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GYG1 glycogenin 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 460765, updated on 29-Mar-2024

Summary

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Official Symbol
GYG1provided by VGNC
Official Full Name
glycogenin 1provided by VGNC
Primary source
VGNC:VGNC:1834
Locus tag
CK820_G0006400
See related
Ensembl:ENSPTRG00000015509
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 2 NC_086015.1 (152188673..152225021)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 3 NC_072401.1 (152098060..152134391)

Chromosome 2 - NC_086015.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase A3 Neighboring gene ubiquilin-4-like Neighboring gene helicase like transcription factor Neighboring gene HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 Neighboring gene ceruloplasmin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogenin-1
XP_003310161.2
XP_003310162.2
XP_516810.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086015.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    152188673..152225021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_516810.7 → XP_516810.4  glycogenin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SYS9, A0A2J8P2V5, A0A6D2VVY6, K7AGZ2
    Related
    ENSPTRP00000072825.1
    Conserved Domains (1) summary
    cd02537
    Location:4 → 254
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_003310114.5 → XP_003310162.2  glycogenin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8P2U2, A0A6D2Y3V6, K7BSW1
    Related
    ENSPTRP00000070941.1
    Conserved Domains (1) summary
    cd02537
    Location:4 → 201
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  3. XM_003310113.4 → XP_003310161.2  glycogenin-1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SYS9, A0A2J8P2W5, A0A6D2VS91, H2QNJ7
    Related
    ENSPTRP00000026705.5
    Conserved Domains (1) summary
    cd02537
    Location:4 → 254
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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