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PYGB glycogen phosphorylase B [ Canis lupus familiaris (dog) ]

Gene ID: 477003, updated on 5-Mar-2024

Summary

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Official Symbol
PYGBprovided by VGNC
Official Full Name
glycogen phosphorylase Bprovided by VGNC
Primary source
VGNC:VGNC:52899
See related
Ensembl:ENSCAFG00845028916
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (1681167..1734965)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (1470378..1524112)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (1613910..1667799)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (1521968..1575698)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (1646573..1700313)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6 Neighboring gene U4 spliceosomal RNA Neighboring gene abhydrolase domain containing 12, lysophospholipase Neighboring gene ubiquitin-conjugating enzyme E2 L3-like Neighboring gene GINS complex subunit 1 Neighboring gene ninein like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, brain form
Names
phosphorylase, glycogen; brain
XP_003433179.2
XP_038287601.1
XP_038362941.1
XP_038426155.1
XP_038490333.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    1681167..1734965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038431673.1 → XP_038287601.1  glycogen phosphorylase, brain form

    UniProtKB/TrEMBL
    A0A8C0QVY6, A0A8C0SH04, A0A8C0SJL7, A0A8I3Q6I7
    Related
    ENSCAFP00845040051.1, ENSCAFT00845051086.1
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    1521968..1575698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507013.1 → XP_038362941.1  glycogen phosphorylase, brain form

    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    1646573..1700313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038634405.1 → XP_038490333.1  glycogen phosphorylase, brain form

    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    1613910..1667799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038570227.1 → XP_038426155.1  glycogen phosphorylase, brain form

    UniProtKB/TrEMBL
    A0A8C0QVY6, A0A8C0SH04, A0A8C0SJL7, A0A8I3Q6I7
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    1470378..1524112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003433131.5 → XP_003433179.2  glycogen phosphorylase, brain form

    UniProtKB/TrEMBL
    A0A8C0QVY6, A0A8C0SH04, A0A8C0SJL7, A0A8I3Q6I7
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
Nucleotide Protein
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