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Showing metabocard for 2-Keto-6-aminocaproate (HMDB0012151)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2009-04-06 16:20:04 UTC
Update Date2023-02-21 17:17:40 UTC
HMDB IDHMDB0012151
Secondary Accession Numbers
  • HMDB12151
Metabolite Identification
Common Name2-Keto-6-aminocaproate
Description2-Keto-6-aminocaproate is an intermediate in lysine degradation and can be formed from L-lysine. L-Lysine is an essential amino-acid that is a necessary building block for all protein in the body. L-Lysine plays a major role in calcium absorption; building muscle protein; recovering from surgery or sports injuries; and the body's production of hormones, enzymes, and antibodies. L-Lysine can be converted to 2-keto-6-aminocaproate via the enzyme L-lysine alpha-oxidase. 2-Keto-6-aminocaproate can spontaneously decarboxylate to 5-aminovalerate in the presence of the reaction product, hydrogen peroxide. It can also be spontaneously converted in solution to its cyclic form delta-piperideine-2-carboxylate. This has been demonstrated in vitro in the presence of catalase, which splits hydrogen peroxide.
Structure
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MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0012151 (2-Keto-6-aminocaproate)

  Mrv0541 02241203472D          

 10  9  0  0  0  0            999 V2000
   11.2296  -10.8030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5151  -10.3906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9441  -10.3904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8007  -10.8032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6585  -10.8028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3727  -10.3907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0862  -10.3907    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.6585  -11.6279    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.0872  -10.8032    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3727   -9.5657    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  2  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  7  1  0  0  0  0
  5  8  2  0  0  0  0
  5  6  1  0  0  0  0
  6  9  1  0  0  0  0
  6 10  2  0  0  0  0
M  END
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3D MOL for HMDB0012151 (2-Keto-6-aminocaproate)

HMDB0012151
     RDKit          3D
2-Keto-6-aminocaproate
 21 20  0  0  0  0  0  0  0  0999 V2000
    3.6242    0.5284    0.7765 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3725    0.7189    0.1166 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3476   -0.3429    0.4518 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0674   -0.0389   -0.2986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0004   -1.0683   -0.0049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2000   -0.6856   -0.7764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2233   -0.9004   -2.0058 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3360   -0.0752   -0.1508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3610    0.1643    1.0954 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4639    0.2850   -0.8712 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7750    1.1602    1.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4267    0.5477    0.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5227    0.8233   -0.9683 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9599    1.7064    0.4693 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775   -1.3123    0.1008 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2030   -0.4339    1.5314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3101    0.9536    0.0429 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2855   -0.0059   -1.3752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6709   -2.0872   -0.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2641   -1.0395    1.0727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5324    1.1025   -1.4249 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  2  0
  8 10  1  0
  1 11  1  0
  1 12  1  0
  2 13  1  0
  2 14  1  0
  3 15  1  0
  3 16  1  0
  4 17  1  0
  4 18  1  0
  5 19  1  0
  5 20  1  0
 10 21  1  0
M  END
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3D SDF for HMDB0012151 (2-Keto-6-aminocaproate)

  Mrv0541 02241203472D          

 10  9  0  0  0  0            999 V2000
   11.2296  -10.8030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5151  -10.3906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9441  -10.3904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8007  -10.8032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6585  -10.8028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3727  -10.3907    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0862  -10.3907    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   12.6585  -11.6279    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.0872  -10.8032    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3727   -9.5657    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  3  1  0  0  0  0
  2  4  1  0  0  0  0
  3  5  1  0  0  0  0
  4  7  1  0  0  0  0
  5  8  2  0  0  0  0
  5  6  1  0  0  0  0
  6  9  1  0  0  0  0
  6 10  2  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0012151

> <DATABASE_NAME>
hmdb

> <SMILES>
NCCCCC(=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C6H11NO3/c7-4-2-1-3-5(8)6(9)10/h1-4,7H2,(H,9,10)

> <INCHI_KEY>
GWENQMVPLJAMAE-UHFFFAOYSA-N

> <FORMULA>
C6H11NO3

> <MOLECULAR_WEIGHT>
145.1564

> <EXACT_MASS>
145.073893223

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
14.618438282127595

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-amino-2-oxohexanoic acid

> <ALOGPS_LOGP>
-2.26

> <JCHEM_LOGP>
-2.151053014118317

> <ALOGPS_LOGS>
-0.93

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.2413405203245573

> <JCHEM_PKA_STRONGEST_BASIC>
10.005116205021158

> <JCHEM_POLAR_SURFACE_AREA>
80.39000000000001

> <JCHEM_REFRACTIVITY>
35.4048

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.71e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-amino-2-oxohexanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0012151 (2-Keto-6-aminocaproate)

HMDB0012151
     RDKit          3D
2-Keto-6-aminocaproate
 21 20  0  0  0  0  0  0  0  0999 V2000
    3.6242    0.5284    0.7765 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3725    0.7189    0.1166 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3476   -0.3429    0.4518 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0674   -0.0389   -0.2986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0004   -1.0683   -0.0049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2000   -0.6856   -0.7764 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2233   -0.9004   -2.0058 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3360   -0.0752   -0.1508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3610    0.1643    1.0954 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4639    0.2850   -0.8712 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7750    1.1602    1.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4267    0.5477    0.1053 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5227    0.8233   -0.9683 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9599    1.7064    0.4693 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775   -1.3123    0.1008 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2030   -0.4339    1.5314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3101    0.9536    0.0429 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2855   -0.0059   -1.3752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6709   -2.0872   -0.2772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2641   -1.0395    1.0727 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5324    1.1025   -1.4249 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  2  0
  8 10  1  0
  1 11  1  0
  1 12  1  0
  2 13  1  0
  2 14  1  0
  3 15  1  0
  3 16  1  0
  4 17  1  0
  4 18  1  0
  5 19  1  0
  5 20  1  0
 10 21  1  0
M  END
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PDB for HMDB0012151 (2-Keto-6-aminocaproate)

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      20.962 -20.166   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      19.628 -19.396   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      22.296 -19.395   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      18.295 -20.166   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      23.629 -20.165   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      24.962 -19.396   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0      16.961 -19.396   0.000  0.00  0.00           N+0
HETATM    8  O   UNK     0      23.629 -21.705   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      26.296 -20.166   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      24.962 -17.856   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    5                                                       
CONECT    4    2    7                                                       
CONECT    5    3    8    6                                                  
CONECT    6    5    9   10                                                  
CONECT    7    4                                                            
CONECT    8    5                                                            
CONECT    9    6                                                            
CONECT   10    6                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   18    0
END
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3D PDB for HMDB0012151 (2-Keto-6-aminocaproate)

COMPND    HMDB0012151
HETATM    1  N1  UNL     1       3.624   0.528   0.776  1.00  0.00           N  
HETATM    2  C1  UNL     1       2.373   0.719   0.117  1.00  0.00           C  
HETATM    3  C2  UNL     1       1.348  -0.343   0.452  1.00  0.00           C  
HETATM    4  C3  UNL     1       0.067  -0.039  -0.299  1.00  0.00           C  
HETATM    5  C4  UNL     1      -1.000  -1.068  -0.005  1.00  0.00           C  
HETATM    6  C5  UNL     1      -2.200  -0.686  -0.776  1.00  0.00           C  
HETATM    7  O1  UNL     1      -2.223  -0.900  -2.006  1.00  0.00           O  
HETATM    8  C6  UNL     1      -3.336  -0.075  -0.151  1.00  0.00           C  
HETATM    9  O2  UNL     1      -3.361   0.164   1.095  1.00  0.00           O  
HETATM   10  O3  UNL     1      -4.464   0.285  -0.871  1.00  0.00           O  
HETATM   11  H1  UNL     1       3.775   1.160   1.588  1.00  0.00           H  
HETATM   12  H2  UNL     1       4.427   0.548   0.105  1.00  0.00           H  
HETATM   13  H3  UNL     1       2.523   0.823  -0.968  1.00  0.00           H  
HETATM   14  H4  UNL     1       1.960   1.706   0.469  1.00  0.00           H  
HETATM   15  H5  UNL     1       1.777  -1.312   0.101  1.00  0.00           H  
HETATM   16  H6  UNL     1       1.203  -0.434   1.531  1.00  0.00           H  
HETATM   17  H7  UNL     1      -0.310   0.954   0.043  1.00  0.00           H  
HETATM   18  H8  UNL     1       0.285  -0.006  -1.375  1.00  0.00           H  
HETATM   19  H9  UNL     1      -0.671  -2.087  -0.277  1.00  0.00           H  
HETATM   20  H10 UNL     1      -1.264  -1.039   1.073  1.00  0.00           H  
HETATM   21  H11 UNL     1      -4.532   1.103  -1.425  1.00  0.00           H  
CONECT    1    2   11   12
CONECT    2    3   13   14
CONECT    3    4   15   16
CONECT    4    5   17   18
CONECT    5    6   19   20
CONECT    6    7    7    8
CONECT    8    9    9   10
CONECT   10   21
END
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SMILES for HMDB0012151 (2-Keto-6-aminocaproate)

NCCCCC(=O)C(O)=O
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INCHI for HMDB0012151 (2-Keto-6-aminocaproate)

InChI=1S/C6H11NO3/c7-4-2-1-3-5(8)6(9)10/h1-4,7H2,(H,9,10)
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View in JSmolView NMR AssignmentsView Stereo Labels
Synonyms
ValueSource
2-oxo-6-AminocaproateChEBI
6-Amino-2-oxohexanoateChEBI
2-oxo-6-Aminocaproic acidGenerator
6-Amino-2-oxohexanoic acidGenerator
2-Keto-6-aminocaproic acidGenerator
2-keto-6-amino-CaproateHMDB
2-keto-6-amino-Caproic acidHMDB
2-oxo-6-AminohexanoateHMDB
2-oxo-6-Aminohexanoic acidHMDB
alpha-keto-epsilon-AminocaproateHMDB
alpha-keto-epsilon-Aminocaproic acidHMDB
alpha-keto-epsilon-AminohexanoateHMDB
alpha-keto-epsilon-Aminohexanoic acidHMDB
alpha-KetolysineHMDB
Chemical FormulaC6H11NO3
Average Molecular Weight145.1564
Monoisotopic Molecular Weight145.073893223
IUPAC Name6-amino-2-oxohexanoic acid
Traditional Name6-amino-2-oxohexanoic acid
CAS Registry NumberNot Available
SMILES
NCCCCC(=O)C(O)=O
InChI Identifier
InChI=1S/C6H11NO3/c7-4-2-1-3-5(8)6(9)10/h1-4,7H2,(H,9,10)
InChI KeyGWENQMVPLJAMAE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain keto acids and derivatives. These are keto acids with a 6 to 12 carbon atoms long side chain.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassKeto acids and derivatives
Sub ClassMedium-chain keto acids and derivatives
Direct ParentMedium-chain keto acids and derivatives
Alternative Parents
Substituents
  • Medium-chain keto acid
  • Amino fatty acid
  • Alpha-keto acid
  • Fatty acyl
  • Alpha-hydroxy ketone
  • Amino acid
  • Amino acid or derivatives
  • Ketone
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Primary aliphatic amine
  • Organic oxygen compound
  • Organopnictogen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Organic oxide
  • Amine
  • Primary amine
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Source
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB028808
KNApSAcK IDNot Available
Chemspider ID388981
KEGG Compound IDC03239
BioCyc ID2-KETO-6-AMINO-CAPROATE
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound439954
PDB IDNot Available
ChEBI ID17534
Food Biomarker OntologyNot Available
VMH ID6A2OHXNT
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available