Published June 18, 2020 | Version 1.25
Software Open

edamontology/edamontology: EDAM 1.25

  • 1. University of Bergen
  • 2. Institut Pasteur
  • 3. @BiGCAT-UM
  • 4. University of Freiburg

Description

See the changelog-detailed.md for a detailed list of semantic changes in the EDAM ontology.

  • Addition of new concepts, and other improvements (synonyms, hierarchy) for human copy number variation analysis.
  • Addition of new format concepts in support of GigaScience database, GigaDB.
  • Addition of misc. new concepts requested via the tracker
  • Dozens of new synonyms in the EDAM Topic subontology mostly.
  • Clean-up of Expression analysis including undeprecation of Gene expression profiling (now child of Expression analysis), clean-up of synonyms, hiearchy improvements etc. clarifying the concepts.
  • Addition of links to Wikipedia
Changes in hierarchy
  • 52 concepts added (5 Topic, 9 Operation, 0 Data, 38 Format)
  • 7 concept relations changed (0 Topic, 6 Operation, 0 Data, 1 Format, 1 undeprecated)
  • 0 concepts deprecated
Fixed issues
  • 30 "concept or term request" issues fixed and closed (see milestone 1.25)
  • 2 enhacements (#525, #527)
  • 1 bug fixed (#524)

Files

edamontology/edamontology-1.25.zip

Files (13.1 MB)

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Additional details