Structure Database (LMSD)

Common Name
Dendrogenin A
Systematic Name
5α-hydroxy-6β-[2-(1H-imidazol-4-yl)-ethylamino]-cholestan-3β-ol
Synonyms
LM ID
LMST05050025
Formula
Exact Mass
Calculate m/z
513.429427
Status
Curated

Classification

Biological Context

Dendrogenin A (DDA) is a selective liver X receptor (LXR) modulator (SLiM), an inhibitor of cholesterol epoxide hydrolase (ChEH; Ki = 120 nM), and an active metabolite of cholesterol.1,2 It is formed from 5,6α-epoxy cholesterol via conjugation with histamine by DDA synthase.2,1,3 DDA is found in non-cancerous human mammary epithelial cells and epithelial melanocytes but not in a variety of breast carcinoma or melanoma cells and only at low levels in isolated human breast tumor tissue.2 It inhibits 22(R)-hydroxy cholesterol-induced activation of LXRβ and LXRα in a reporter assay (IC50s = 76 and 362 nM, respectively) but is also a partial agonist of LXRs, increasing protein levels of Nur77, NOR-1, LC3-I, and LC3-II in B16/F10 murine melanoma cells.4 It is selective for modulation of LXRα and LXRβ over the pregnane X receptor (PXR), aryl hydrocarbon receptor (AhR), vitamin D receptor (VDR), retinoid X receptor γ (RXRγ), retinoic acid receptor α (RARα), peroxisome proliferator-activated receptor α (PPARα), PPARγ, glucocorticoid receptor, androgen receptor, estrogen receptor α (ERα), and ERβ at 2.5 µM. It also increases protein levels of LC3-II in B16/F10 and SK-MEL-28 cancer cells when used at concentrations of 2.5 and 5 µM and induces autophagic cell death in the same cell types at 2.5 µM. DDA (0.37 µg/kg) reduces tumor growth in a B16/F10 murine model of melanoma and a TS/A murine mammary cancer model and induces cancer cell differentiation in vitro and in vivo.2

This information has been provided by Cayman Chemical

References

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Mus musculus (#10090)
Mammalia (#40674)
Dendrogenin A arises from cholesterol and histamine metabolism and shows cell differentiation and anti-tumour properties.,
Nat Commun, 2013
Pubmed ID: 23673625

String Representations

InChiKey (Click to copy)
AVFNYTPENXWWCA-BULFVYHESA-N
InChi (Click to copy)
InChI=1S/C32H55N3O2/c1-21(2)7-6-8-22(3)26-9-10-27-25-17-29(34-16-13-23-19-33-20-35-23)32(37)18-24(36)11-15-31(32,5)28(25)12-14-30(26,27)4/h19-22,24-29,34,36-37H,6-18H2,1-5H3,(H,33,35)/t22-,24+,25+,26-,27+,28+,29-,30-,31-,32+/m1/s1
SMILES (Click to copy)
[C@]12(C[C@@H](NCCC3=CN=CN3)[C@@]3(O)C[C@@H](O)CC[C@]3(C)[C@@]1([H])CC[C@]1(C)[C@@]([H])([C@@](C)([H])CCCC(C)C)CC[C@@]21[H])[H]

Other Databases

PubChem CID
Cayman ID

Calculated Physicochemical Properties

Heavy Atoms 37
Rings 5
Aromatic Rings 1
Rotatable Bonds 9
Van der Waals Molecular Volume 534.76
Topological Polar Surface Area 81.17
Hydrogen Bond Donors 4
Hydrogen Bond Acceptors 5
logP 7.10
Molar Refractivity 151.96

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Created at
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Updated at
4th Feb 2021