Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRPF40A ENSPTRG00000012543

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Description

pre-mRNA processing factor 40 homolog A [Source:VGNC Symbol;Acc:VGNC:2790]

Location

Chromosome 2B: 42,482,147-42,546,067 reverse strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 3 transcripts (splice variants), 207 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000047111.5	PRPF40A-203	2793	930aa	ENSPTRP00000040608.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XLD7 H2R0E8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000081805.1	PRPF40A-202	2763	920aa	ENSPTRP00000079632.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SRT3	-
ENSPTRT00000083302.1	PRPF40A-201	2427	808aa	ENSPTRP00000089776.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TKL9	-

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Summary

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