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IFIT3 interferon induced protein with tetratricopeptide repeats 3 [ Homo sapiens (human) ]

Gene ID: 3437, updated on 5-Mar-2024

Summary

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Official Symbol
IFIT3provided by HGNC
Official Full Name
interferon induced protein with tetratricopeptide repeats 3provided by HGNC
Primary source
HGNC:HGNC:5411
See related
Ensembl:ENSG00000119917 MIM:604650; AllianceGenome:HGNC:5411
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
P60; IRG2; IFI60; IFIT4; ISG60; RIG-G; cig41; CIG-49; GARG-49
Summary
Enables identical protein binding activity. Involved in negative regulation of apoptotic process; negative regulation of cell population proliferation; and response to virus. Located in cytosol and mitochondrion. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in spleen (RPKM 22.6), lung (RPKM 21.1) and 24 other tissues See more
Orthologs
all
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Genomic context

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Location:
10q23.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (89327997..89340968)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (90211865..90224839)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (91087754..91100725)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902477 Neighboring gene uncharacterized LOC105378419 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3739 Neighboring gene interferon induced protein with tetratricopeptide repeats 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3740 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3741 Neighboring gene uncharacterized LOC101926887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2592 Neighboring gene Sharpr-MPRA regulatory region 6014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3743 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3746 Neighboring gene interferon induced protein with tetratricopeptide repeats 6, pseudogene Neighboring gene interferon induced protein with tetratricopeptide repeats 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. IFIT3 Is Increased in Serum from Patients with Chronic Hepatitis B Virus (HBV) Infection and Promotes the Anti-HBV Effect of Interferon Alpha via JAK-STAT2 In Vitro. Xu S, et al. Microbiol Spectr, 2022 Dec 21. PMID 36314949, Free PMC Article
  2. IFIT3 (interferon induced protein with tetratricopeptide repeats 3) modulates STAT1 expression in small extracellular vesicles. Naranjo NM, et al. Biochem J, 2021 Nov 12. PMID 34622927, Free PMC Article
  3. Retinoic Acid-Induced Gene G(RIG-G) as a Novel Monitoring Biomarker in Leukemia and Its Clinical Applications. Wang F, et al. Genes (Basel), 2021 Jul 2. PMID 34356051, Free PMC Article
  4. Interferon-induced protein with tetratricopeptide repeats 3 may be a key factor in primary biliary cholangitis. Sasaki M, et al. Sci Rep, 2021 Jun 1. PMID 34075171, Free PMC Article
  5. Interferon-Induced Protein With Multiple Tetratricopeptide Repeats 3 Is Associated With Response to Chemotherapy and Recurrence but Not With Survival. Popp MC, et al. Pancreas, 2020 Nov/Dec. PMID 33122518

See all (83) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. IFIT3 accelerates the progression of head and neck squamous cell carcinoma by targeting PD-L1 to activate PI3K/AKT signaling pathway.
    Title: IFIT3 accelerates the progression of head and neck squamous cell carcinoma by targeting PD-L1 to activate PI3K/AKT signaling pathway.
  2. NMI promotes tumor progression and gemcitabine resistance in pancreatic cancer via STAT3-IFIT3 axis.
    Title: NMI promotes tumor progression and gemcitabine resistance in pancreatic cancer via STAT3-IFIT3 axis.
  3. ETV7 promotes colorectal cancer progression through upregulation of IFIT3.
    Title: ETV7 promotes colorectal cancer progression through upregulation of IFIT3.
  4. Lysyl oxidase-like 2 promotes stemness and enhances antitumor effects of gefitinib in head and neck cancer via IFIT1 and IFIT3.
    Title: Lysyl oxidase-like 2 promotes stemness and enhances antitumor effects of gefitinib in head and neck cancer via IFIT1 and IFIT3.
  5. IFIT3 Is Increased in Serum from Patients with Chronic Hepatitis B Virus (HBV) Infection and Promotes the Anti-HBV Effect of Interferon Alpha via JAK-STAT2 In Vitro.
    Title: IFIT3 Is Increased in Serum from Patients with Chronic Hepatitis B Virus (HBV) Infection and Promotes the Anti-HBV Effect of Interferon Alpha via JAK-STAT2 In Vitro.
  6. Evaluation of IFIT3 and ORM1 as Biomarkers for Discriminating Active Tuberculosis from Latent Infection.
    Title: Evaluation of IFIT3 and ORM1 as Biomarkers for Discriminating Active Tuberculosis from Latent Infection.
  7. Comprehensive analysis of the prognosis and biological significance for IFIT family in skin cutaneous melanoma.
    Title: Comprehensive analysis of the prognosis and biological significance for IFIT family in skin cutaneous melanoma.
  8. Human IFIT3 Protein Induces Interferon Signaling and Inhibits Adenovirus Immediate Early Gene Expression.
    Title: Human IFIT3 Protein Induces Interferon Signaling and Inhibits Adenovirus Immediate Early Gene Expression.
  9. Retinoic Acid-Induced Gene G(RIG-G) as a Novel Monitoring Biomarker in Leukemia and Its Clinical Applications.
    Title: Retinoic Acid-Induced Gene G(RIG-G) as a Novel Monitoring Biomarker in Leukemia and Its Clinical Applications.
  10. Identified Three Interferon Induced Proteins as Novel Biomarkers of Human Ischemic Cardiomyopathy.
    Title: Identified Three Interferon Induced Proteins as Novel Biomarkers of Human Ischemic Cardiomyopathy.
Submit: New GeneRIF Correction See all GeneRIFs (46)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Tat tat HIV-1 and the viral protein Tat modulate the expression of interferon-induced protein with tetratricopeptide repeats 3 (IFIT3; IFIT4) in immature dendritic cells and monocyte-derived macrophages PubMed
tat Microarray analysis indicates HIV-1 Tat upregulates the interferon-responsive gene expression of many proteins, including IFIT4, in immature dendritic cells, an effect that likely facilitates the expansion of HIV-1 infection PubMed
Vif vif HIV-1 Vif downregulates the expression of interferon-induced protein with tetratricopeptide repeats 3 (IFIT3/4) in Vif-expression T cells PubMed
Vpr vpr HIV-1 Vpr upregulates the gene expression of IFIT3 in human monocyte-derived dendritic cells PubMed
Vpu vpu The expression of IFIT3 is enhanced in Vpu-deficient HIV-1-infected cells as compared to that in wild-type-infected cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables molecular_function ND
No biological Data available
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in antiviral innate immune response IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in defense response to virus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of apoptotic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of cell population proliferation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to virus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced protein with tetratricopeptide repeats 3
Names
CIG49
IFI-60K
IFIT-3
IFIT-4
ISG-60
interferon-induced 60 kDa protein
interferon-induced protein with tetratricopeptide repeats 4
retinoic acid-induced gene G protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031683.4 → NP_001026853.1  interferon-induced protein with tetratricopeptide repeats 3 isoform a

    See identical proteins and their annotated locations for NP_001026853.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region compared to variant 1. Variants 1 and 2 both encode isoform a, using different start codons but encoding identical proteins.
    Source sequence(s)
    AL353751, BC001383, BM790031, DB268497
    Consensus CDS
    CCDS31241.1
    UniProtKB/Swiss-Prot
    O14879, Q99634, Q9BSK7
    UniProtKB/TrEMBL
    A0A7P0T855, Q5T765
    Related
    ENSP00000360876.4, ENST00000371811.4
    Conserved Domains (4) summary
    PRK02603
    Location:184 → 341
    PRK02603; photosystem I assembly protein Ycf3; Provisional
    sd00006
    Location:206 → 236
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:51 → 126
    TPR_12; Tetratricopeptide repeat
    pfam14559
    Location:150 → 213
    TPR_19; Tetratricopeptide repeat

  2. NM_001289758.2 → NP_001276687.1  interferon-induced protein with tetratricopeptide repeats 3 isoform b

    See identical proteins and their annotated locations for NP_001276687.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate exon compared to variant 1. The resulting isoform (b) uses a translation initiation site at a downstream AUG that results in an isoform (b) with a shorter N-terminus compared to isoform 1. Variants 3 and 4 both encode the same isoform (b).
    Source sequence(s)
    AL353751, BM790031, DA673951
    Consensus CDS
    CCDS91298.1
    UniProtKB/TrEMBL
    A0A7P0T7D6, A0A7P0T855
    Related
    ENSP00000505695.1, ENST00000681277.1
    Conserved Domains (3) summary
    PRK02603
    Location:132 → 289
    PRK02603; photosystem I assembly protein Ycf3; Provisional
    sd00006
    Location:154 → 184
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1 → 74
    TPR_12; Tetratricopeptide repeat

  3. NM_001289759.2 → NP_001276688.1  interferon-induced protein with tetratricopeptide repeats 3 isoform b

    See identical proteins and their annotated locations for NP_001276688.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and contains an alternate exon compared to variant 1. The resulting isoform (b) uses a translation initiation site at a downstream AUG that results in an isoform (b) with a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AL353751, BM790031, BU509201, DB268497
    Consensus CDS
    CCDS91298.1
    UniProtKB/TrEMBL
    A0A7P0T7D6, A0A7P0T855
    Related
    ENSP00000506557.1, ENST00000680037.1
    Conserved Domains (3) summary
    PRK02603
    Location:132 → 289
    PRK02603; photosystem I assembly protein Ycf3; Provisional
    sd00006
    Location:154 → 184
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1 → 74
    TPR_12; Tetratricopeptide repeat

  4. NM_001549.6 → NP_001540.2  interferon-induced protein with tetratricopeptide repeats 3 isoform a

    See identical proteins and their annotated locations for NP_001540.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform a. Variants 1 and 2 both encode isoform a, using different start codons but encoding identical proteins.
    Source sequence(s)
    AK290427, AL353751, BM790031
    Consensus CDS
    CCDS7402.1
    UniProtKB/Swiss-Prot
    O14879, Q99634, Q9BSK7
    UniProtKB/TrEMBL
    A0A7P0T855, Q5T765
    Related
    ENSP00000360883.4, ENST00000371818.9
    Conserved Domains (4) summary
    PRK02603
    Location:184 → 341
    PRK02603; photosystem I assembly protein Ycf3; Provisional
    sd00006
    Location:206 → 236
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:51 → 126
    TPR_12; Tetratricopeptide repeat
    pfam14559
    Location:150 → 213
    TPR_19; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    89327997..89340968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    90211865..90224839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O14879.1 GenPept UniProtKB/Swiss-Prot:O14879

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