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GTF2F2 general transcription factor IIF subunit 2 [ Canis lupus familiaris (dog) ]

Gene ID: 609164, updated on 5-Mar-2024

Summary

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Official Symbol
GTF2F2provided by VGNC
Official Full Name
general transcription factor IIF subunit 2provided by VGNC
Primary source
VGNC:VGNC:111515
See related
Ensembl:ENSCAFG00845009386
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 22 NC_051826.1 (5874727..6021679, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 22 NC_006604.4 (5746258..5893477, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 22 NC_049243.1 (5725554..5872788, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 22 NC_049282.1 (5656913..5804112, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 22 NC_049763.1 (5720078..5867540, complement)

Chromosome 22 - NC_051826.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102155887 Neighboring gene small nucleolar RNA SNORA46 Neighboring gene potassium channel tetramerization domain containing 4 Neighboring gene nucleophosmin-like Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene GPALPP motifs containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIF subunit 2
XP_038286932.1
XP_038362311.1
XP_038425512.1
XP_038489678.1
XP_851466.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051826.1 Reference ROS_Cfam_1.0

    Range
    5874727..6021679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038431004.1 → XP_038286932.1  general transcription factor IIF subunit 2

    UniProtKB/TrEMBL
    A0A8C0L288, A0A8C0P9T5, A0A8I3N8L3
    Related
    ENSCAFP00845012871.1, ENSCAFT00845016549.1
    Conserved Domains (1) summary
    cl02122
    Location:6 → 247
    TFIIF_beta; Transcription initiation factor IIF, beta subunit

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049282.1 Alternate UMICH_Zoey_3.1

    Range
    5656913..5804112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038506383.1 → XP_038362311.1  general transcription factor IIF subunit 2

    Conserved Domains (1) summary
    cl02122
    Location:6 → 247
    TFIIF_beta; Transcription initiation factor IIF, beta subunit

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049763.1 Alternate UNSW_CanFamBas_1.0

    Range
    5720078..5867540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633750.1 → XP_038489678.1  general transcription factor IIF subunit 2

    Conserved Domains (1) summary
    cl02122
    Location:6 → 247
    TFIIF_beta; Transcription initiation factor IIF, beta subunit

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049243.1 Alternate UU_Cfam_GSD_1.0

    Range
    5725554..5872788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569584.1 → XP_038425512.1  general transcription factor IIF subunit 2

    UniProtKB/TrEMBL
    A0A8C0L288, A0A8C0P9T5, A0A8I3N8L3
    Conserved Domains (1) summary
    cl02122
    Location:6 → 247
    TFIIF_beta; Transcription initiation factor IIF, beta subunit

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006604.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    5746258..5893477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_846373.6 → XP_851466.2  general transcription factor IIF subunit 2

    See identical proteins and their annotated locations for XP_851466.2

    UniProtKB/TrEMBL
    A0A8C0L288, A0A8C0P9T5, A0A8I3N8L3
    Conserved Domains (1) summary
    cl02122
    Location:6 → 247
    TFIIF_beta; Transcription initiation factor IIF, beta subunit
Nucleotide Protein
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