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sorbs1 sorbin and SH3 domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 100002756, updated on 27-Mar-2024

Summary

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Gene symbol
sorbs1
Gene description
sorbin and SH3 domain containing 1
See related
Ensembl:ENSDARG00000103435
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
29
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (23132634..23226461)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (23002203..23096010)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108192029 Neighboring gene kinesin family binding protein Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene si:dkey-103j14.5 Neighboring gene uncharacterized LOC110440180 Neighboring gene KH domain containing, RNA binding, signal transduction associated 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The cytoskeleton adaptor protein Sorbs1 controls the development of lymphatic and venous vessels in zebrafish.
    Title: The cytoskeleton adaptor protein Sorbs1 controls the development of lymphatic and venous vessels in zebrafish.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
sorbin and SH3 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    23132634..23226461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480836.1 → XP_021336511.1  sorbin and SH3 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QK79
    Conserved Domains (3) summary
    cd11780
    Location:1011 → 1065
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain
    cl17036
    Location:648 → 703
    SH3; Src Homology 3 domain superfamily

  2. XM_021480841.1 → XP_021336516.1  sorbin and SH3 domain-containing protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8M9QK83
    Conserved Domains (3) summary
    cd11780
    Location:967 → 1021
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain
    cl17036
    Location:648 → 703
    SH3; Src Homology 3 domain superfamily

  3. XM_021480842.1 → XP_021336517.1  sorbin and SH3 domain-containing protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A8M9PYM9
    Conserved Domains (3) summary
    cd11780
    Location:828 → 882
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain
    cl17036
    Location:648 → 703
    SH3; Src Homology 3 domain superfamily

  4. XM_021480843.1 → XP_021336518.1  sorbin and SH3 domain-containing protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A8M9QAB9
    Related
    ENSDARP00000136149.1, ENSDART00000162359.2
    Conserved Domains (3) summary
    cd11780
    Location:784 → 838
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain
    cl17036
    Location:648 → 703
    SH3; Src Homology 3 domain superfamily

  5. XM_021480839.1 → XP_021336514.1  sorbin and SH3 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8M9QFZ8
    Conserved Domains (3) summary
    cd11780
    Location:1007 → 1061
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain
    cl17036
    Location:644 → 699
    SH3; Src Homology 3 domain superfamily

  6. XM_017358967.2 → XP_017214456.1  sorbin and SH3 domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8M6Z2J6

  7. XM_017358968.2 → XP_017214457.1  sorbin and SH3 domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8M6Z435

  8. XM_021480840.1 → XP_021336515.1  sorbin and SH3 domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8M9QNT6
    Conserved Domains (3) summary
    cd11780
    Location:980 → 1034
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain
    cl17036
    Location:617 → 672
    SH3; Src Homology 3 domain superfamily

  9. XM_021480838.1 → XP_021336513.1  sorbin and SH3 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M9QAB7
    Conserved Domains (3) summary
    cd11780
    Location:1010 → 1064
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:246 → 270
    Sorb; Sorbin homologous domain
    cl17036
    Location:647 → 702
    SH3; Src Homology 3 domain superfamily

  10. XM_021480837.1 → XP_021336512.1  sorbin and SH3 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PYM4
    Conserved Domains (3) summary
    cd11780
    Location:1010 → 1064
    SH3_Sorbs_3; Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains
    cl02617
    Location:246 → 270
    Sorb; Sorbin homologous domain
    cl17036
    Location:647 → 702
    SH3; Src Homology 3 domain superfamily

  11. XM_017358969.2 → XP_017214458.1  sorbin and SH3 domain-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A8M6Z9S5

RNA

  1. XR_002459856.1 RNA Sequence

    Related
    ENSDART00000169447.2

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395309.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    304058..373652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474286.1 → XP_021329961.1  sorbin and SH3 domain-containing protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A8M9Q4T7
    Conserved Domains (1) summary
    cl02617
    Location:246 → 270
    Sorb; Sorbin homologous domain

  2. XM_021474284.1 → XP_021329959.1  sorbin and SH3 domain-containing protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A8M9PYH1
    Conserved Domains (1) summary
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain

  3. XM_021474288.1 → XP_021329963.1  sorbin and SH3 domain-containing protein 1 isoform X16

    UniProtKB/TrEMBL
    A0A8M9PSG3
    Conserved Domains (1) summary
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain

  4. XM_021474285.1 → XP_021329960.1  sorbin and SH3 domain-containing protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A8M9Q9G9
    Conserved Domains (1) summary
    cl02617
    Location:246 → 270
    Sorb; Sorbin homologous domain

  5. XM_021474287.1 → XP_021329962.1  sorbin and SH3 domain-containing protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A8M9PFI6
    Conserved Domains (1) summary
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain

  6. XM_021474289.1 → XP_021329964.1  sorbin and SH3 domain-containing protein 1 isoform X17

    UniProtKB/TrEMBL
    A0A8M9PYH6
    Conserved Domains (1) summary
    cl02617
    Location:247 → 271
    Sorb; Sorbin homologous domain

  7. XM_021474292.1 → XP_021329967.1  sorbin and SH3 domain-containing protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A8M9PFJ2
    Conserved Domains (1) summary
    cl02617
    Location:181 → 205
    Sorb; Sorbin homologous domain

  8. XM_021474290.1 → XP_021329965.1  sorbin and SH3 domain-containing protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A8M9Q9H3
    Conserved Domains (1) summary
    cl02617
    Location:182 → 206
    Sorb; Sorbin homologous domain

  9. XM_021474291.1 → XP_021329966.1  sorbin and SH3 domain-containing protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A8M9Q9H3
    Conserved Domains (1) summary
    cl02617
    Location:182 → 206
    Sorb; Sorbin homologous domain
Nucleotide Protein Strain
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