J; Collins S; Czechanski A et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

2018-08 | Preprint
DOI: 10.1101/386656
PPR: PPR46638
Contributors: Sisu C; Muir P; Frankish A; Fiddes I; Diekhans M; Thybert D; Odom DT; Flicek P; Keane T; Hubbard T et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

2018-02 | Preprint
DOI: 10.1101/235838
PPR: PPR18849
Contributors: Lilue J; Doran AG; Fiddes IT; Abrudan M; Armstrong J; Bennett R; Chow W; Collins J; Collins S; Czechanski A et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.

Nature genetics
2017-11 | Journal article
DOI: 10.1038/ng.3988
PMID: 29106417
PMC: PMC5709232
Contributors: Lagarde J; Uszczynska-Ratajczak B; Carbonell S; Pérez-Lluch S; Abad A; Davis C; Gingeras TR; Frankish A; Harrow J; Guigo R et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Genome annotation for clinical genomic diagnostics: strengths and weaknesses.

Genome medicine
2017-05 | Journal article
DOI: 10.1186/s13073-017-0441-1
PMID: 28558813
PMC: PMC5448149
Contributors: Steward CA; Parker APJ; Minassian BA; Sisodiya SM; Frankish A; Harrow J
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing

2017-02-01 | Preprint
DOI: 10.1101/105064
Contributors: Julien Lagarde; Barbara Uszczynska-Ratajczak; Silvia Carbonell; SÍlvia Pérez-Lluch; Amaya Abad; Carrie Davis; Thomas R. Gingeras; Adam Frankish; Jennifer Harrow; Roderic Guigo et al.
Source: check_circle
Crossref

The state of play in higher eukaryote gene annotation.

Nature reviews. Genetics
2016-10 | Journal article
DOI: 10.1038/nrg.2016.119
PMID: 27773922
PMC: PMC5876476
Contributors: Mudge JM; Harrow J
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).

Nature communications
2016-08 | Journal article
DOI: 10.1038/ncomms12339
PMID: 27531712
PMC: PMC4992054
Contributors: Lagarde J; Uszczynska-Ratajczak B; Santoyo-Lopez J; Gonzalez JM; Tapanari E; Mudge JM; Steward CA; Wilming L; Tanzer A; Howald C et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow.

Nature communications
2016-06 | Journal article
DOI: 10.1038/ncomms11778
PMID: 27250503
PMC: PMC4895710
Contributors: Wright JC; Mudge J; Weisser H; Barzine MP; Gonzalez JM; Brazma A; Choudhary JS; Harrow J
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Ensembl 2016.

Nucleic acids research
2015-12 | Journal article
DOI: 10.1093/nar/gkv1157
PMID: 26687719
PMC: PMC4702834
Contributors: Yates A; Akanni W; Amode MR; Barrell D; Billis K; Carvalho-Silva D; Cummins C; Clapham P; Fitzgerald S; Gil L et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

The pig X and Y Chromosomes: structure, sequence, and evolution.

Genome research
2015-11 | Journal article
DOI: 10.1101/gr.188839.114
PMID: 26560630
PMC: PMC4691746
Contributors: Skinner BM; Sargent CA; Churcher C; Hunt T; Herrero J; Loveland JE; Dunn M; Louzada S; Fu B; Chow W et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Devising a Consensus Framework for Validation of Novel Human Coding Loci.

Journal of proteome research
2015-10 | Journal article
DOI: 10.1021/acs.jproteome.5b00688
PMID: 26367542
PMC: PMC4765950
Contributors: Bruford EA; Lane L; Harrow J
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Comprehensive comparative homeobox gene annotation in human and mouse.

Database : the journal of biological databases and curation
2015-09 | Journal article
DOI: 10.1093/database/bav091
PMID: 26412852
PMC: PMC4584094
Contributors: Wilming LG; Boychenko V; Harrow JL
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Creating reference gene annotation for the mouse C57BL6/J genome assembly.

Mammalian genome : official journal of the International Mammalian Genome Society
2015-07 | Journal article
DOI: 10.1007/s00335-015-9583-x
PMID: 26187010
PMC: PMC4602055
Contributors: Mudge JM; Harrow J
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.

BMC genomics
2015-06 | Journal article
DOI: 10.1186/1471-2164-16-s8-s2
PMID: 26110515
PMC: PMC4502323
Contributors: Frankish A; Uszczynska B; Ritchie GR; Gonzalez JM; Pervouchine D; Petryszak R; Mudge JM; Fonseca N; Brazma A; Guigo R et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

The pig X and Y chromosomes: structure, sequence and evolution

2014-12 | Preprint
DOI: 10.1101/012914
PPR: PPR31255
Contributors: Skinner BM; Sargent CA; Churcher C; Hunt T; Herrero J; Loveland J; Dunn M; Louzada S; Fu B; Chow W et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Ensembl 2015.

Nucleic acids research
2014-10 | Journal article
DOI: 10.1093/nar/gku1010
PMID: 25352552
PMC: PMC4383879
Contributors: Cunningham F; Amode MR; Barrell D; Beal K; Billis K; Brent S; Carvalho-Silva D; Clapham P; Coates G; Fitzgerald S et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

RNAcentral: an international database of ncRNA sequences.

Nucleic acids research
2014-10 | Journal article
DOI: 10.1093/nar/gku991
PMID: 25352543
PMC: PMC4384043
Contributors: RNAcentral Consortium; Petrov AI; Kay SJE; Gibson R; Kulesha E; Staines D; Bruford EA; Wright MW; Burge S; Finn RD et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Comparative analysis of pseudogenes across three phyla.

Proceedings of the National Academy of Sciences of the United States of America
2014-08 | Journal article
DOI: 10.1073/pnas.1407293111
PMID: 25157146
PMC: PMC4169933
Contributors: Sisu C; Pei B; Leng J; Frankish A; Zhang Y; Balasubramanian S; Harte R; Wang D; Rutenberg-Schoenberg M; Clark W et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences.

Genome biology
2014-06 | Journal article
DOI: 10.1186/gb-2014-15-6-r88
PMID: 24980144
PMC: PMC4197830
Contributors: Colonna V; Ayub Q; Chen Y; Pagani L; Luisi P; Pybus M; Garrison E; Xue Y; Tyler-Smith C; 1000 Genomes Project Consortium et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel.

Nature communications
2014-06 | Journal article
DOI: 10.1038/ncomms4934
PMID: 25653097
PMC: PMC4338501
Contributors: Delaneau O; Marchini J; 1000 Genomes Project Consortium; 1000 Genomes Project Consortium
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.

Human molecular genetics
2014-06 | Journal article
DOI: 10.1093/hmg/ddu309
PMID: 24939910
PMC: PMC4204768
Contributors: Ezkurdia I; Juan D; Rodriguez JM; Frankish A; Diekhans M; Harrow J; Vazquez J; Valencia A; Tress ML
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

GENCODE pseudogenes.

Methods in molecular biology (Clifton, N.J.)
2014-01 | Journal article
DOI: 10.1007/978-1-4939-0835-6_10
PMID: 24823776
Contributors: Frankish A; Harrow J
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

The shrinking human protein coding complement: are there fewer than 20,000 genes?

2014-01 | Preprint
DOI: 10.1101/001909
PPR: PPR33488
Contributors: Ezkurdia I; Juan D; Rodriguez JM; Frankish A; Deikhans M; Harrow JL; Vazquez J; Valencia A; Tress M
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Ensembl 2014.

Nucleic acids research
2013-12 | Journal article
DOI: 10.1093/nar/gkt1196
PMID: 24316576
PMC: PMC3964975
Contributors: Flicek P; Amode MR; Barrell D; Beal K; Billis K; Brent S; Carvalho-Silva D; Clapham P; Coates G; Fitzgerald S et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

The Vertebrate Genome Annotation browser 10 years on.

Nucleic acids research
2013-12 | Journal article
DOI: 10.1093/nar/gkt1241
PMID: 24316575
PMC: PMC3964964
Contributors: Harrow JL; Steward CA; Frankish A; Gilbert JG; Gonzalez JM; Loveland JE; Mudge J; Sheppard D; Thomas M; Trevanion S et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Assessment of transcript reconstruction methods for RNA-seq.

Nature methods
2013-11 | Journal article
DOI: 10.1038/nmeth.2714
PMID: 24185837
PMC: PMC3851240
Contributors: Steijger T; Abril JF; Engström PG; Kokocinski F; RGASP Consortium; Hubbard TJ; Guigó R; Harrow J; Bertone P
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Current status and new features of the Consensus Coding Sequence database.

Nucleic acids research
2013-11 | Journal article
DOI: 10.1093/nar/gkt1059
PMID: 24217909
PMC: PMC3965069
Contributors: Farrell CM; O'Leary NA; Harte RA; Loveland JE; Wilming LG; Wallin C; Diekhans M; Barrell D; Searle SM; Aken B et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Systematic evaluation of spliced alignment programs for RNA-seq data.

Nature methods
2013-11 | Journal article
DOI: 10.1038/nmeth.2722
PMID: 24185836
PMC: PMC4018468
Contributors: Engström PG; Steijger T; Sipos B; Grant GR; Kahles A; Rätsch G; Goldman N; Hubbard TJ; Harrow J; Guigó R et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Functional transcriptomics in the post-ENCODE era.

Genome research
2013-10 | Journal article
DOI: 10.1101/gr.161315.113
PMID: 24172201
PMC: PMC3847767
Contributors: Mudge JM; Frankish A; Harrow J
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Integrative annotation of variants from 1092 humans: application to cancer genomics.

Science (New York, N.Y.)
2013-10 | Journal article
DOI: 10.1126/science.1235587
PMID: 24092746
PMC: PMC3947637
Contributors: Khurana E; Fu Y; Colonna V; Mu XJ; Kang HM; Lappalainen T; Sboner A; Lochovsky L; Chen J; Harmanci A et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene.

Genome biology
2013-07 | Journal article
DOI: 10.1186/gb-2013-14-7-r70
PMID: 23815980
PMC: PMC4053754
Contributors: Gonzàlez-Porta M; Frankish A; Rung J; Harrow J; Brazma A
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

Structural and functional annotation of the porcine immunome.

BMC genomics
2013-05 | Journal article
DOI: 10.1186/1471-2164-14-332
PMID: 23676093
PMC: PMC3658956
Contributors: Dawson HD; Loveland JE; Pascal G; Gilbert JG; Uenishi H; Mann KM; Sang Y; Zhang J; Carvalho-Silva D; Hunt T et al.
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central

The non-obese diabetic mouse sequence, annotation and variation resource: an aid for investigating type 1 diabetes.

Database : the journal of biological databases and curation
2013-05 | Journal article
DOI: 10.1093/database/bat032
PMID: 23729657
PMC: PMC3668384
Contributors: Steward CA; Gonzalez JM; Trevanion S; Sheppard D; Kerry G; Gilbert JG; Wicker LS; Rogers J; Harrow JL
Source: Self-asserted source
Jennifer Harrow via Europe PubMed Central
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Peer review (2 reviews for 1 publication/grant)

Review activity for Genome biology. (2)
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