gtf3aa general transcription factor IIIAa [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gtf3aaprovided by ZNC
Official Full Name: general transcription factor IIIAaprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041006-1
See related: Ensembl:ENSDARG00000030267 AllianceGenome:ZFIN:ZDB-GENE-041006-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gtf3a; TFIIIA; zgc:111799
Summary: Predicted to enable metal ion binding activity. Predicted to be active in nucleus. Is expressed in brain; muscle; ovary; and testis. Orthologous to human GTF3A (general transcription factor IIIA). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (67980191..67993075, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (67301648..67315381, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: general transcription factor IIIAa

Names: transcription factor IIIA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003866.1 → NP_001003866.1 general transcription factor IIIAa

See identical proteins and their annotated locations for NP_001003866.1

Status: PROVISIONAL

Source sequence(s)

AY648780

UniProtKB/TrEMBL

Q6DRH9

Related

ENSDARP00000049330.5, ENSDART00000049331.7

Conserved Domains (2) summary

COG5048
Location:58 → 226

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:114 → 133

ZF_C2H2; C2H2 Zn finger [structural motif]