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PDE1A phosphodiesterase 1A [ Pan troglodytes (chimpanzee) ]

Gene ID: 459797, updated on 3-Apr-2024

Summary

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Official Symbol
PDE1Aprovided by VGNC
Official Full Name
phosphodiesterase 1Aprovided by VGNC
Primary source
VGNC:VGNC:2750
Locus tag
CK820_G0001672
See related
Ensembl:ENSPTRG00000012706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2B
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (84171123..84562969, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (84171086..84562746, complement)

Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene keratin, type I cytoskeletal 18-like Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1C Neighboring gene uncharacterized LOC129143318 Neighboring gene DnaJ heat shock protein family (Hsp40) member C10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
phosphodiesterase 1A, calmodulin-dependent
NP_001266861.1
XP_009441944.4
XP_009441945.4
XP_009441946.4
XP_009441948.4
XP_009441949.4
XP_009441952.4
XP_009441953.4
XP_009441958.4
XP_009441959.2
XP_009441960.4
XP_009441962.1
XP_009441963.1
XP_009441964.1
XP_016804824.3
XP_016804828.1
XP_024210460.2
XP_054534782.1
XP_054534785.1
XP_054534786.1
XP_054534787.1
XP_054534788.1
XP_063646314.1
XP_063646315.1
XP_063646316.1
XP_063646317.1
XP_063646318.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001279932.1 → NP_001266861.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A

    See identical proteins and their annotated locations for NP_001266861.1

    Status: PROVISIONAL

    Source sequence(s)
    AK306507
    UniProtKB/TrEMBL
    A0A2J8PRM7, G2HIE3
    Conserved Domains (2) summary
    pfam00233
    Location:184 → 400
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:43 → 99
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    84171123..84562969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063790247.1 → XP_063646317.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X10

    UniProtKB/TrEMBL
    H2QJ34

  2. XM_063790245.1 → XP_063646315.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X10

    UniProtKB/TrEMBL
    H2QJ34

  3. XM_063790246.1 → XP_063646316.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X10

    UniProtKB/TrEMBL
    H2QJ34

  4. XM_009443685.5 → XP_009441960.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X10

    UniProtKB/TrEMBL
    H2QJ34

  5. XM_063790244.1 → XP_063646314.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X10

    UniProtKB/TrEMBL
    H2QJ34

  6. XM_009443687.3 → XP_009441962.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X14

    UniProtKB/TrEMBL
    A0A2I3RJX4, A0A2J8PRP9
    Conserved Domains (2) summary
    pfam00233
    Location:202 → 418
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:61 → 117
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  7. XM_009443677.5 → XP_009441952.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X6

  8. XM_016949339.3 → XP_016804828.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X17

    UniProtKB/TrEMBL
    A0A2I3RJX4

  9. XM_054678807.2 → XP_054534782.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

  10. XM_009443670.5 → XP_009441945.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

  11. XM_009443671.5 → XP_009441946.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

  12. XM_009443678.5 → XP_009441953.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X7

  13. XM_009443673.5 → XP_009441948.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

  14. XM_009443669.5 → XP_009441944.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

  15. XM_009443684.5 → XP_009441959.2  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X9

  16. XM_063790248.1 → XP_063646318.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X12

  17. XM_054678811.2 → XP_054534786.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X12

  18. XM_009443683.5 → XP_009441958.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X8

  19. XM_024354692.3 → XP_024210460.2  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

  20. XM_009443674.5 → XP_009441949.4  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X3

  21. XM_009443688.5 → XP_009441963.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X15

    See identical proteins and their annotated locations for XP_009441963.1

    UniProtKB/TrEMBL
    A0A2I3RJX4, A0A2J8PRN7
    Conserved Domains (2) summary
    pfam00233
    Location:202 → 418
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:61 → 117
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  22. XM_054678812.2 → XP_054534787.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X13

  23. XM_009443689.5 → XP_009441964.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X18

    See identical proteins and their annotated locations for XP_009441964.1

    UniProtKB/TrEMBL
    A0A2I3RA11, A0A2I3RJX4, A0A2J8PRM7, A0A2J8PRM9, A0A6D2X0Z1
    Related
    ENSPTRP00000061460.1
    Conserved Domains (2) summary
    pfam00233
    Location:184 → 400
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:43 → 99
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  24. XM_016949335.4 → XP_016804824.3  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X5

  25. XM_054678813.2 → XP_054534788.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X16

  26. XM_054678810.2 → XP_054534785.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X11

RNA

  1. XR_010149661.1 RNA Sequence

  2. XR_010149662.1 RNA Sequence

  3. XR_010149660.1 RNA Sequence

  4. XR_010149667.1 RNA Sequence

  5. XR_010149664.1 RNA Sequence

  6. XR_010149668.1 RNA Sequence

  7. XR_010149666.1 RNA Sequence

  8. XR_010149665.1 RNA Sequence

  9. XR_008546525.2 RNA Sequence

  10. XR_010149663.1 RNA Sequence

Nucleotide Protein
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