Personal information

Emails & domains

Verified email addresses

Websites & social links

Personal Website
GitHub
WikiData
Scholia
figshare
Mastodon
Authorea
DBLP
LinkedIn
OpenReview
Semantic Scholar
Semion
PyPI
OpenAlex
Google Scholar
arXiv
GND
Quora
SciProfiles
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Other IDs

ResearcherID: B-5720-2018
Scopus Author ID: 56305849200
Loop profile: 827476
SciProfiles: 1072667

Keywords

Knowledge Assembly, Networks Biology, Systems Biology, Data Integration, Cheminformatics, Software Engineering, Natural Language Processing, FAIR Data

Countries

Germany, United States

Biography

Bio/cheminformatician, software developer, open scientist. 🇺🇸 living in 🇩🇪 (he/him). See https://cthoyt.com/about/

Activities

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Employment (5)

Northeastern University: Boston, MA, US

2023-08-01 to 2024-04-30 (Computer Science)
Employment
Source: Self-asserted source
Charles Tapley Hoyt

Harvard Medical School: Boston, MA, US

2021-02-15 to 2023-07-31 | Postdoctoral Research Fellow (Laboratory of Systems Pharmacology)
Employment
Source: Self-asserted source
Charles Tapley Hoyt

Enveda Biosciences: Bonn, Nordrhein-Westfalen, DE

2020-01 to 2020-10 | Computational Biologist
Employment
Source: Self-asserted source
Charles Tapley Hoyt

University of Bonn: Bonn, Nordrhein-Westfalen, DE

2018-01-01 to 2019-12-31 | Lecturer
Employment
Source: Self-asserted source
Charles Tapley Hoyt

Fraunhofer SCAI: Sankt Augustin, Nordrhein-Westfalen, DE

2016-02 to 2019-12-31 | Research Fellow (Bioinformatics)
Employment
Source: Self-asserted source
Charles Tapley Hoyt

Education and qualifications (3)

Rheinische Friedrich Wilhelms Universität Bonn: Bonn, Nordrhein-Westfalen, DE

2018-01-01 to 2019-12-03 | Doctor of Philosophy (Computer Science)
Education
Source: Self-asserted source
Charles Tapley Hoyt

Rheinische Friedrich Wilhelms Universität Bonn: Bonn, Nordrhein-Westfalen, DE

2015-08 to 2017-10-27 | Master of Science (Bonn-Aachen International Center for Information Technology)
Education
Source: Self-asserted source
Charles Tapley Hoyt

Northeastern University: Boston, MA, US

2011-08 to 2015-04 | Bachelor of Science (Chemistry and Chemical Biology)
Education
Source: Self-asserted source
Charles Tapley Hoyt

Professional activities (3)

International Society for Biocuration: Geneva, CH

Membership
Source: Self-asserted source
Charles Tapley Hoyt

American Chemical Society: Washington, DC, US

Membership
Source: Self-asserted source
Charles Tapley Hoyt

International Society of Biocuration: Geneva, CH

2023 | Excellence in Biocuration Early Career Award
Distinction
Source: Self-asserted source
Charles Tapley Hoyt

Funding (3)

The Human Brain Pharmacome

2018-02 to 2021-01 | Award
Fraunhofer-Gesellschaft (Munich, DE)
Source: Self-asserted source
Charles Tapley Hoyt

Inflammation and AD: modulating microglia function focussing on TREM2 and CD33 - Sofia ref.: 115976

2016-11-01 to 2021-10-31 | Grant
European Commission (Brussels, BE)
URL: https://app.dimensions.ai/details/grant/grant.6623563
GRANT_NUMBER: 115976
Source: Self-asserted source
Charles Tapley Hoyt via DimensionsWizard

Aetionomy – Organising Mechanistic Knowledge about Neurodegenerative Diseases for the Improvement of Drug Development and Therapy

Source: Self-asserted source
Charles Tapley Hoyt via DimensionsWizard

Works (50 of 90)

Items per page:
Page 1 of 2

CLEP

Zenodo
2025-03-31 | Software
DOI: 10.5281/zenodo.15113734
Contributors: Vinay Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández
Source: check_circle
DataCite
grade
Preferred source (of 2)‎

CLEP

Zenodo
2025-03-31 | Software
DOI: 10.5281/zenodo.3965606
Contributors: Vinay Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández
Source: check_circle
DataCite
grade
Preferred source (of 3)‎

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2025-03-24 | Software
DOI: 10.5281/zenodo.15075436
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite
grade
Preferred source (of 2)‎

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2025-03-23 | Software
DOI: 10.5281/zenodo.15069687
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite

CLEP

Zenodo
2025-03-17 | Software
DOI: 10.5281/zenodo.15038203
Contributors: Vinay Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández
Source: check_circle
DataCite
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Preferred source (of 2)‎

SeMRA Anatomy Mappings Database

Zenodo
2025-03-14 | Dataset
DOI: 10.5281/zenodo.15025261
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

SeMRA Cell and Cell Line Mapping Database

Zenodo
2025-03-14 | Dataset
DOI: 10.5281/zenodo.15025307
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
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Preferred source (of 2)‎

SeMRA Disease Mappings Database

Zenodo
2025-03-14 | Dataset
DOI: 10.5281/zenodo.11091885
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
Preferred source (of 4)‎

SeMRA Disease Mappings Database

Zenodo
2025-03-14 | Dataset
DOI: 10.5281/zenodo.15025282
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

SeMRA Protein Complex Mapping Database

Zenodo
2025-03-14 | Dataset
DOI: 10.5281/zenodo.11091421
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
Preferred source (of 3)‎

SeMRA Protein Complex Mapping Database

Zenodo
2025-03-14 | Dataset
DOI: 10.5281/zenodo.15025297
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2025-03-05 | Software
DOI: 10.5281/zenodo.14973446
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2025-02-14 | Software
DOI: 10.5281/zenodo.14870476
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2025-01-28 | Software
DOI: 10.5281/zenodo.14753475
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite

FAIRsharing record for: Bioregistry

FAIRsharing
2024 | Dataset
DOI: 10.25504/fairsharing.250a8c
Contributors: FAIRsharing Team; Charles Tapley Hoyt
Source: check_circle
DataCite
grade
Preferred source (of 2)‎

Test Upload 3

Zenodo
2024-11-28 | Dataset
DOI: 10.5281/zenodo.14235682
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

Test Upload 3

Zenodo
2024-11-28 | Dataset
DOI: 10.5281/zenodo.14235681
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
Preferred source (of 4)‎

Test Upload 3

Zenodo
2024-11-28 | Dataset
DOI: 10.5281/zenodo.14238058
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
Preferred source (of 4)‎

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2024-11-04 | Software
DOI: 10.5281/zenodo.14033973
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite

International Society of Biocuration Annual General Meeting 2024

Zenodo
2024-10-29 | Other
DOI: 10.5281/zenodo.14008079
Contributors: Susan Bello; Charles Tapley Hoyt; International Society Of Biocuration
Source: check_circle
DataCite
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Preferred source (of 3)‎

International Society of Biocuration Annual General Meeting 2024

Zenodo
2024-10-29 | Other
DOI: 10.5281/zenodo.14008078
Contributors: Susan Bello; Charles Tapley Hoyt; International Society Of Biocuration
Source: check_circle
DataCite
grade
Preferred source (of 5)‎

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2024-10-21 | Software
DOI: 10.5281/zenodo.13963046
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite

Computational Tools and Data Integration to Accelerate Vaccine Development: Challenges, Opportunities, and Future Directions

2024-09-26 | Preprint
DOI: 10.31219/osf.io/mtx9b_v1
Contributors: Lindsey N Anderson; Charles Tapley Hoyt; Jeremy Daniel Zucker; Jeremy R. Teuton; Andrew D. McNaughton; Klas Klaris; natasha arokium christian; Jackson T. Warley; Zachary R. Stromberg; Benjamin M. Gyori et al.
Source: check_circle
Crossref

Computational Tools and Data Integration to Accelerate Vaccine Development: Challenges, Opportunities, and Future Directions

2024-09-26 | Preprint
DOI: 10.31219/osf.io/mtx9b
Contributors: Lindsey N Anderson; Charles Tapley Hoyt; Jeremy Zucker; Jeremy R. Teuton; Andrew D. McNaughton; Klas Klaris; Natasha N. Arokium-Christian; Jackson T. Warley; Zachary R. Stromberg; Benjamin M. Gyori et al.
Source: check_circle
Crossref

Eliater: a Python package for estimating outcomes of perturbations in biomolecular networks

Bioinformatics
2024-09-02 | Journal article
DOI: 10.1093/bioinformatics/btae527
Contributors: Sara Mohammad-Taheri; Pruthvi Prakash Navada; Charles Tapley Hoyt; Jeremy Zucker; Karen Sachs; Benjamin M Gyori; Olga Vitek; Pier Luigi Martelli
Source: check_circle
Crossref

Easy ORCID

Zenodo
2024-08-17 | Dataset
DOI: 10.5281/zenodo.13333068
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

Unifying the Identification of Biomedical Entities with the Bioregistry

Zenodo
2024-08-16 | Software
DOI: 10.5281/zenodo.13331188
Contributors: Charles Tapley Hoyt; Meghan A. Balk; Tiffany J. Callahan; Daniel Domingo-Fernández; Melissa Anne Haendel; Harshad Hegde; Daniel Himmelstein; Klas; John Kunze; Tiago Lubiana et al.
Source: check_circle
DataCite

CLEP

Zenodo
2024-07-15 | Software
DOI: 10.5281/zenodo.12743058
Contributors: Vinay Bharadhwaj; Mehdi Ali; Colin Birkenbihl; Sarah Mubeen; Jens Lehmann; Martin Hofmann-Apitius; Charles Tapley Hoyt; Daniel Domingo-Fernández
Source: check_circle
DataCite

Easy ORCID

Zenodo
2024-06-21 | Dataset
DOI: 10.5281/zenodo.12204667
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

SeMRA Anatomy Mappings Database

Zenodo
2024-04-30 | Dataset
DOI: 10.5281/zenodo.11091803
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
Preferred source (of 3)‎

SeMRA Cell and Cell Line Mapping Database

Zenodo
2024-04-30 | Dataset
DOI: 10.5281/zenodo.11091581
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
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SeMRA Gene Mapping Database

Zenodo
2024-04-30 | Dataset
DOI: 10.5281/zenodo.11092012
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
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SeMRA Raw Semantic Mapping Database

Zenodo
2024-04-29 | Dataset
DOI: 10.5281/zenodo.11082038
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
Preferred source (of 3)‎

2024 Ownership and Maintenance of FAIRsharing record: bioregistry
Source: check_circle
FAIRsharing.org

The O3 guidelines: open data, open code, and open infrastructure for sustainable curated scientific resources

2023-11-16 | Preprint
DOI: 10.31219/osf.io/vuzt3
Contributors: Charles Tapley Hoyt; Benjamin M. Gyori
Source: check_circle
Crossref
grade
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Easy ORCID

Zenodo
2023-11-15 | Dataset
DOI: 10.5281/zenodo.10137940
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite
grade
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A Simple Standard for Ontological Mappings 2023: Updates on data model, collaborations and tooling

Zenodo
2023-11-07 | Other
DOI: 10.5281/zenodo.8202394
Contributors: Nicolas Matentzoglu; Ian Braun; Anita Reane Caron; Damien Goutte-Gattat; Benjamin M. Gyori; Nomi Harris; Emily Hartley; Harshad Hegde; Sven Hertling; Charles Tapley Hoyt et al.
Source: check_circle
DataCite

Improving reproducibility and reusability in the Journal of Cheminformatics

Journal of Cheminformatics
2023-06-30 | Journal article
DOI: 10.1186/s13321-023-00730-y
Contributors: Charles Tapley Hoyt; Barbara Zdrazil; Rajarshi Guha; Nina Jeliazkova; Karina Martinez-Mayorga; Eva Nittinger
Source: check_circle
Crossref

Biocuration 2023 Conference Booklet

Zenodo
2023-04-22 | Dataset
DOI: 10.5281/zenodo.7852241
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

Prediction and curation of missing biomedical identifier mappings with Biomappings

Bioinformatics
2023-04-03 | Journal article
DOI: 10.1093/bioinformatics/btad130
Contributors: Charles Tapley Hoyt; Amelia L Hoyt; Benjamin M Gyori; Peter Robinson
Source: check_circle
Crossref
grade
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Rhea Differential Reaction Fingerprints for Enzyme Classification Prediction

Zenodo
2023-01-31 | Other
DOI: 10.5281/zenodo.7591838
Contributors: Charles Tapley Hoyt
Source: check_circle
DataCite

A review of biomedical datasets relating to drug discovery: a knowledge graph perspective.

Briefings in bioinformatics
2022-11 | Journal article
DOI: 10.1093/bib/bbac404
PMID: 36151740
Contributors: Bonner S; Barrett IP; Ye C; Swiers R; Engkvist O; Bender A; Hoyt CT; Hamilton WL
Source: Self-asserted source
Charles Tapley Hoyt via Europe PubMed Central

Unifying the identification of biomedical entities with the Bioregistry.

Scientific data
2022-11 | Journal article
DOI: 10.1038/s41597-022-01807-3
PMID: 36402838
Contributors: Hoyt CT; Balk M; Callahan TJ; Domingo-Fernández D; Haendel MA; Hegde HB; Himmelstein DS; Karis K; Kunze J; Lubiana T et al.
Source: Self-asserted source
Charles Tapley Hoyt via Europe PubMed Central

Drive-by Curation

2022-11-15 | Book chapter
DOI: 10.32388/KBX9VO
Contributors: Charles Tapley Hoyt
Source: check_circle
Crossref

Zombie Mapping

2022-11-15 | Book chapter
DOI: 10.32388/DYZ5J3
Contributors: Charles Tapley Hoyt
Source: check_circle
Crossref

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.

Apollo - University of Cambridge Repository
2022-11-09 | Journal article
DOI: 10.17863/cam.90455
Contributors: Nicolas Matentzoglu; Damien Goutte-Gattat; Shawn Zheng Kai Tan; James P. Balhoff; Seth Carbon; Anita R Caron; Willam D. Duncan; Joe E Flack; Melissa Anne Haendel; Nomi Harris et al.
Source: check_circle
DataCite
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Do-calculus enables estimation of causal effects in partially observed biomolecular pathways

2022-10 | Preprint
PPR: PPR562063
Contributors: Mohammad-Taheri S; Zucker J; Hoyt CT; Sachs K; Tewari V; Ness R; Vitek aO
Source: Self-asserted source
Charles Tapley Hoyt via Europe PubMed Central

Benchmark Datasets for Inductive Entity Alignment

OpenAlex
2022-08-11 | Other
DOI: 10.60692/5mf5m-mmj66
Contributors: Daniel Obraczka; Max Berrendorf; Charles Tapley Hoyt; Michael Galkin; Erhard Rahm
Source: check_circle
DataCite

Benchmark Datasets for Inductive Entity Alignment

OpenAlex
2022-08-11 | Other
DOI: 10.60692/6ma7x-c8k54
Contributors: Daniel Obraczka; Max Berrendorf; Charles Tapley Hoyt; Michael Galkin; Erhard Rahm
Source: check_circle
DataCite

Benchmark Datasets for Inductive Entity Alignment

OpenAlex
2022-08-11 | Other
DOI: 10.60692/w3xjs-3fe54
Contributors: Daniel Obraczka; Max Berrendorf; Charles Tapley Hoyt; Michael Galkin; Erhard Rahm
Source: check_circle
DataCite
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Items per page:
Page 1 of 2

Peer review (3 reviews for 2 publications/grants)

Review activity for Journal of biomedical semantics. (1)
Review activity for Journal of cheminformatics. (2)
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