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POLR1B RNA polymerase I subunit B [ Canis lupus familiaris (dog) ]

Gene ID: 100856298, updated on 8-Mar-2024

Summary

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Official Symbol
POLR1Bprovided by VGNC
Official Full Name
RNA polymerase I subunit Bprovided by VGNC
Primary source
VGNC:VGNC:44789
See related
Ensembl:ENSCAFG00845010775
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (37550047..37575002)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (36543712..36568761)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (36956099..36980996)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (36688159..36713214)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (36742224..36767072)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102154778 Neighboring gene tubulin tyrosine ligase Neighboring gene U6 spliceosomal RNA Neighboring gene 39S ribosomal protein L11, mitochondrial-like Neighboring gene uncharacterized LOC111090612 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 5 Neighboring gene solute carrier family 20 member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    37550047..37575002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038691439.1 → XP_038547367.1  DNA-directed RNA polymerase I subunit RPA2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0R2R9
    Related
    ENSCAFP00845015094.1, ENSCAFT00845019309.1
    Conserved Domains (3) summary
    cd00653
    Location:38 → 1133
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam06883
    Location:563 → 616
    RNA_pol_Rpa2_4; RNA polymerase I, Rpa2 specific domain

  2. XM_038691440.1 → XP_038547368.1  DNA-directed RNA polymerase I subunit RPA2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YWV7, A0A8I3NBT8
    Related
    ENSCAFP00845014925.1, ENSCAFT00845019106.1
    Conserved Domains (2) summary
    cd00653
    Location:38 → 937
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    36688159..36713214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038498899.1 → XP_038354827.1  DNA-directed RNA polymerase I subunit RPA2 isoform X1

    Conserved Domains (3) summary
    cd00653
    Location:38 → 1133
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam06883
    Location:563 → 616
    RNA_pol_Rpa2_4; RNA polymerase I, Rpa2 specific domain

  2. XM_038498900.1 → XP_038354828.1  DNA-directed RNA polymerase I subunit RPA2 isoform X2

    Conserved Domains (2) summary
    cd00653
    Location:38 → 937
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    36742224..36767072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038625523.1 → XP_038481451.1  DNA-directed RNA polymerase I subunit RPA2 isoform X1

  2. XM_038625524.1 → XP_038481452.1  DNA-directed RNA polymerase I subunit RPA2 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    36956099..36980996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038561477.1 → XP_038417405.1  DNA-directed RNA polymerase I subunit RPA2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0R2R9
    Conserved Domains (3) summary
    cd00653
    Location:38 → 1133
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam06883
    Location:563 → 616
    RNA_pol_Rpa2_4; RNA polymerase I, Rpa2 specific domain

  2. XM_038561478.1 → XP_038417406.1  DNA-directed RNA polymerase I subunit RPA2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YWV7, A0A8I3NBT8
    Conserved Domains (2) summary
    cd00653
    Location:38 → 937
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    36543712..36568761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003639600.5 → XP_003639648.2  DNA-directed RNA polymerase I subunit RPA2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0R2R9
    Conserved Domains (3) summary
    cd00653
    Location:38 → 1133
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
    pfam06883
    Location:563 → 616
    RNA_pol_Rpa2_4; RNA polymerase I, Rpa2 specific domain

  2. XM_038453101.1 → XP_038309029.1  DNA-directed RNA polymerase I subunit RPA2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YWV7, A0A8I3NBT8
    Conserved Domains (2) summary
    cd00653
    Location:38 → 937
    RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...
    pfam04561
    Location:186 → 375
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2
Nucleotide Protein
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