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EIF3B eukaryotic translation initiation factor 3 subunit B [ Canis lupus familiaris (dog) ]

Gene ID: 479766, updated on 5-Mar-2024

Summary

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Official Symbol
EIF3Bprovided by VGNC
Official Full Name
eukaryotic translation initiation factor 3 subunit Bprovided by VGNC
Primary source
VGNC:VGNC:40269
See related
Ensembl:ENSCAFG00845006693
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
EIF3S9
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (14906371..14929004, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (16242639..16265270, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (14924356..14946923, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (14709937..14732572, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (14638275..14660849, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 12 Neighboring gene kinesin-like protein KIF19 Neighboring gene uncharacterized LOC111096238 Neighboring gene sorting nexin 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 3 subunit B; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B
Names
eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    14906371..14929004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668444.1 → XP_038524372.1  eukaryotic translation initiation factor 3 subunit B

    UniProtKB/TrEMBL
    A0A8C0L7V1
    Related
    ENSCAFP00845009274.1, ENSCAFT00845011885.1
    Conserved Domains (3) summary
    COG5354
    Location:276 → 776
    COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
    sd00039
    Location:347 → 394
    7WD40; WD40 repeat [structural motif]
    cd12278
    Location:155 → 235
    RRM_eIF3B; RNA recognition motif (RRM) found in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins

RNA

  1. XR_005428343.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    14709937..14732572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038478391.1 → XP_038334319.1  eukaryotic translation initiation factor 3 subunit B

    Conserved Domains (3) summary
    COG5354
    Location:276 → 776
    COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
    sd00039
    Location:347 → 394
    7WD40; WD40 repeat [structural motif]
    cd12278
    Location:155 → 235
    RRM_eIF3B; RNA recognition motif (RRM) found in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins

RNA

  1. XR_005326778.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    14638275..14660849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038603727.1 → XP_038459655.1  LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit B

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    14924356..14946923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539644.1 → XP_038395572.1  eukaryotic translation initiation factor 3 subunit B

    UniProtKB/TrEMBL
    A0A8C0L7V1
    Conserved Domains (3) summary
    COG5354
    Location:276 → 776
    COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
    sd00039
    Location:347 → 394
    7WD40; WD40 repeat [structural motif]
    cd12278
    Location:155 → 235
    RRM_eIF3B; RNA recognition motif (RRM) found in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins

RNA

  1. XR_005360674.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    16242639..16265270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_536894.7 → XP_536894.5  eukaryotic translation initiation factor 3 subunit B

    UniProtKB/TrEMBL
    A0A8C0L7V1
    Conserved Domains (3) summary
    COG5354
    Location:276 → 776
    COG5354; Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
    sd00039
    Location:347 → 394
    7WD40; WD40 repeat [structural motif]
    cd12278
    Location:155 → 235
    RRM_eIF3B; RNA recognition motif (RRM) found in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins

RNA

  1. XR_005361346.1 RNA Sequence

Nucleotide Protein
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