snrnp40 small nuclear ribonucleoprotein 40 (U5) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: snrnp40provided by ZNC
Official Full Name: small nuclear ribonucleoprotein 40 (U5)provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-978
See related: Ensembl:ENSDARG00000023160 AllianceGenome:ZFIN:ZDB-GENE-040426-978
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wdr57; zgc:56312
Summary: Predicted to be part of catalytic step 2 spliceosome. Orthologous to human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (43004454..43016395)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (43435017..43446958)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: U5 small nuclear ribonucleoprotein 40 kDa protein

Names: WD repeat domain 57 (U5 snRNP specific)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200322.1 → NP_956616.1 U5 small nuclear ribonucleoprotein 40 kDa protein

See identical proteins and their annotated locations for NP_956616.1

Status: PROVISIONAL

Source sequence(s)

BC051783

UniProtKB/TrEMBL

A0A8N7V011, Q7ZTY9

Related

ENSDARP00000038728.7, ENSDART00000038230.8

Conserved Domains (3) summary

COG2319
Location:48 → 347

WD40; WD40 repeat [General function prediction only]

cd00200
Location:52 → 343

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:59 → 97

7WD40; WD40 repeat [structural motif]