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CALM1 calmodulin 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 738819, updated on 3-Apr-2024

Summary

Official Symbol
CALM1provided by VGNC
Official Full Name
calmodulin 1provided by VGNC
Primary source
VGNC:VGNC:57247
Locus tag
CK820_G0003123
See related
Ensembl:ENSPTRG00000006626
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 15 NC_072413.2 (88402359..88413585)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 14 NC_072412.1 (81686272..81697499)

Chromosome 15 - NC_072413.2Genomic Context describing neighboring genes Neighboring gene NRDE-2, necessary for RNA interference, domain containing Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene uncharacterized LOC107968233 Neighboring gene uncharacterized LOC134808312

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
calmodulin-1
NP_001104289.1
XP_063648823.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110819.1NP_001104289.1  calmodulin-1

    See identical proteins and their annotated locations for NP_001104289.1

    Status: PROVISIONAL

    Source sequence(s)
    AB222133
    UniProtKB/TrEMBL
    A5A6K5
    Related
    ENSPTRP00000043284.4, ENSPTRT00000047828.5
    Conserved Domains (2) summary
    PTZ00184
    Location:1149
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:85147
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072413.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    88402359..88413585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063792753.1XP_063648823.1  calmodulin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3T0L7, A0A2J8PKY0, A0A6D2WEC1