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APOA1 apolipoprotein A1 [ Canis lupus familiaris (dog) ]

Gene ID: 479427, updated on 5-Mar-2024

Summary

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Official Symbol
APOA1provided by VGNC
Official Full Name
apolipoprotein A1provided by VGNC
Primary source
VGNC:VGNC:37991
See related
Ensembl:ENSCAFG00845004266
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
Apo-AI; ApoA-I
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (16686357..16688357)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (16792234..16794244)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (16768944..16770956)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (16823454..16825453)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (16726037..16728039)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene SIK family kinase 3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119871806 Neighboring gene apolipoprotein C3 Neighboring gene apolipoprotein A4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high-density lipoprotein particle receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein A-I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    16686357..16688357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038664256.1 → XP_038520184.1  apolipoprotein A-I

    UniProtKB/Swiss-Prot
    P02648
    UniProtKB/TrEMBL
    A0A8C0JPT4, A0A8C0Q1U9, A0A8I3MSG4
    Related
    ENSCAFP00845006071.1, ENSCAFT00845007678.1
    Conserved Domains (1) summary
    pfam01442
    Location:73 → 241
    Apolipoprotein; Apolipoprotein A1/A4/E domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    16823454..16825453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038474926.1 → XP_038330854.1  apolipoprotein A-I

    Conserved Domains (1) summary
    pfam01442
    Location:73 → 241
    Apolipoprotein; Apolipoprotein A1/A4/E domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    16726037..16728039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038600246.1 → XP_038456174.1  apolipoprotein A-I

    Conserved Domains (1) summary
    pfam01442
    Location:73 → 241
    Apolipoprotein; Apolipoprotein A1/A4/E domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    16768944..16770956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038536053.1 → XP_038391981.1  apolipoprotein A-I

    UniProtKB/Swiss-Prot
    P02648
    UniProtKB/TrEMBL
    A0A8C0JPT4, A0A8C0Q1U9, A0A8I3MSG4
    Conserved Domains (1) summary
    pfam01442
    Location:73 → 241
    Apolipoprotein; Apolipoprotein A1/A4/E domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    16792234..16794244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014113398.2 → XP_013968873.1  apolipoprotein A-I

    UniProtKB/Swiss-Prot
    P02648
    UniProtKB/TrEMBL
    A0A8C0JPT4, A0A8C0Q1U9, A0A8I3MSG4
    Conserved Domains (1) summary
    pfam01442
    Location:73 → 241
    Apolipoprotein; Apolipoprotein A1/A4/E domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P02648.2 GenPept UniProtKB/Swiss-Prot:P02648

Gene LinkOut

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