POLR3B RNA polymerase III subunit B [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: POLR3Bprovided by VGNC
Official Full Name: RNA polymerase III subunit Bprovided by VGNC
Primary source: VGNC:VGNC:8502
Locus tag: CK820_G0016022
See related: Ensembl:ENSPTRG00000005390
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 29

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	10	NC_072408.2 (113172683..113319628)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	12	NC_072410.1 (111794872..111942542)

Chromosome 10 - NC_072408.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

D12S2107 (e-PCR)
- UniSTS:17939

POLR3B_3605 (e-PCR)
- UniSTS:462434

RH44491 (e-PCR)
- UniSTS:48020

RH121563 (e-PCR)
- UniSTS:134335

STS-R59312 (e-PCR)
- UniSTS:81343

G54249 (e-PCR)
- UniSTS:109516

SHGC-79768 (e-PCR)
- UniSTS:101087

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase III activity	IEA Inferred from Electronic Annotation more info	PubMed
enables ribonucleoside binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of RNA polymerase III complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: DNA-directed RNA polymerase III subunit RPC2

Names: polymerase (RNA) III (DNA directed) polypeptide B; polymerase (RNA) III subunit B

XP_001161567.1

EC 2.7.7.6

XP_063643159.1

EC 2.7.7.6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

113172683..113319628

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001161567.8 → XP_001161567.1 DNA-directed RNA polymerase III subunit RPC2 isoform X1

See identical proteins and their annotated locations for XP_001161567.1

UniProtKB/TrEMBL

A0A2I3RLS4, A0A2J8MZP6, A0A6D2VVV7, H2Q6S4

Related

ENSPTRP00000065660.1

Conserved Domains (3) summary

cd00653
Location:39 → 1127

RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...

pfam04566
Location:539 → 600

RNA_pol_Rpb2_4; RNA polymerase Rpb2, domain 4

pfam04567
Location:621 → 661

RNA_pol_Rpb2_5; RNA polymerase Rpb2, domain 5
XM_063787089.1 → XP_063643159.1 DNA-directed RNA polymerase III subunit RPC2 isoform X2

UniProtKB/TrEMBL

A0A2J8MZR0