Personal information

Emails & domains

Verified email addresses

Verified email domains

Websites & social links

Baudis Group Website
Progenetix cancer genome repository
arrayMap genomic arrays in cancer
Michael Baudis' website at the Institute of Molecular Life Sciences, Zurich University
hCNV - Human Copy Number Variations Community
SchemaBlocks - GA4GH Standards Community Project
genome.blog

Other IDs

ResearcherID: J-4602-2012
Loop profile: 59808
Scopus Author ID: 57204299103

Keywords

cancer, genomics, bioinformatics, computational biology

Countries

Switzerland

Biography

Heidelberg - Stanford - Gainesville - Aachen - Zürich

Activities

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Employment (7)

Universität Zürich: Zurich, ZH, CH

Employment
Source: check_circle
University of Zurich

Universität Zürich: Zurich, ZH, CH

2015-08-01 to present | Associate Professor of Bioinformatics (Institute of Molecular Life Sciences)
Employment
Source: Self-asserted source
Michael Baudis

Universität Zürich: Zürich, ZH, CH

2007-08-01 to 2015-07-31 | Group Leader (Institute of Molecular Life Sciences)
Employment
Source: Self-asserted source
Michael Baudis

Medizinische Fakultät der RWTH Aachen: Aachen, Nordrhein-Westfalen, DE

2006-04-01 to 2007-07-30 | Group Leader (Genetics)
Employment
Source: Self-asserted source
Michael Baudis

University of Florida College of Medicine: Gainesville, FL, US

2003-12-01 to 2006-03-31 | Research Assistant Professor (Pediatric Hematology and Oncology)
Employment
Source: Self-asserted source
Michael Baudis

Stanford University: Stanford, CA, US

2001-01-31 to 2003-11-30 | Postdoctoral Researcher (Pathology)
Employment
Source: Self-asserted source
Michael Baudis

Universitätsklinikum Heidelberg Medizinische Klinik: Heidelberg, Baden-Württemberg, DE

1998-07-01 to 2000-12-31 | Resident (Hematology)
Employment
Source: Self-asserted source
Michael Baudis

Education and qualifications (2)

Stanford University: Stanford, CA, US

2001-01-01 to 2003-11-30 | Post-Doctorate in Molecular Biology (Pathology)
Education
Source: Self-asserted source
Michael Baudis

Ruprecht Karls Universität Heidelberg: Heidelberg, Baden-Württemberg, DE

1992-02-01 to 1999-12-02 | Dr. med. (Medicine)
Education
Source: Self-asserted source
Michael Baudis

Professional activities (1)

Global Alliance for Genomics and Health: Toronto, CA

2014 to present
Membership
Source: Self-asserted source
Michael Baudis

Works (50 of 107)

Items per page:
Page 1 of 3

In Search of the Perfect Model: How Cancer Cell Lines Relate to Native Cancers

2024-05-17 | Preprint
DOI: 10.1101/2024.05.15.594310
Contributors: Rahel Paloots; Ziying Yang; Michael Baudis
Source: check_circle
Crossref

cancercelllines.org-a novel resource for genomic variants in cancer cell lines.

Database : the journal of biological databases and curation
2024-04-01 | Journal article
DOI: 10.1093/database/baae030
PMID: 38687868
PMC: PMC11060486
Contributors: Rahel Paloots; Baudis M
Source: Self-asserted source
Michael Baudis

labelSeg: segment annotation for tumor copy number alteration profiles

Briefings in Bioinformatics
2024-01-22 | Journal article
DOI: 10.1093/bib/bbad541
Contributors: Hangjia Zhao; Michael Baudis
Source: check_circle
Crossref

cancercelllines.org - a Novel Resource for Genomic Variants in Cancer Cell Lines

2023-12-13 | Preprint
DOI: 10.1101/2023.12.12.571281
Contributors: Rahel Paloots; Michael Baudis
Source: check_circle
Crossref

Short tandem repeat mutations regulate gene expression in colorectal cancer

2023-11-29 | Preprint
DOI: 10.1101/2023.11.29.569189
Contributors: Max A. Verbiest; Oxana Lundström; Feifei Xia; Michael Baudis; Tugce Bilgin Sonay; Maria Anisimova
Source: check_circle
Crossref

labelSeg: segment annotation for tumor copy number alteration profiles

2023-05-19 | Preprint
DOI: 10.1101/2023.05.17.541097
Contributors: Hangjia Zhao; Michael Baudis
Source: check_circle
Crossref

Candidate targets of copy number deletion events across 17 cancer types

2022-06-30 | Preprint
DOI: 10.1101/2022.06.29.498080
Contributors: Qingyao Huang; Michael Baudis
Source: check_circle
Crossref

Beacon v2 and Beacon networks: A “lingua franca” for federated data discovery in biomedical genomics, and beyond

Human Mutation
2022-04-08 | Journal article
DOI: 10.1002/humu.24369
Contributors: Jordi Rambla; Michael Baudis; Roberto Ariosa; Tim Beck; Lauren A. Fromont; Arcadi Navarro; Rahel Paloots; Manuel Rueda; Gary Saunders; Babita Singh et al.
Source: check_circle
Crossref

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Cell Genomics
2021-11 | Journal article
DOI: 10.1016/j.xgen.2021.100029
Contributors: Heidi L. Rehm; Angela J.H. Page; Lindsay Smith; Jeremy B. Adams; Gil Alterovitz; Lawrence J. Babb; Maxmillian P. Barkley; Michael Baudis; Michael J.S. Beauvais; Tim Beck et al.
Source: check_circle
Crossref

International federation of genomic medicine databases using GA4GH standards

Cell Genomics
2021-11 | Journal article
DOI: 10.1016/j.xgen.2021.100032
Contributors: Adrian Thorogood; Heidi L. Rehm; Peter Goodhand; Angela J.H. Page; Yann Joly; Michael Baudis; Jordi Rambla; Arcadi Navarro; Tommi H. Nyronen; Mikael Linden et al.
Source: check_circle
Crossref

The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification

Cell Genomics
2021-11 | Journal article
DOI: 10.1016/j.xgen.2021.100027
Contributors: Alex H. Wagner; Lawrence Babb; Gil Alterovitz; Michael Baudis; Matthew Brush; Daniel L. Cameron; Melissa Cline; Malachi Griffith; Obi L. Griffith; Sarah E. Hunt et al.
Source: check_circle
Crossref

The GA4GH Phenopacket schema: A computable representation of clinical data for precision medicine

2021-11-30 | Other
DOI: 10.1101/2021.11.27.21266944
Contributors: Julius O. B. Jacobsen; Michael Baudis; Gareth S. Baynam; Jacques S. Beckmann; Sergi Beltran; Tiffany J. Callahan; Christopher G. Chute; Mélanie Courtot; Daniel Danis; Olivier Elemento et al.
Source: check_circle
Crossref

The Progenetix oncogenomic resource in 2021

Database
2021-07-17 | Journal article
DOI: 10.1093/database/baab043
Contributors: Qingyao Huang; Paula Carrio-Cordo; Bo Gao; Rahel Paloots; Michael Baudis
Source: check_circle
Crossref

Copy number variant heterogeneity among cancer types reflects inconsistent concordance with diagnostic classifications

2021-03-01 | Preprint
DOI: 10.1101/2021.03.01.433348
Contributors: Paula Carrio-Cordo; Michael Baudis
Source: check_circle
Crossref

The Progenetix oncogenomic resource in 2021

2021-02-15 | Preprint
DOI: 10.1101/2021.02.15.428237
Contributors: Qingyao Huang; Paula Carrio-Cordo; Bo Gao; Rahel Paloots; Michael Baudis
Source: check_circle
Crossref

The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation and Federated Identification of Molecular Variation

2021-01-17 | Preprint
DOI: 10.1101/2021.01.15.426843
Contributors: Alex H Wagner; Lawrence Babb; Gil Alterovitz; Michael Baudis; Matthew Brush; Daniel L Cameron; Melissa Cline; Malachi Griffith; Obi L Griffith; Sarah Hunt et al.
Source: check_circle
Crossref

Mountains and Chasms: Surveying the Oncogenomic Publication Landscape

Oncology
2020 | Journal article
DOI: 10.1159/000493192
Contributors: Paula Carrio-Cordo; Michael Baudis
Source: check_circle
Crossref

Oncology Informatics: Status Quo and Outlook

Oncology
2020 | Journal article
DOI: 10.1159/000507586
Contributors: Paul Martin Putora; Michael Baudis; Beth M. Beadle; Issam El Naqa; Frank A. Giordano; Nils H. Nicolay
Source: check_circle
Crossref
grade
Preferred source (of 2)‎

Signatures of Discriminative Copy Number Aberrations in 31 Cancer Subtypes

2020-12-19 | Preprint
DOI: 10.1101/2020.12.18.423278
Contributors: Bo Gao; Michael Baudis
Source: check_circle
Crossref

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research [version 1; peer review: awaiting peer review]

2020-10-13 | Journal article
DOI: 10.12688/f1000research.24887.1
Part of ISSN: 2046-1402
Contributors: David Salgado; Irina M. Armean; Michael Baudis; Sergi Beltran; Salvador Capella-Gutierrez; Denise Carvalho-Silva; Victoria Dominguez Del Angel; Joaquin Dopazo; Laura I. Furlong; Bo Gao et al.
Source: check_circle
F1000
grade
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The Ubiquitin Ligase TRIP12 Limits PARP1 Trapping and Constrains PARP Inhibitor Efficiency

Cell Reports
2020-08 | Journal article
DOI: 10.1016/j.celrep.2020.107985
Contributors: Marco Gatti; Ralph Imhof; Qingyao Huang; Michael Baudis; Matthias Altmeyer
Source: check_circle
Crossref

Minimum error calibration and normalization for genomic copy number analysis.

Genomics
2020-05-12 | Journal article
DOI: 10.1016/j.ygeno.2020.05.008
PMID: 32413400
Source: Self-asserted source
Michael Baudis

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.

Nature genetics
2020-04-03 | Journal article
DOI: 10.1038/s41588-020-0603-8
PMID: 32246132
PMC: PMC7127986
Source: Self-asserted source
Michael Baudis

Enabling population assignment from cancer genomes with SNP2pop

Scientific Reports
2020-03-16 | Journal article
DOI: 10.1038/s41598-020-61854-x
Contributors: Qingyao Huang; Michael Baudis
Source: check_circle
Crossref

DNA copy number imbalances in primary cutaneous lymphomas (PCL)

2018-09-14 | Other
DOI: 10.1101/417766
Contributors: Georgiana Gug; Qingyao Huang; Elena Chiticariu; Caius Solovan; Michael Baudis
Source: check_circle
Crossref

Registered access: authorizing data access.

European journal of human genetics : EJHG
2018-08 | Journal article
DOI: 10.1038/s41431-018-0219-y
PMID: 30069064
PMC: PMC6244209
Contributors: Dyke SOM; Linden M; Lappalainen I; De Argila JR; Carey K; Lloyd D; Spalding JD; Cabili MN; Kerry G; Foreman J et al.
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

Enabling population assignment from cancer genomes with SNP2pop

2018-07-14 | Other
DOI: 10.1101/368647
Contributors: Qingyao Huang; Michael Baudis
Source: check_circle
Crossref

Krüppel-Like Factor 10 participates in cervical cancer immunoediting through transcriptional regulation of Pregnancy-Specific Beta-1 Glycoproteins.

Scientific reports
2018-06 | Journal article
DOI: 10.1038/s41598-018-27711-8
PMID: 29930344
PMC: PMC6013423
Contributors: Marrero-Rodríguez D; Taniguchi-Ponciano K; Subramaniam M; Hawse JR; Pitel KS; Arreola-De la Cruz H; Huerta-Padilla V; Ponce-Navarrete G; Salcedo M
Source: Self-asserted source
Michael Baudis via Europe PubMed Central
grade
Preferred source (of 2)‎

segment_liftover : a Python tool to convert segments between genome assemblies

F1000Research
2018-06-08 | Journal article
DOI: 10.12688/f1000research.14148.2
Contributors: Bo Gao; Qingyao Huang; Michael Baudis
Source: check_circle
Crossref

segment_liftover : a Python tool to convert segments between genome assemblies [version 1; referees: 1 approved, 1 approved with reservations]

2018-03-14 | Journal article
DOI: 10.12688/f1000research.14148.1
Part of ISSN: 2046-1402
Contributors: Bo Gao; Qingyao Huang; Michael Baudis
Source: check_circle
F1000
grade
Preferred source (of 2)‎

segment_liftover: a Python tool to convert segments between genome assemblies

2018-03-01 | Other
DOI: 10.1101/274084
Contributors: Bo Gao; Qingyao Huang; Michael Baudis
Source: check_circle
Crossref

Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma.

Cancer cell
2017-09 | Journal article
DOI: 10.1016/j.ccell.2017.08.017
PMID: 28966033
PMC: PMC5637314
Contributors: Mackay A; Burford A; Carvalho D; Izquierdo E; Fazal-Salom J; Taylor KR; Bjerke L; Clarke M; Vinci M; Nandhabalan M et al.
Source: Self-asserted source
Michael Baudis via Europe PubMed Central
grade
Preferred source (of 2)‎

CNARA: reliability assessment for genomic copy number profiles

BMC Genomics
2016-10 | Journal article
DOI: 10.1186/s12864-016-3074-7
Contributors: Ni Ai; Haoyang Cai; Caius Solovan; Michael Baudis
Source: Self-asserted source
Michael Baudis via Crossref Metadata Search
grade
Preferred source (of 2)‎

HG-95INTEGRATED MOLECULAR META-ANALYSIS OF 1000 PAEDIATRIC HIGH GRADE GLIOMA AND DIPG

Neuro Oncol
2016-06 | Journal article
DOI: 10.1093/neuonc/now073.91
Contributors: Alan Mackay; Anna Burford; Janat Fazal Salom; Lynn Bjerke; Mara Vinci; Valeria Molinari; Kathryn Taylor; Meera Nandhabalan; Sergey Popov; Kun Mu et al.
Source: Self-asserted source
Michael Baudis via Crossref Metadata Search

PKCα and HMGB1 antagonistically control hydrogen peroxide-induced poly-ADP-ribose formation

Nucleic Acids Research
2016-05 | Journal article
DOI: 10.1093/nar/gkw442
Contributors: Anneli Andersson; Andrej Bluwstein; Nitin Kumar; Federico Teloni; Jens Traenkle; Michael Baudis; Matthias Altmeyer; Michael O. Hottiger
Source: Self-asserted source
Michael Baudis via Crossref Metadata Search

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.

2016-01 | Journal article
DOI: 10.1093/nar/gkv1310
PMID: 26615188
PMC: PMC4702916
Contributors: SIB Swiss Institute of Bioinformatics Members
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

arrayMap 2014: an updated cancer genome resource

2015 | Other
DOI: 10.5167/UZH-106875
Source: check_circle
DataCite

INTEGRATIVE MOLECULAR META-ANALYSIS OF 700 PEDIATRIC HIGH GRADE GLIOMA AND DIPG DEFINES WIDESPREAD INTER-AND INTRA-TUMORAL HETEROGENEITY

Neuro-Oncology
2015 | Journal article
WOSUID: WOS:000361304800049
Contributors: Mackay, Alan; Vinci, Mara; Burford, Anna; Bjerke, Lynn; Taylor, Katy; Nandhabalan, Meera; Marshall, Lynley; Molinari, Valeria; Popov, Sergey; Ingram, Wendy et al.
Source: check_circle
Web of Science Researcher Profile Sync

Genomic Instability of Osteosarcoma Cell Lines in Culture: Impact on the Prediction of Metastasis Relevant Genes

PLoS ONE
2015-05 | Journal article
DOI: 10.1371/journal.pone.0125611
Contributors: Roman Muff; Prisni Rath; Ram Mohan Ram Kumar; Knut Husmann; Walter Born; Michael Baudis; Bruno Fuchs; Dragana Nikitovic-Tzanakaki
Source: Self-asserted source
Michael Baudis via Crossref Metadata Search
grade
Preferred source (of 2)‎

HG-11INTEGRATIVE MOLECULAR META-ANALYSIS OF 700 PEDIATRIC HIGH GRADE GLIOMA AND DIPG DEFINES WIDESPREAD INTER- AND INTRA-TUMORAL HETEROGENEITY.

Neuro-Oncology
2015-04 | Journal article
DOI: 10.1093/neuonc/nov061.48
PMC: PMC4482984
Contributors: Mackay A; Vinci M; Burford A; Bjerke L; Taylor K; Nandhabalan M; Marshall L; Molinari V; Popov S; Ingram W et al.
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

Biopsying parapsoriasis: <i>quo vadis</i>? Are morphological stains enough or are ancillary tests needed?

Romanian Journal of Morphology and Embryology
2014 | Journal article
WOSUID: WOS:000346957100010
Contributors: Baderca, Flavia; Chiticariu, Elena; Baudis, Michael; Solovan, Caius
Source: check_circle
Web of Science Researcher Profile Sync

Biopsying parapsoriasis: quo vadis? Are morphological stains enough or are ancillary tests needed?

2014 | Other
DOI: 10.5167/UZH-106874
Source: check_circle
DataCite

Biopsying parapsoriasis: quo vadis? Are morphological stains enough or are ancillary tests needed?

2014 | Journal article
PMID: 25607389
Contributors: Baderca F; Chiticariu E; Baudis M; Solovan C
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens.

2014 | Journal article
DOI: 10.1186/1471-2164-15-82
PMID: 24476156
PMC: PMC3909908
Contributors: Cai H; Kumar N; Bagheri HC; von Mering C; Robinson MD; Baudis M
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

arrayMap 2014: an updated cancer genome resource

Nucleic Acids Research
2014-11 | Journal article
DOI: 10.1093/nar/gku1123
Contributors: H. Cai; S. Gupta; P. Rath; N. Ai; M. Baudis
Source: Self-asserted source
Michael Baudis via Crossref Metadata Search

HIGH GRADE GLIOMAS AND DIPG.

2014-06 | Journal article
PMC: PMC4046287
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens

2014-01 | Report
DOI: 10.1101/001776
Contributors: H. Cai; N. Kumar; H. C. Bagheri; C. von Mering; M. Robinson; M. Baudis
Source: Self-asserted source
Michael Baudis via Crossref Metadata Search

Progenetix: 12 years of oncogenomic data curation.

2013-11 | Journal article
PMID: 24225322
Contributors: Cai H; Kumar N; Ai N; Gupta S; Rath P; Baudis M
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

SIL1 mutations and clinical spectrum in patients with Marinesco-Sjogren syndrome.

2013-10 | Journal article
DOI: 10.1093/brain/awt283
PMID: 24176978
Contributors: Krieger M; Roos A; Stendel C; Claeys KG; Sonmez FM; Baudis M; Bauer P; Bornemann A; de Goede C; Dufke A et al.
Source: Self-asserted source
Michael Baudis via Europe PubMed Central

Recurrent loss of heterozygosity in 1p36 associated with TNFRSF14 mutations in IRF4 translocation negative pediatric follicular lymphomas.

2013-08 | Journal article
DOI: 10.3324/haematol.2012.073916
PMID: 23445872
PMC: PMC3729904
Contributors: Martin-Guerrero I; Salaverria I; Burkhardt B; Szczepanowski M; Baudis M; Bens S; de Leval L; Garcia-Orad A; Horn H; Lisfeld J et al.
Source: Self-asserted source
Michael Baudis via Europe PubMed Central
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