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APOC1 apolipoprotein C1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 743864, updated on 29-Mar-2024

Summary

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Official Symbol
APOC1provided by VGNC
Official Full Name
apolipoprotein C1provided by VGNC
Primary source
VGNC:VGNC:10193
Locus tag
CK820_G0049413
See related
Ensembl:ENSPTRG00000011128
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
APOC1B; Apo-CIB; ApoC-IB
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (47871254..47875745)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (47871278..47875769)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 40 Neighboring gene apolipoprotein E Neighboring gene Apolipoprotein C-I, acidic form Neighboring gene apolipoprotein C4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Detection of two distinct forms of apoC-I in great apes. Puppione DL, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2010 Mar. PMID 20209111, Free PMC Article
  2. Initial sequence of the chimpanzee genome and comparison with the human genome. Chimpanzee Sequencing and Analysis Consortium. Nature, 2005 Sep 1. PMID 16136131

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of lipoprotein lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein C-I, basic form
Names
Apolipoprotein C-I, basic form
Apolipoprotein C1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    47871254..47875745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054673561.1 → XP_054529536.1  apolipoprotein C-I, basic form isoform X1

  2. XM_003316444.4 → XP_003316492.2  apolipoprotein C-I, basic form isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CE38.1 GenPept UniProtKB/Swiss-Prot:P0CE38

Gene LinkOut

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Molecular Biology Databases
Research Materials
Miscellaneous