Hmdb loader
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-05-09 20:57:35 UTC
Update Date2022-03-07 03:17:39 UTC
HMDB IDHMDB0060138
Secondary Accession Numbers
  • HMDB60138
Metabolite Identification
Common Name5beta-Cholestane-3alpha,7alpha,27-triol
Description5beta-Cholestane-3alpha,7alpha,27-triol, also known as 5β-cholestane-3α,7α,27-triol, belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core. 5beta-Cholestane-3alpha,7alpha,27-triol is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563866019
Synonyms
ValueSource
5b-Cholestane-3a,7a,27-triolGenerator
5Β-cholestane-3α,7α,27-triolGenerator
Chemical FormulaC27H48O3
Average Molecular Weight420.6682
Monoisotopic Molecular Weight420.360345402
IUPAC Name(1R,2R,5S,7R,9S,10S,11R,14R,15R)-14-[(2R)-6-hydroxy-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,9-diol
Traditional Name(1R,2R,5S,7R,9S,10S,11R,14R,15R)-14-[(2R)-6-hydroxy-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,9-diol
CAS Registry NumberNot Available
SMILES
C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@]12C
InChI Identifier
InChI=1S/C27H48O3/c1-17(7-6-12-25(2,3)30)20-8-9-21-24-22(11-14-27(20,21)5)26(4)13-10-19(28)15-18(26)16-23(24)29/h17-24,28-30H,6-16H2,1-5H3/t17-,18-,19+,20-,21-,22-,23+,24-,26-,27-/m1/s1
InChI KeyUROPIWALBBMYRP-GWEYAUKASA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassCholestane steroids
Direct ParentCholesterols and derivatives
Alternative Parents
Substituents
  • Cholesterol
  • Cholesterol-skeleton
  • 25-hydroxysteroid
  • 3-hydroxysteroid
  • 7-hydroxysteroid
  • Hydroxysteroid
  • 3-beta-hydroxysteroid
  • 7-alpha-hydroxysteroid
  • Cyclic alcohol
  • Tertiary alcohol
  • Secondary alcohol
  • Alcohol
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.002 g/LALOGPS
logP4.83ALOGPS
logP4.74ChemAxon
logS-5.3ALOGPS
pKa (Strongest Acidic)18.3ChemAxon
pKa (Strongest Basic)-0.46ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area60.69 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity123.2 m³·mol⁻¹ChemAxon
Polarizability51.6 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+199.31531661259
DarkChem[M-H]-191.74831661259
DeepCCS[M-2H]-234.35230932474
DeepCCS[M+Na]+208.54130932474
AllCCS[M+H]+209.232859911
AllCCS[M+H-H2O]+207.332859911
AllCCS[M+NH4]+211.032859911
AllCCS[M+Na]+211.532859911
AllCCS[M-H]-204.832859911
AllCCS[M+Na-2H]-207.032859911
AllCCS[M+HCOO]-209.532859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
5beta-Cholestane-3alpha,7alpha,27-triolC[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@]12C2632.0Standard polar33892256
5beta-Cholestane-3alpha,7alpha,27-triolC[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@]12C3396.3Standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triolC[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@]12C3547.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
5beta-Cholestane-3alpha,7alpha,27-triol,1TMS,isomer #1C[C@H](CCCC(C)(C)O[Si](C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@@]21C3480.2Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,1TMS,isomer #2C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@@]21C3335.1Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,1TMS,isomer #3C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O[Si](C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C3412.9Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,2TMS,isomer #1C[C@H](CCCC(C)(C)O[Si](C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@@]21C3423.9Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,2TMS,isomer #2C[C@H](CCCC(C)(C)O[Si](C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O[Si](C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C3520.4Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,2TMS,isomer #3C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C)C[C@H]4C[C@@H](O[Si](C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C3277.7Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,3TMS,isomer #1C[C@H](CCCC(C)(C)O[Si](C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C)C[C@H]4C[C@@H](O[Si](C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C3413.5Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,1TBDMS,isomer #1C[C@H](CCCC(C)(C)O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@@]21C3732.6Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,1TBDMS,isomer #2C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C(C)(C)C)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@@]21C3568.9Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,1TBDMS,isomer #3C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C3637.0Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,2TBDMS,isomer #1C[C@H](CCCC(C)(C)O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C(C)(C)C)C[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@@]21C3872.4Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,2TBDMS,isomer #2C[C@H](CCCC(C)(C)O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O)C[C@H]4C[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C4000.6Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,2TBDMS,isomer #3C[C@H](CCCC(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C(C)(C)C)C[C@H]4C[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C3733.5Semi standard non polar33892256
5beta-Cholestane-3alpha,7alpha,27-triol,3TBDMS,isomer #1C[C@H](CCCC(C)(C)O[Si](C)(C)C(C)(C)C)[C@H]1CC[C@@H]2[C@H]3[C@@H](O[Si](C)(C)C(C)(C)C)C[C@H]4C[C@@H](O[Si](C)(C)C(C)(C)C)CC[C@@]4(C)[C@@H]3CC[C@@]21C4113.4Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4i-2239400000-941c1c87e273b8d684d82017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol GC-MS (3 TMS) - 70eV, Positivesplash10-00di-2210149000-838e74bb6e40f6dd537f2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol 10V, Positive-QTOFsplash10-0f79-0009800000-8e6af25885075384fe012017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol 20V, Positive-QTOFsplash10-0f79-1009300000-f037f665c4735a16595b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol 40V, Positive-QTOFsplash10-062l-1129000000-b2bbcb6a47a3898c36cc2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol 10V, Negative-QTOFsplash10-014i-0001900000-39046a5964336caefa312017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol 20V, Negative-QTOFsplash10-0uxr-0002900000-c52dda6051491fb520792017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5beta-Cholestane-3alpha,7alpha,27-triol 40V, Negative-QTOFsplash10-0fe0-1009200000-6d261b88b2ce3844e5602017-10-06Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131769843
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bolling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novere N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BO: A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3. [PubMed:23455439 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Dietschy JM, Turley SD: Thematic review series: brain Lipids. Cholesterol metabolism in the central nervous system during early development and in the mature animal. J Lipid Res. 2004 Aug;45(8):1375-97. [PubMed:15254070 ]
  7. O'Byrne SM, Blaner WS: Retinol and retinyl esters: biochemistry and physiology. J Lipid Res. 2013 Jul;54(7):1731-43. doi: 10.1194/jlr.R037648. Epub 2013 Apr 26. [PubMed:23625372 ]
  8. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
  9. Linda T. Welson (2006). Triglycerides and Cholesterol Research. Nova Science Publishers Inc..