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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_011611.2 → NP_035741.2 tumor necrosis factor receptor superfamily member 5 isoform 1 precursor
See identical proteins and their annotated locations for NP_035741.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AI385482, AL591411, AL591495, BY259264, BY743050
- Consensus CDS
-
CCDS17069.1
- UniProtKB/Swiss-Prot
- P27512, Q3TS33, Q3TSL2, Q3U799, Q3U7C9, Q3UBH3, Q542B1, Q8K2X6, Q99NE0, Q99NE1, Q99NE2, Q99NE3
- Related
- ENSMUSP00000017799.6, ENSMUST00000017799.12
- Conserved Domains (1) summary
-
- cd13407
Location:26 → 186
- TNFRSF5; Tumor necrosis factor receptor superfamily member 5 (TNFRSF5), also known as CD40
-
NM_170702.2 → NP_733803.2 tumor necrosis factor receptor superfamily member 5 isoform 5 precursor
See identical proteins and their annotated locations for NP_733803.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting isoform (5), also known as type V, lacks an internal segment near the C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI385482, AJ401390, AL591411, AL591495
- Consensus CDS
-
CCDS17070.1
- UniProtKB/Swiss-Prot
-
P27512
- Related
- ENSMUSP00000073386.3, ENSMUST00000073707.9
- Conserved Domains (1) summary
-
- cd13407
Location:26 → 186
- TNFRSF5; Tumor necrosis factor receptor superfamily member 5 (TNFRSF5), also known as CD40
-
NM_170703.2 → NP_733804.1 tumor necrosis factor receptor superfamily member 5 isoform 2 precursor
See identical proteins and their annotated locations for NP_733804.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting isoform (2), also known as type II, lacks an internal segment near the C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI385482, AJ401387, AL591411, AL591495
- Consensus CDS
-
CCDS17071.1
- UniProtKB/Swiss-Prot
-
P27512
- Related
- ENSMUSP00000080059.5, ENSMUST00000081310.11
- Conserved Domains (2) summary
-
- cd00185
Location:62 → 103
- TNFRSF; CRD2 [structural motif]
- cl22855
Location:26 → 166
- TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
-
NM_170704.2 → NP_733805.1 tumor necrosis factor receptor superfamily member 5 isoform 4 precursor
See identical proteins and their annotated locations for NP_733805.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in the 3' coding region that results in a frameshift, compared to variant 1. The resulting isoform (4), also known as type IV, has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AI385482, AJ401389, AL591411, AL591495
- UniProtKB/Swiss-Prot
-
P27512
- Related
- ENSMUSP00000139193.2, ENSMUST00000184221.2
- Conserved Domains (1) summary
-
- cd13407
Location:26 → 186
- TNFRSF5; Tumor necrosis factor receptor superfamily member 5 (TNFRSF5), also known as CD40
RNA
-
NR_027852.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) retains an intron, compared to variant 1. This variant is represented as non-coding because it is a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL591411, AL591495
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
164897535..164913574
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006499155.5 → XP_006499218.1 tumor necrosis factor receptor superfamily member 5 isoform X2
- Conserved Domains (2) summary
-
- cd00185
Location:15 → 55
- TNFRSF; CRD4 [structural motif]
- cl22855
Location:1 → 55
- TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
-
XM_006499154.4 → XP_006499217.1 tumor necrosis factor receptor superfamily member 5 isoform X1
- Conserved Domains (1) summary
-
- cd13407
Location:26 → 166
- TNFRSF5; Tumor necrosis factor receptor superfamily member 5 (TNFRSF5), also known as CD40