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RXRG retinoid X receptor gamma [ Pan troglodytes (chimpanzee) ]

Gene ID: 457476, updated on 29-Mar-2024

Summary

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Official Symbol
RXRGprovided by VGNC
Official Full Name
retinoid X receptor gammaprovided by VGNC
Primary source
VGNC:VGNC:1534
Locus tag
CK820_G0027854
See related
Ensembl:ENSPTRG00000023788
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (83664575..83709354)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (147640378..147684852, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS5-like Neighboring gene leucine rich repeat containing 52 Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene uncharacterized LOC112205874 Neighboring gene uncharacterized LOC107969132

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    83664575..83709354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_513962.7 → XP_513962.2  retinoic acid receptor RXR-gamma isoform X1

    See identical proteins and their annotated locations for XP_513962.2

    UniProtKB/TrEMBL
    A0A2I3T6L6, A0A2J8LM28, A0A6D2W6J8, H2R383
    Related
    ENSPTRP00000045051.3
    Conserved Domains (3) summary
    cd06943
    Location:233 → 441
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:137 → 213
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
    pfam11825
    Location:25 → 133
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

  2. XM_003949632.6 → XP_003949681.1  retinoic acid receptor RXR-gamma isoform X2

    See identical proteins and their annotated locations for XP_003949681.1

    UniProtKB/TrEMBL
    A0A2I3T4S3, A0A2J8LM29, A0A6D2W2J6
    Related
    ENSPTRP00000084240.1
    Conserved Domains (2) summary
    cd06943
    Location:110 → 318
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:14 → 90
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
Nucleotide Protein
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