Structure Database (LMSD)

Common Name
Dendrogenin A
Systematic Name
5α-hydroxy-6β-[2-(1H-imidazol-4-yl)-ethylamino]-cholestan-3β-ol
Synonyms
LM ID
LMST05050025
Formula
Exact Mass
Calculate m/z
513.429427
Status
Curated

Classification

Biological Context

Dendrogenin A (DDA) is a selective liver X receptor (LXR) modulator (SLiM), an inhibitor of cholesterol epoxide hydrolase (ChEH; Ki = 120 nM), and an active metabolite of cholesterol.1,2 It is formed from 5,6α-epoxy cholesterol via conjugation with histamine by DDA synthase.2,1,3 DDA is found in non-cancerous human mammary epithelial cells and epithelial melanocytes but not in a variety of breast carcinoma or melanoma cells and only at low levels in isolated human breast tumor tissue.2 It inhibits 22(R)-hydroxy cholesterol-induced activation of LXRβ and LXRα in a reporter assay (IC50s = 76 and 362 nM, respectively) but is also a partial agonist of LXRs, increasing protein levels of Nur77, NOR-1, LC3-I, and LC3-II in B16/F10 murine melanoma cells.4 It is selective for modulation of LXRα and LXRβ over the pregnane X receptor (PXR), aryl hydrocarbon receptor (AhR), vitamin D receptor (VDR), retinoid X receptor γ (RXRγ), retinoic acid receptor α (RARα), peroxisome proliferator-activated receptor α (PPARα), PPARγ, glucocorticoid receptor, androgen receptor, estrogen receptor α (ERα), and ERβ at 2.5 µM. It also increases protein levels of LC3-II in B16/F10 and SK-MEL-28 cancer cells when used at concentrations of 2.5 and 5 µM and induces autophagic cell death in the same cell types at 2.5 µM. DDA (0.37 µg/kg) reduces tumor growth in a B16/F10 murine model of melanoma and a TS/A murine mammary cancer model and induces cancer cell differentiation in vitro and in vivo.2

This information has been provided by Cayman Chemical

References

3. Soulès, R., Audouard-Combe, F., Huc-Claustre, E., et al. A fast UPLC-HILIC method for an accurate quantification of dendrogenin A in human tissues. J. Steroid Biochem. Mol. Biol. 194, 105447 (2019).
4. Segala, G., David, M., de Medina, P., et al. Dendrogenin A drives LXR to trigger lethal autophagy in cancers. Nat. Commun. 8(1), 1903 (2017).

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Mus musculus (#10090)
Mammalia (#40674)
Dendrogenin A arises from cholesterol and histamine metabolism and shows cell differentiation and anti-tumour properties.,
Nat Commun, 2013
Pubmed ID: 23673625

String Representations

InChiKey (Click to copy)
AVFNYTPENXWWCA-BULFVYHESA-N
InChi (Click to copy)
InChI=1S/C32H55N3O2/c1-21(2)7-6-8-22(3)26-9-10-27-25-17-29(34-16-13-23-19-33-20-35-23)32(37)18-24(36)11-15-31(32,5)28(25)12-14-30(26,27)4/h19-22,24-29,34,36-37H,6-18H2,1-5H3,(H,33,35)/t22-,24+,25+,26-,27+,28+,29-,30-,31-,32+/m1/s1
SMILES (Click to copy)
[C@]12(C[C@@H](NCCC3=CN=CN3)[C@@]3(O)C[C@@H](O)CC[C@]3(C)[C@@]1([H])CC[C@]1(C)[C@@]([H])([C@@](C)([H])CCCC(C)C)CC[C@@]21[H])[H]

Other Databases

PubChem CID
Cayman ID

Calculated Physicochemical Properties

Heavy Atoms 37
Rings 5
Aromatic Rings 1
Rotatable Bonds 9
Van der Waals Molecular Volume 534.76
Topological Polar Surface Area 81.17
Hydrogen Bond Donors 4
Hydrogen Bond Acceptors 5
logP 7.10
Molar Refractivity 151.96

Admin

Created at
-
Updated at
4th Feb 2021