Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ARFGAP1 ENSBTAG00000004916

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Description

ADP ribosylation factor GTPase activating protein 1 [Source:VGNC Symbol;Acc:VGNC:56176]

Location

Primary_assembly 13: 54,287,348-54,297,735 reverse strand.

ARS-UCD1.3:CM008180.2

About this gene

This gene has 7 transcripts (splice variants), 198 orthologues and 24 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000006468.7	ARFGAP1-201	1677	425aa	ENSBTAP00000006468.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MI54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000105674.1	ARFGAP1-205	1625	372aa	ENSBTAP00000102029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000056498.2	ARFGAP1-202	1617	405aa	ENSBTAP00000052344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08DK2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000081378.2	ARFGAP1-203	1587	395aa	ENSBTAP00000069541.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M712	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000101388.1	ARFGAP1-204	1545	381aa	ENSBTAP00000091174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000077464.2	ARFGAP1-207	1332	406aa	ENSBTAP00000069413.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M6N3	-
ENSBTAT00000115016.1	ARFGAP1-206	1112	304aa	ENSBTAP00000098492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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