SCD stearoyl-CoA desaturase [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: SCDprovided by VGNC
Official Full Name: stearoyl-CoA desaturaseprovided by VGNC
Primary source: VGNC:VGNC:10458
Locus tag: CK820_G0004138
See related: Ensembl:ENSPTRG00000002847
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human all
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Genomic context

Location:: chromosome: 10

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	8	NC_072406.2 (112448720..112466864)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	10	NC_072408.1 (103063515..103081283)

Chromosome 8 - NC_072406.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

RH11040 (e-PCR)
- UniSTS:87682

RH11186 (e-PCR)
- UniSTS:64152

D10S2199 (e-PCR)
- UniSTS:64153

STS-S70284 (e-PCR)
- UniSTS:48810

SHGC-34978 (e-PCR)
- UniSTS:5557

RH45424 (e-PCR)
- UniSTS:5820

RH11163 (e-PCR)
- UniSTS:58300

A002P35 (e-PCR)
- UniSTS:49098

D10S1355E (e-PCR)
- UniSTS:47070

IB293 (e-PCR)
- UniSTS:17890

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables iron ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables palmitoyl-CoA 9-desaturase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables stearoyl-CoA 9-desaturase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in monounsaturated fatty acid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in response to fatty acid	IEA Inferred from Electronic Annotation more info	PubMed
involved_in unsaturated fatty acid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: stearoyl-CoA desaturase

Names: stearoyl-CoA desaturase (delta-9-desaturase)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072406.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

112448720..112466864

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001168563.7 → XP_001168563.1 stearoyl-CoA desaturase

See identical proteins and their annotated locations for XP_001168563.1

UniProtKB/TrEMBL

A0A2I3S5X4, A0A2J8PDE4, A0A6D2XEW3, H2Q2F3

Related

ENSPTRP00000005002.2

Conserved Domains (1) summary

cd03505
Location:100 → 337

Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...