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GTF2H1 general transcription factor IIH subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 476881, updated on 5-Mar-2024

Summary

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Official Symbol
GTF2H1provided by VGNC
Official Full Name
general transcription factor IIH subunit 1provided by VGNC
Primary source
VGNC:VGNC:41547
See related
Ensembl:ENSCAFG00845016048
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (41894288..41930625)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (40250242..40286596)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (41452829..41489189)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (40886602..40922934)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (41075253..41111663)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene serum amyloid A protein-like Neighboring gene HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 Neighboring gene uncharacterized LOC111091573 Neighboring gene lactate dehydrogenase A Neighboring gene mitochondrial import receptor subunit TOM7 homolog Neighboring gene lactate dehydrogenase C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor IIH subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    41894288..41930625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038430654.1 → XP_038286582.1  general transcription factor IIH subunit 1

    UniProtKB/TrEMBL
    A0A8C0L248, A0A8C0P8L8, A0A8I3NYI3
    Related
    ENSCAFP00845022484.1, ENSCAFT00845028576.1
    Conserved Domains (2) summary
    smart00751
    Location:182 → 232
    BSD; domain in transcription factors and synapse-associated proteins
    cd13229
    Location:9 → 102
    PH_TFIIH; Transcription Factor II H (TFIIH) Pleckstrin homology (PH) domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    40886602..40922934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038505979.1 → XP_038361907.1  general transcription factor IIH subunit 1

    Conserved Domains (2) summary
    smart00751
    Location:182 → 232
    BSD; domain in transcription factors and synapse-associated proteins
    cd13229
    Location:9 → 102
    PH_TFIIH; Transcription Factor II H (TFIIH) Pleckstrin homology (PH) domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    41075253..41111663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633394.1 → XP_038489322.1  general transcription factor IIH subunit 1

    Conserved Domains (2) summary
    smart00751
    Location:182 → 232
    BSD; domain in transcription factors and synapse-associated proteins
    cd13229
    Location:9 → 102
    PH_TFIIH; Transcription Factor II H (TFIIH) Pleckstrin homology (PH) domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    41452829..41489189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569202.1 → XP_038425130.1  general transcription factor IIH subunit 1

    UniProtKB/TrEMBL
    A0A8C0L248, A0A8C0P8L8, A0A8I3NYI3
    Conserved Domains (2) summary
    smart00751
    Location:182 → 232
    BSD; domain in transcription factors and synapse-associated proteins
    cd13229
    Location:9 → 102
    PH_TFIIH; Transcription Factor II H (TFIIH) Pleckstrin homology (PH) domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    40250242..40286596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014122658.3 → XP_013978133.1  general transcription factor IIH subunit 1

    UniProtKB/TrEMBL
    A0A8C0L248, A0A8C0P8L8, A0A8I3NYI3
    Conserved Domains (2) summary
    smart00751
    Location:182 → 232
    BSD; domain in transcription factors and synapse-associated proteins
    cd13229
    Location:9 → 102
    PH_TFIIH; Transcription Factor II H (TFIIH) Pleckstrin homology (PH) domain
Nucleotide Protein
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