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TBP TATA-box binding protein [ Canis lupus familiaris (dog) ]

Gene ID: 611193, updated on 5-Mar-2024

Summary

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Official Symbol
TBPprovided by VGNC
Official Full Name
TATA-box binding proteinprovided by VGNC
Primary source
VGNC:VGNC:47164
See related
Ensembl:ENSCAFG00845023066
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (73444412..73464611)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (72221201..72241583)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (72930358..72950554)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (72717146..72737106)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (72539334..72559523)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-2(I) chain-like Neighboring gene proteasome 20S subunit beta 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene programmed cell death 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chromatin interaction of TATA-binding protein is dynamically regulated in human cells. de Graaf P, et al. J Cell Sci, 2010 Aug 1. PMID 20627952
  2. Comparative radiation hybrid map of canine chromosome 1 incorporating SNP and indel polymorphisms. Housley DJ, et al. Genomics, 2004 Aug. PMID 15233990

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Results support a model for a BTAF1-mediated release of TBP-NC2 complexes from chromatin.
    Title: Chromatin interaction of TATA-binding protein is dynamically regulated in human cells.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA-box-binding protein
Names
TATA binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    73444412..73464611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038684467.1 → XP_038540395.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  2. XM_038684466.1 → XP_038540394.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Related
    ENSCAFP00845031876.1, ENSCAFT00845040722.1
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  3. XM_038684469.1 → XP_038540397.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  4. XM_038684468.1 → XP_038540396.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    72717146..72737106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038492721.1 → XP_038348649.1  TATA-box-binding protein

  2. XM_038492720.1 → XP_038348648.1  TATA-box-binding protein

  3. XM_038492723.1 → XP_038348651.1  TATA-box-binding protein

  4. XM_038492722.1 → XP_038348650.1  TATA-box-binding protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    72539334..72559523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038618908.1 → XP_038474836.1  TATA-box-binding protein

    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  2. XM_038618907.1 → XP_038474835.1  TATA-box-binding protein

    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  3. XM_038618910.1 → XP_038474838.1  TATA-box-binding protein

    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  4. XM_038618909.1 → XP_038474837.1  TATA-box-binding protein

    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    72930358..72950554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038555038.1 → XP_038410966.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  2. XM_038555037.1 → XP_038410965.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  3. XM_038555040.1 → XP_038410968.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  4. XM_038555039.1 → XP_038410967.1  TATA-box-binding protein

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    72221201..72241583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_849432.6 → XP_854525.1  TATA-box-binding protein

    See identical proteins and their annotated locations for XP_854525.1

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  2. XM_005627735.4 → XP_005627792.1  TATA-box-binding protein

    See identical proteins and their annotated locations for XP_005627792.1

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  3. XM_005627737.4 → XP_005627794.1  TATA-box-binding protein

    See identical proteins and their annotated locations for XP_005627794.1

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional

  4. XM_005627736.4 → XP_005627793.1  TATA-box-binding protein

    See identical proteins and their annotated locations for XP_005627793.1

    UniProtKB/TrEMBL
    A0A8C0L5C0, A0A8C0N7G7, A0A8C0SED0, A0A8I3PUG8
    Conserved Domains (1) summary
    PLN00062
    Location:147 → 323
    PLN00062; TATA-box-binding protein; Provisional
Nucleotide Protein
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