made by pyLODE 2.13.2

The SPHN RDF Schema

Metadata

URI
https://biomedit.ch/rdf/sphn-schema/sphn
Version URI
https://biomedit.ch/rdf/sphn-schema/sphn/2024/2
Prior Version
https://biomedit.ch/rdf/sphn-schema/sphn/2024/1
Imports
http://purl.obolibrary.org/obo/eco/releases/2023-09-03/eco.owl
http://purl.obolibrary.org/obo/genepio/releases/2023-08-19/genepio.owl
http://purl.obolibrary.org/obo/geno/releases/2023-10-08/geno.owl
http://purl.obolibrary.org/obo/obi/2023-09-20/obi.owl
http://purl.obolibrary.org/obo/so/2021-11-22/so.owl
http://snomed.info/sct/900000000000207008/version/20231201
http://www.ebi.ac.uk/efo/releases/v3.61.0/efo.owl
https://www.orphadata.com/data/ontologies/ordo/last_version/ORDO_en_4.4.owl
https://biomedit.ch/rdf/sphn-resource/atc/2024/1
https://biomedit.ch/rdf/sphn-resource/chop/2024/4
https://biomedit.ch/rdf/sphn-resource/edam/1.25
https://biomedit.ch/rdf/sphn-resource/emdn/2021-09-29/1
https://biomedit.ch/rdf/sphn-resource/hgnc/20231215
https://biomedit.ch/rdf/sphn-resource/icd-10-gm/2024/3
https://biomedit.ch/rdf/sphn-resource/loinc/2.76/1
https://biomedit.ch/rdf/sphn-resource/ucum/2024/1
License
https://creativecommons.org/licenses/by/4.0/
SPHN RDF Schema
RDF (turtle)
External Terminologies in RDF
BioMedIT Portal (with Switch edu-ID)

Description

The SPHN RDF Schema describing concepts defined in the official SPHN Dataset

Table of Contents

  1. Schema Explorer
  2. Classes
  3. Deprecated Classes
  4. Valuesets
  5. Object Properties
  6. Datatype Properties
  7. Annotation Properties
  8. Named Individuals
  9. Namespaces
  10. Legend

Schema Explorer

SchemaScope

URI https://schemascope.dcc.sib.swiss/
Description

Interactive tool to inspect the RDF Schema and its properties. Please note that not all details are included, consult pyLODE for full details of individual concepts.

Preview

Classes

Access Device c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevice
Description

product intended for medical use to gain access to the body, such as cannula, tube, catheter or drainage

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 105789008 | Cannula/tube/catheter, device (physical object) |c
Parents
Medical Devicec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has product codeop
0 .. 1 Terminologyc or Codec
has type codeop
0 .. 1 Yes
has softwareop
0 .. * Softwarec
Restrictions
has type codeop : descendants of the given classes are allowed

SNOMED 105789008 | Cannula/tube/catheter, device (physical object) |c

Used in
(In the range of)
has medical deviceop

Access Device Presence c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AccessDevicePresence
Description

application of medical access device, such as cannula, tube, catheter or drainage

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has end datetimedp
0 .. 1 xsd:dateTimec
has resting pointop
0 .. 1 Body Sitec
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has insertion pointop
0 .. 1 Body Sitec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
1 .. 1 Access Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Administrative Case c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeCase
Description

administrative artifact for billing according to national healthcare billing guidelines, e.g. Swiss Diagnosis Related Groups, and local settings

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has discharge locationop
0 .. 1 Locationc
has discharge datetimedp
0 .. 1 xsd:dateTimec
has identifierdp
0 .. 1 xsd:stringc
has origin locationop
0 .. 1 Locationc
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has care handlingop
0 .. 1 Care Handlingc
has admission datetimedp
1 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None
Used in
(In the range of)
has administrative caseop

Administrative Sex c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdministrativeSex
Description

the sex of the individual used for administrative purposes

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 248152002 | Female (finding) |c SNOMED 248153007 | Male (finding) |c SNOMED 32570681000036106 | Indeterminate sex (finding) |c

Adverse Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent
Description

results from an intervention that caused unintentional harm

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 281647001 | Adverse reaction (disorder) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has onset datetimedp
0 .. 1 xsd:dateTimec
has outcomeop
0 .. 1 Adverse Event outcomec
has interventiondp
0 .. 1 xsd:stringc
has codeop
1 .. 1 Codec
has severity codeop
0 .. 1 Codec or Terminologyc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has consequencesop
0 .. 1 Adverse Event consequencesc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None
Notes

sphn:hasSeverityCode allowed coding system: CTCAE or other

sphn:hasCode allowed coding system: MedDRA

Age c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Age
Description

time elapsed since birth of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 397669002 | Age (qualifier value) |c
LOINC 30525-0 | Age |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has determination datetimedp
1 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
1 .. 1 Yes
has source systemop
1 .. * Source Systemc
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:minc ucum:hc ucum:dc ucum:wkc ucum:moc ucum:ac

Used in
(In the range of)
has subject ageop

Allergen c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Allergen
Description

any substance, product or physical force producing immediate hypersensitivity

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. * Yes
Restrictions
has codeop : descendants of the given classes are allowed

Codec SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c sphn-atc:ATCc

Notes

sphn:hasCode allowed coding system: SNOMED CT, ATC, GTIN

Used in
(In the range of)
has allergenop

Allergy c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Allergy
Description

risk of harmful or undesirable, physiological response which is unique to an individual and associated with exposure to an allergen

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has first record datetimedp
0 .. 1 xsd:dateTimec
has allergenop
0 .. 1 Allergenc
has severity codeop
0 .. 1 Yes
has last reaction datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has reaction type codeop
0 .. 1 Yes
has verification status codeop
0 .. 1 Yes
Restrictions
has severity codeop : descendants of the given classes are not allowed

SNOMED 723505004 | Low risk (qualifier value) |c SNOMED 723509005 | High risk (qualifier value) |c SNOMED 723507007 | Unable to determine risk (qualifier value) |c

has reaction type codeop : descendants of the given classes are not allowed

SNOMED 609328004 | Allergic disposition (finding) |c SNOMED 782197009 | Intolerance to substance (finding) |c

has verification status codeop : descendants of the given classes are not allowed

SNOMED 410605003 | Confirmed present (qualifier value) |c SNOMED 415684004 | Suspected (qualifier value) |c SNOMED 723511001 | Refuted (qualifier value) |c SNOMED 723510000 | Entered in error (qualifier value) |c

Allergy Episode c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AllergyEpisode
Description

manifestation of an allergic reaction following an exposure to an allergen

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has durationop
0 .. 1 Quantityc
has exposureop
0 .. 1 Exposurec
has manifestation codeop
0 .. 1 Yes
has allergenop
1 .. 1 Allergenc
has certainty codeop
0 .. 1 Yes
has severity codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
Restrictions
has manifestation codeop : descendants of the given classes are allowed

SNOMED 404684003 | Clinical finding (finding) |c

has certainty codeop : descendants of the given classes are not allowed

SNOMED 415684004 | Suspected (qualifier value) |c SNOMED 410592001 | Probably present (qualifier value) |c SNOMED 410605003 | Confirmed present (qualifier value) |c

has severity codeop : descendants of the given classes are not allowed

SNOMED 255604002 | Mild (qualifier value) |c SNOMED 6736007 | Moderate (severity modifier) (qualifier value) |c SNOMED 24484000 | Severe (severity modifier) (qualifier value) |c

Notes

For sphn:hasExposure, instances of sphn:TobaccoExposure are not allowed

Antimicrobial Susceptibility Lab Test c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTest
Description

specific lab test performed on an isolate against a chemical agent for determining antimicrobial susceptibility

Schema representation
Parents
Lab Testc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has resultop
1 .. * Antimicrobial Susceptibility Resultc
has instrumentop
0 .. 1 Lab Analyzerc
has codeop
1 .. 1 Yes
has test kitop
0 .. 1 Lab Analyzerc
has chemical agentop
1 .. 1 Substancec or Drugc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 14788002 | Antimicrobial susceptibility test (procedure) |c

Used in
(In the range of)
has lab testop

Antimicrobial Susceptibility Lab Test Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityLabTestEvent
Description

occurrence in which one or multiple laboratory tests are performed on an isolate at a given time for determining antimicrobial susceptibility

Schema representation
Parents
Lab Test Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has sampleop
1 .. 1 Isolatec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has report datetimedp
0 .. 1 xsd:dateTimec
has lab testop
1 .. * Antimicrobial Susceptibility Lab Testc
Restrictions None

Antimicrobial Susceptibility Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AntimicrobialSusceptibilityResult
Description

result of a antimicrobial susceptibility lab analysis

Schema representation
Parents
Lab Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quantityop
0 .. 1 Quantityc
has numerical referenceop
0 .. 1 Reference Rangec or Reference Valuec
has codeop
0 .. 1 Yes
has string valuedp
0 .. 1 xsd:stringc
has standard guidelinedp
0 .. 1 xsd:stringc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 131196009 | Susceptible (qualifier value) |c SNOMED 1255965005 | Susceptible with increased exposure (qualifier value) |c SNOMED 30714006 | Resistant (qualifier value) |c

Used in
(In the range of)
has resultop

Assay c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Assay
Description

a process with the objective to produce information about a sample by examining it

Schema representation
Meaning binding
(Equivalent-classes)
obi:OBI_0000070c
Parents
SPHN Conceptc
Children
(Sub-classes)
Sequencing Assayc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has sampleop
0 .. * Samplec
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has identifierdp
0 .. 1 xsd:stringc
has codeop
1 .. 1 Yes
has administrative caseop
0 .. * Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has data providerop
1 .. 1 Data Providerc
has data fileop
0 .. * Data Filec
has predecessorop
0 .. * Sample Processingc
Restrictions
has codeop : descendants of the given classes are allowed

obi:OBI_0000070c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: EFO, OBI or other

Used in
(In the range of)
has predecessorop

Assessment c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Assessment
Description

assessment scale, classification, staging or scoring system

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 254291000 | Staging and scales (staging scale) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Tumor Grade Assessmentc
Tumor Stage Assessmentc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has componentop
0 .. * Assessment Componentc
has codeop
0 .. 1 Yes
has namedp
0 .. 1 xsd:stringc
has resultop
0 .. 1 Assessment Resultc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 254291000 | Staging and scales (staging scale) |c

Used in
(In the range of)
has assessmentop

Assessment Component c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentComponent
Description

component of an assessment

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has resultop
0 .. 1 Assessment Resultc
has codeop
0 .. 1 Yes
has namedp
0 .. 1 xsd:stringc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 363787002 | Observable entity (observable entity) |c

Used in
(In the range of)
has componentop

Assessment Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentEvent
Description

evaluation at a given time, which takes into account a predefined scale, classification, staging or scoring system

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 386053000 | Evaluation procedure (procedure) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Tumor Grade Assessment Eventc
Tumor Stage Assessment Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has assessmentop
1 .. 1 Assessmentc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Assessment Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#AssessmentResult
Description

outcome of an assessment

Schema representation
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quantityop
0 .. 1 Quantityc
has codeop
0 .. 1 Codec or Terminologyc
has string valuedp
0 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has resultop

Billed Diagnosis c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis
Description

discharge diagnosis used for the billing system (e.g. for building the Diagnosis Related Groups) according to guidelines of the national authority (e.g. Swiss Federal Office of Public Health), e.g. K35.3 acute appendicitis with localized peritonitis

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 38999-9 | Hospital discharge DRG [Interpretation] |c
SNOMED 89100005 | Final diagnosis (discharge) (contextual qualifier) (qualifier value) |c
Parents
Diagnosisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has subject ageop
0 .. 1 Agec
has codeop
1 .. 1 Yes
has rankop
0 .. 1 Billed Diagnosis rankc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions
has codeop : descendants of the given classes are allowed

icd-10-gm:ICD-10-GMc

Billed Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BilledProcedure
Description

procedure, coded for billing (e.g. for building the Diagnosis Related Groups) according to guidelines of the national authority (e.g. Swiss Federal Office of Public Health), e.g. Z57.34 open biopsy of the urinary bladder

Schema representation
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has end datetimedp
0 .. 1 xsd:dateTimec
has codeop
1 .. 1 Yes
has rankop
0 .. 1 Billed Procedure rankc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has intentop
0 .. 1 Intentc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
Restrictions
has codeop : descendants of the given classes are allowed

CHOP CHOP | CHOP |c

Biobanksample c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Biobanksample
Description

biosample stored in a biobank

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has biobank namedp
1 .. 1 xsd:stringc
has identifierdp
1 .. 1 xsd:stringc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has sampleop
1 .. 1 Samplec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Birth c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Birth
Description

the event of being born

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has gestational ageop
0 .. 1 Gestational Age At Birthc
has dateop
0 .. 1 Birth Datec
has medical deviceop
0 .. * Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has delivery mode codeop
0 .. 1 Yes
has countryop
0 .. 1 Countryc
Restrictions
has delivery mode codeop : descendants of the given classes are allowed

SNOMED 118215003 | Delivery finding (finding) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Birth Date c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BirthDate
Description

the date and time of birth of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 184099003 | Date of birth (observable entity) |c
LOINC 21112-8 | Birth date |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has monthdp
0 .. 1 xsd:gMonthc
has timedp
0 .. 1 xsd:timec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has yeardp
1 .. 1 xsd:gYearc
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has daydp
0 .. 1 xsd:gDayc
has comparatorop
0 .. 1 Comparatorc
Restrictions None
Used in
(In the range of)
has dateop

Blood Pressure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressure
Description

blood pressure of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 75367002 | Blood pressure (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data fileop
0 .. 1 Time Series Data Filec
has mean pressureop
0 .. 1 Yes
has systolic pressureop
0 .. 1 Yes
has diastolic pressureop
0 .. 1 Yes
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has mean pressureop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:mmsblHgsbrc

has systolic pressureop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:mmsblHgsbrc

has diastolic pressureop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:mmsblHgsbrc

Used in
(In the range of)
has resultop

Blood Pressure Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BloodPressureMeasurement
Description

measurement process of a blood pressure on an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 46973005 | Blood pressure taking (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has method codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Yes
has resultop
1 .. * Blood Pressurec
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 716777001 | Hemodynamic monitoring (regime/therapy) |c SNOMED 46973005 | Blood pressure taking (procedure) |c

has body siteop / has codeop : descendants of the given classes are allowed

SNOMED 113257007 | Structure of cardiovascular system (body structure) |c SNOMED 40983000 | Structure of upper extremity between shoulder and elbow (body structure) |c SNOMED 68367000 | Thigh structure (body structure) |c SNOMED 8205005 | Wrist region structure (body structure) |c SNOMED 7569003 | Finger structure (body structure) |c SNOMED 344001 | Ankle region structure (body structure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Body Height c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeight
Description

height of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 50373000 | Body height measure (observable entity) |c
LOINC 8302-2 | Body height |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data determinationop
0 .. 1 Data Determinationc
has quantityop
1 .. 1 Quantityc
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions None
Used in
(In the range of)
has resultop

Body Height Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyHeightMeasurement
Description

measurement of the height of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 14456009 | Measuring height of patient (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has method codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has resultop
1 .. 1 Body Heightc
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Body Mass Index c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyMassIndex
Description

body weight in kilograms divided by the square of the body height in meters

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 60621009 | Body mass index (observable entity) |c
LOINC 39156-5 | Body mass index (BMI) [Ratio] |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has determination datetimedp
0 .. 1 xsd:dateTimec
has quantityop
1 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:kgperm2c

Body Position c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyPosition
Description

position of the body during a certain time interval, examination or therapy

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 397155001 | Body position (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
has codeop
1 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 9851009 | Body position finding (finding) |c

Body Site c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodySite
Description

any anatomical structure, any nonspecific and anatomical site, as well as morphologic abnormalities

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 123037004 | Body structure (body structure) |c
LOINC 39111-0 | Body site |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has lateralityop
0 .. 1 Lateralityc
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 123037004 | Body structure (body structure) |c

Used in
(In the range of)
has body siteop
has resting pointop
has insertion pointop

Body Surface Area c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodySurfaceArea
Description

two dimensional measure of the outer layer of the body

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 8277-6 | Body surface area |c
SNOMED 301898006 | Body surface area (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has determination datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
1 .. 1 Yes
has calculation methodop
0 .. 1 Body Surface Area calculation methodc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:m2c

Body Temperature c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperature
Description

body temperature of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 386725007 | Body temperature (observable entity) |c
LOINC 8310-5 | Body temperature |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has datetimedp
0 .. 1 xsd:dateTimec
has data fileop
0 .. 1 Time Series Data Filec
has quantityop
0 .. 1 Quantityc
Restrictions None
Used in
(In the range of)
has resultop

Body Temperature Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyTemperatureMeasurement
Description

measurement of the body temperature of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 56342008 | Temperature taking (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has method codeop
0 .. 1 Yes
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has resultop
1 .. * Body Temperaturec
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Body Weight c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeight
Description

weight of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 27113001 | Body weight (observable entity) |c
LOINC 29463-7 | Body weight |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data determinationop
0 .. 1 Data Determinationc
has quantityop
1 .. 1 Quantityc
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions None
Used in
(In the range of)
has resultop

Body Weight Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodyWeightMeasurement
Description

measurement of the weight of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 39857003 | Weighing patient (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has medical deviceop
0 .. 1 Medical Devicec
has resultop
1 .. 1 Body Weightc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
has method codeop
0 .. 1 Yes
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Cardiac Index c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CardiacIndex
Description

cardiac output in relation to the body surface area (BSA)

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 54993008 | Cardiac index (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has determination datetimedp
0 .. 1 xsd:dateTimec
has quantityop
1 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has method codeop
0 .. 1 Yes
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:Lperminperm2c

has method codeop : descendants of the given classes are allowed

SNOMED 63075001 | Monitoring of cardiac output/cardiac index (regime/therapy) |c

Cardiac Output c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutput
Description

volume of blood passing through the heart per unit of time

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 82799009 | Cardiac output (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has datetimedp
0 .. 1 xsd:dateTimec
has data fileop
0 .. 1 Time Series Data Filec
has quantityop
0 .. 1 Quantityc
Restrictions None
Used in
(In the range of)
has resultop

Cardiac Output Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CardiacOutputMeasurement
Description

measurement of the cardiac output of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 117610000 | Measurement of cardiac output (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has resultop
1 .. * Cardiac Outputc
has end datetimedp
0 .. 1 xsd:dateTimec
has performerop
0 .. 1 Performerc
has method codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Care Handling c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CareHandling
Description

describes the relationship between the individual and care provider institute

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 225365006 | Care regime (regime/therapy) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has type codeop
1 .. 1 Yes
Restrictions
has type codeop : descendants of the given classes are not allowed

SNOMED 394656005 | Inpatient care (regime/therapy) |c SNOMED 371883000 | Outpatient procedure (procedure) |c SNOMED 304903009 | Provision of day care (regime/therapy) |c

Used in
(In the range of)
has care handlingop

Chromosomal Location c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ChromosomalLocation
Description

chromosome locus defined as cytoband intervals

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000830 | chromosome_part |c
GENO 0000614 | chromosomal region |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has chromosomeop
1 .. 1 Chromosomec
has start cytoband codeop
1 .. 1 Codec
has end cytoband codeop
1 .. 1 Codec
Restrictions None
Notes

sphn:hasEndCytobandCode allowed coding system: ISCN

sphn:hasStartCytobandCode allowed coding system: ISCN

Used in
(In the range of)
has chromosomal locationop

Chromosome c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Chromosome
Description

thread-like structure composed of tightly coiled DNA and histones or circular DNA (mitochondrial DNA). These structures act as carriers of genetic information

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 48000-4 | Chromosome [Identifier] in Blood or Tissue by Molecular genetics method |c
SNOMED 91272006 | Chromosome (cell structure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 91272006 | Chromosome (cell structure) |c

Used in
(In the range of)
has chromosomeop

Circumference c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Circumference
Description

circumference of a body site

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 248365001 | Circumference measure (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quantityop
1 .. 1 Quantityc
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions None
Used in
(In the range of)
has resultop

Circumference Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CircumferenceMeasurement
Description

measurement of the circumference measure of a body site

Schema representation
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
0 .. 1 Medical Devicec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Yes
has resultop
1 .. 1 Circumferencec
has end datetimedp
0 .. 1 xsd:dateTimec
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has method codeop
0 .. 1 Yes
Restrictions
has body siteop / has codeop : descendants of the given classes are not allowed

SNOMED 69536005 | Head structure (body structure) |c SNOMED 33673004 | Structure of waist (surface region) (body structure) |c SNOMED 29836001 | Hip region structure (body structure) |c SNOMED 45048000 | Neck structure (body structure) |c

has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Civil Status c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CivilStatus
Description

the civil status indicates the familial and social situation of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 365581002 | Finding of marital or partnership status (finding) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
1 .. 1 Yes
has event datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 125681006 | Single person (finding) |c SNOMED 87915002 | Married (finding) |c SNOMED 33553000 | Widowed (finding) |c SNOMED 20295000 | Divorced (finding) |c SNOMED 14012001 | Common law partnership (finding) |c SNOMED 266945001 | Broken with partner (finding) |c

Code c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Code
Description

symbols and/or expressions defined in a coding system

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
1 .. 1 xsd:stringc
has coding system and versiondp
1 .. 1 xsd:stringc
has namedp
0 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has mode codeop
has graft type codeop
has allele origin codeop
has method codeop
has severity codeop
has cell count estimate codeop
has type codeop
has staining result codeop
has relative temporality codeop
has institution codeop
has codeop
has route codeop
has material type codeop
has format codeop
has circumstance codeop
has target enrichment kit codeop
has reaction type codeop
has verification status codeop
has agent codeop
has reason to stop codeop
has condition codeop
has delivery mode codeop
has output codeop
has staining method codeop
has certainty codeop
has status codeop
has product codeop
has regularity codeop
has start cytoband codeop
has zygosity codeop
has acquistion codeop
has kit codeop
has degree codeop
has end cytoband codeop
has manifestation codeop
has administration route codeop

Copy Number Variation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#CopyNumberVariation
Description

structural genomic variant characterized by relative changes in the number of copies of a specific genomic segment compared to a reference sequence

Schema representation
Meaning binding
(Equivalent-classes)
SO 0001019 | copy_number_variation |c
Parents
Genetic Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
1 .. 1 Yes
has total copy numberop
0 .. 1 Yes
has genomic positionop
0 .. 1 Genomic Positionc
has chromosomal locationop
0 .. 1 Chromosomal Locationc
has affected genomic featureop
0 .. * Genec
Restrictions
has type codeop : descendants of the given classes are not allowed

SO 0001742 | copy_number_gain |c SO 0001743 | copy_number_loss |c

has total copy numberop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:cblcopycbrc

Country c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Country
Description

distinct part of the world, such as a state, nation, or other political entity, often but not necessarily a sovereign state

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 223369002 | Country (geographic location) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 223369002 | Country (geographic location) |c

Used in
(In the range of)
has countryop
has associated countryop

Data Determination c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataDetermination
Description

describes how the data was determined, e.g. measured, calculated

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has method codeop
1 .. 1 Yes
Restrictions
has method codeop : descendants of the given classes are not allowed

SNOMED 258104002 | Measured (qualifier value) |c SNOMED 258090004 | Calculated (qualifier value) |c SNOMED 87982008 | Manual (qualifier value) |c SNOMED 414135002 | Estimated (qualifier value) |c SNOMED 263760002 | Forced (qualifier value) |c

Used in
(In the range of)
has data determinationop

Data File c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataFile
Description

electronic resource of information, which can be stored, accessed and transferred as a single unit

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Time Series Data Filec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has format codeop
0 .. 1 Yes
has data providerop
1 .. 1 Data Providerc
has namedp
0 .. 1 xsd:stringc
has source systemop
1 .. * Source Systemc
has uniform resource identifierdp
0 .. 1 xsd:stringc
has creation datetimedp
0 .. 1 xsd:dateTimec
has encodingop
0 .. 1 Data File encodingc
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has hashop
0 .. 1 Hashc
Restrictions
has format codeop : descendants of the given classes are allowed

edam:format_1915c

Used in
(In the range of)
has outputop
has data fileop
has inputop

Data Processing c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataProcessing
Description

a process that produces output data from input data

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Sequencing Analysisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has quality control metricop
0 .. * Quality Control Metricc
has codeop
1 .. 1 Yes
has inputop
0 .. * Data Filec
has administrative caseop
0 .. * Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has softwareop
0 .. 1 Softwarec
has outputop
0 .. * Data Filec
has data providerop
1 .. 1 Data Providerc
has predecessorop
0 .. * Data Processingc or Assayc
Restrictions
has codeop : descendants of the given classes are allowed

edam:operation_0004c obi:OBI_0200000c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: EDAM, OBI or other

Used in
(In the range of)
has predecessorop

Data Provider c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataProvider
Description

provider of data of interest

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has departmentop
0 .. 1 Departmentc
has institution codeop
1 .. 1 Codec
has categoryop
0 .. 1 Data Provider categoryc
Restrictions None
Notes

sphn:hasInstitutionCode allowed coding system: UID

Used in
(In the range of)
has data providerop

Data Release c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataRelease
Description

Metadata about the release of the data

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has extraction datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
dcterms:conformsTo
1 .. 1
Restrictions None

Death c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Death
Description

cessation of all vital bodily functions

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 419620001 | Death (event) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has circumstance codeop
0 .. 1 Yes
has dateop
0 .. 1 Death Datec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has report datetimedp
0 .. 1 xsd:dateTimec
has condition codeop
0 .. 1 Yes
Restrictions
has circumstance codeop : descendants of the given classes are allowed

SNOMED 419620001 | Death (event) |c icd-10-gm:ICD-10-GMc

has condition codeop : descendants of the given classes are allowed

SNOMED 64572001 | Disease (disorder) |c icd-10-gm:ICD-10-GMc

Notes

sphn:hasConditionCode allowed coding system: SNOMED CT, ICD-10-GM

sphn:hasCircumstanceCode allowed coding system: SNOMED CT, ICD-10-GM

Used in
(In the range of)
has deathop

Death Date c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DeathDate
Description

the date and time of death of the individual

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 81954-0 | Date of death [Date] |c
SNOMED 399753006 | Date of death (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has daydp
0 .. 1 xsd:gDayc
has monthdp
0 .. 1 xsd:gMonthc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has timedp
0 .. 1 xsd:timec
has yeardp
1 .. 1 xsd:gYearc
has source systemop
1 .. * Source Systemc
Restrictions None
Used in
(In the range of)
has dateop

Department c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Department
Description

dedicated division of an organization

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has namedp
1 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has departmentop

Diagnosis c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Diagnosis
Description

determination of the presence of a disease, condition, or injury from expressed signs and symptoms and assessments such as physical examination, laboratory test, or the like

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 439401001 | Diagnosis (observable entity) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Billed Diagnosisc
Oncology Diagnosisc
Nursing Diagnosisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has subject ageop
0 .. 1 Agec
has codeop
1 .. * Codec or Terminologyc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions None
Notes

sphn:hasCode allowed coding system: SNOMED CT, ICD-10-GM, ICD-O-3 Topography, ICD-O-3 Morphology, NANDA, ORDO or other

Used in
(In the range of)
has indication to startop

Drug c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Drug
Description

any substance with the intent to prevent, diagnose, treat, or relieve symptoms of a disease or abnormal condition

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 410942007 | Drug or medicament (substance) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has active ingredientop
0 .. * Substancec
has articleop
0 .. 1 Drug Articlec
has source systemop
1 .. * Source Systemc
has quantityop
0 .. 1 Quantityc
has inactive ingredientop
0 .. * Substancec
Restrictions None
Used in
(In the range of)
has drugop
has chemical agentop

Drug Administration Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DrugAdministrationEvent
Description

single event at which a drug was administered to the patient; this could be a single time point in case of a pill/cream or a duration in case of a single infusion pack or a single patch; one or many drug administration events are initiated by a drug prescription depending on the frequency stated in the prescription

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 182832007 | Procedure related to management of drug administration (procedure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has administration route codeop
0 .. 1 Yes
has end datetimedp
0 .. 1 xsd:dateTimec
has durationop
0 .. 1 Quantityc
has drugop
1 .. 1 Drugc
has time patternop
0 .. 1 Time Patternc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has reason to stop codeop
0 .. 1 Yes
Restrictions
has administration route codeop : descendants of the given classes are allowed

SNOMED 284009009 | Route of administration value (qualifier value) |c

has reason to stop codeop : descendants of the given classes are not allowed

SNOMED 441308009 | New diagnosis (observable entity) |c SNOMED 395009001 | Medication stopped - side effect (situation) |c SNOMED 182872003 | Drug discontinued - too expensive (situation) |c SNOMED 182846007 | Doctor stopped drugs - medical aim achieved (situation) |c SNOMED 395007004 | Medication stopped - ineffective (situation) |c SNOMED 31438003 | Drug resistance (disorder) |c SNOMED 182845006 | Doctor stopped drugs - avoid interaction (situation) |c SNOMED 182844005 | Doctor stopped drugs - patient dislikes (situation) |c SNOMED 419620001 | Death (event) |c SNOMED 399307001 | Lost to follow-up (finding) |c SNOMED 74964007 | Other (qualifier value) |c

Used in
(In the range of)
has oxygen flow rateop

Drug Article c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DrugArticle
Description

general details identifying a medication on the level of its commercial article

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has manufactured dose formop
0 .. 1 Pharmaceutical Dose Formc
has codeop
0 .. 1 Codec
has source systemop
1 .. * Source Systemc
has namedp
0 .. 1 xsd:stringc
Restrictions None
Notes

sphn:hasCode allowed coding system: GTIN

Used in
(In the range of)
has articleop

Drug Prescription c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#DrugPrescription
Description

plan that defines at which frequency a drug should be administered to a patient with a given quantity; at every frequency time point a drug administration event should occur

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 33633005 | Prescription of drug (procedure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has drugop
1 .. 1 Drugc
has time patternop
0 .. 1 Time Patternc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has last administration datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has first administration datetimedp
1 .. 1 xsd:dateTimec
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has intentop
0 .. * Intentc
has frequencyop
0 .. 1 Quantityc
has indication to startop
0 .. * Diagnosisc
has administration route codeop
0 .. 1 Yes
Restrictions
has administration route codeop : descendants of the given classes are allowed

SNOMED 284009009 | Route of administration value (qualifier value) |c

Electrocardiogram c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Electrocardiogram
Description

output of an electrocardiographic procedure

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data fileop
1 .. * Data Filec
Restrictions None
Notes

For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed

Used in
(In the range of)
has outputop

Electrocardiographic Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ElectrocardiographicProcedure
Description

electrographic procedure on the heart which results in a graph of voltage versus time visualizing the electrical activity of the heart muscle using electrodes placed on the skin

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 29303009 | Electrocardiographic procedure (procedure) |c
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject physiologic stateop
0 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Body Sitec
has intentop
0 .. 1 Yes
has end datetimedp
0 .. 1 xsd:dateTimec
has number of leadsop
0 .. 1 Quantityc
has administrative caseop
0 .. 1 Administrative Casec
has outputop
0 .. 1 Electrocardiogramc
has codeop
1 .. * Yes
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has subject physiologic stateop / has codeop : descendants of the given classes are not allowed

SNOMED 128975004 | Resting state (finding) |c SNOMED 128976003 | Exercise state (finding) |c

has intentop / has codeop : descendants of the given classes are not allowed

SNOMED 360156006 | Screening - procedure intent (qualifier value) |c SNOMED 261004008 | Diagnostic intent (qualifier value) |c

has codeop : descendants of the given classes are allowed

SNOMED 29303009 | Electrocardiographic procedure (procedure) |c

Excluded Disorder c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ExcludedDisorder
Description

determination of the absence of a disease

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 315215002 | Disorder excluded (situation) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has record datetimedp
1 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
1 .. * Codec or Terminologyc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions None
Notes

sphn:hasCode allowed coding system: SNOMED CT, ICD-10-GM, ICD-O-3 Topography, ICD-O-3 Morphology, NANDA, ORDO or other

Exposure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Exposure
Description

contact between a physical, biological, or chemical agent and an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 418715001 | Exposure to potentially harmful entity (event) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Tobacco Exposurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has agent codeop
0 .. 1 Yes
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
0 .. 1 Quantityc
has end datetimedp
0 .. 1 xsd:dateTimec
has durationop
0 .. 1 Quantityc
has degree codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has route codeop
0 .. * Yes
Restrictions
has agent codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

has degree codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

has route codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

Used in
(In the range of)
has exposureop

Fluid Balance c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#FluidBalance
Description

difference between fluid input and output during a specified time interval

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 364396009 | Fluid balance observable (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
1 .. 1 Quantityc
has fluid input outputop
0 .. * Fluid Input Outputc
has end datetimedp
1 .. 1 xsd:dateTimec
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions None

Fluid Input Output c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#FluidInputOutput
Description

gain or loss of fluid that impacts the fluid balance

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has substanceop
1 .. 1 Yes
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
1 .. 1 xsd:dateTimec
Restrictions
has substanceop / has codeop : descendants of the given classes are allowed

SNOMED 33463005 | Liquid substance (substance) |c

Used in
(In the range of)
has fluid input outputop

Follow Up c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#FollowUp
Description

procedure for following up on the patient status

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Yes
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has resultop
1 .. 1 Vital Statusc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 386473003 | Telephone follow-up (procedure) |c SNOMED 281036007 | Follow-up consultation (procedure) |c

Gene c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Gene
Description

fundamental unit of heredity that contains necessary elements to encode for a transcript

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 67271001 | Gene (substance) |c
SO 0000704 | gene |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has transcriptop
0 .. * Transcriptc
has organismop
0 .. 1 Organismc
has proteinop
0 .. * Proteinc
has codeop
1 .. 1 Codec or Terminologyc
Restrictions None
Notes

sphn:hasCode allowed coding system: HGNC, NCBI Gene, Ensembl or other

Used in
(In the range of)
has focus geneop
has geneop
has target moleculeop
has affected genomic featureop

Gene Panel c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenePanel
Description

collection of genes that have been grouped for testing

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has focus geneop
1 .. * Genec
has data fileop
0 .. * Data Filec
Restrictions None
Notes

For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed

Used in
(In the range of)
has gene panelop

Genetic Variation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GeneticVariation
Description

a genetic variation occurring at a defined position

Schema representation
Meaning binding
(Equivalent-classes)
SO 0001060 | sequence_variant |c
GENO 0000476 | variant |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Genomic Insertionc
Genomic Deletionc
Single Nucleotide Variationc
Copy Number Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has chromosomal locationop
0 .. 1 Chromosomal Locationc
has genomic positionop
0 .. 1 Genomic Positionc
Restrictions None
Used in
(In the range of)
has genetic variationop

Genomic Deletion c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenomicDeletion
Description

genetic variant involving the deletion of a specific location in a DNA sequence

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000159 | deletion |c
Parents
Genetic Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has genomic positionop
0 .. 1 Genomic Positionc
has genomic sequencedp
0 .. 1 xsd:stringc
has sequence lengthop
0 .. 1 Yes
has chromosomal locationop
0 .. 1 Chromosomal Locationc
Restrictions
has sequence lengthop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:cblbase_paircbrc

Genomic Insertion c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenomicInsertion
Description

genetic variant involving the addition of a DNA sequence in a specific location

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000667 | insertion |c
Parents
Genetic Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has genomic sequencedp
0 .. 1 xsd:stringc
has sequence lengthop
0 .. 1 Yes
has genomic positionop
0 .. 1 Genomic Positionc
has chromosomal locationop
0 .. 1 Chromosomal Locationc
Restrictions
has sequence lengthop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:cblbase_paircbrc

Genomic Position c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition
Description

genomic position with respect to a reference

Schema representation
Meaning binding
(Equivalent-classes)
GENO 0000902 | genomic feature location |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has coordinate conventionop
1 .. 1 Genomic Position coordinate conventionc
has startdp
1 .. 1 xsd:doublec
has referenceop
1 .. 1 Reference Sequencec
has enddp
1 .. 1 xsd:doublec
Restrictions None
Used in
(In the range of)
has genomic positionop

Gestational Age At Birth c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#GestationalAgeAtBirth
Description

gestational age of a child at birth

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 76516-4 | Gestational age--at birth |c
SNOMED 412726003 | Length of gestation at birth (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has quantityop
1 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:dc

Used in
(In the range of)
has gestational ageop

Hash c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Hash
Description

irreversible unique number computed on an information entity used to check its validity and integrity

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has algorithmop
1 .. 1 Hash algorithmc
has string valuedp
1 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has hashop

Healthcare Encounter c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HealthcareEncounter
Description

an interaction between an individual and a specific unit or service of a healthcare provider institute, e.g. emergency, intensive care unit, for the purpose of providing healthcare service(s) or assessing the health status of an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 308335008 | Patient encounter procedure (procedure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
1 .. 1 xsd:stringc
has current locationop
1 .. 1 Locationc
has origin locationop
0 .. 1 Locationc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has target locationop
0 .. 1 Locationc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
has therapeutic areaop
0 .. 1 Therapeutic Areac
Restrictions None

Healthcare Primary Information System c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HealthcarePrimaryInformationSystem
Description

primary source system of the healthcare data

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 706593004 | Information system (physical object) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Yes
has data providerop
0 .. 1 Data Providerc
has namedp
0 .. 1 xsd:stringc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 706593004 | Information system (physical object) |c

Used in
(In the range of)
has primary systemop

Heart Rate c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HeartRate
Description

frequency of the heart beats, i.e. the number of time a heart beats per unit of time

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 8867-4 | Heart rate |c
SNOMED 364075005 | Heart rate (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data fileop
0 .. 1 Time Series Data Filec
has quantityop
0 .. 1 Quantityc
has regularity codeop
0 .. 1 Yes
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has regularity codeop : descendants of the given classes are not allowed

SNOMED 271636001 | Pulse regular (finding) |c SNOMED 61086009 | Pulse irregular (finding) |c

Used in
(In the range of)
has resultop

Heart Rate Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HeartRateMeasurement
Description

measurement of the heart rate of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 65653002 | Pulse taking (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has method codeop
0 .. 1 Yes
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
0 .. 1 Medical Devicec
has resultop
1 .. * Heart Ratec
has subject physiologic stateop
0 .. 1 Physiologic Statec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

Home Address c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#HomeAddress
Description

permanent place of residence of an individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 397635003 | Address (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has end datetimedp
0 .. 1 xsd:dateTimec
has countryop
0 .. 1 Countryc
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has swiss socio economic positionop
0 .. * Swiss Socio Economic Positionc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Imaging Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ImagingProcedure
Description

imaging procedure used for examination of a body site or function

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 363679005 | Imaging (procedure) |c
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Body Sitec
has intentop
0 .. 1 Intentc
has end datetimedp
0 .. 1 xsd:dateTimec
has codeop
1 .. * Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 363679005 | Imaging (procedure) |c

Implant c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Implant
Description

implanted medical device, includes, e.g., heart valve prostheses or joint prostheses

Schema representation
Parents
Medical Devicec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
1 .. 1 Yes
has softwareop
0 .. * Softwarec
has product codeop
0 .. 1 Terminologyc or Codec
Restrictions
has type codeop : descendants of the given classes are allowed

SNOMED 40388003 | Implant, device (physical object) |c SNOMED 14106009 | Cardiac pacemaker, device (physical object) |c

Used in
(In the range of)
has medical deviceop

Implant Presence c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ImplantPresence
Description

presence of an implanted medical device

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has medical deviceop
1 .. 1 Implantc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has end datetimedp
0 .. 1 xsd:dateTimec
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions None

Inhaled Oxygen Concentration c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#InhaledOxygenConcentration
Description

fraction of inspired oxygen (FiO2) either calculated knowing the device used and the amount of oxygen administered or coming from the respiratory system settings

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 250774007 | Inspired oxygen concentration (observable entity) |c
LOINC 3150-0 | Inhaled oxygen concentration |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has oxygen flow rateop
0 .. 1 Drug Administration Eventc
has oxygen equipmentop
0 .. 1 Medical Devicec
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has data determinationop
0 .. 1 Data Determinationc
has quantityop
1 .. 1 Yes
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:percentc

Notes

For sphn:hasOxygenEquipment, instances of sphn:LabAnalyzer, sphn:Implant are not allowed

Insurance Status c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#InsuranceStatus
Description

status of the patient's medical insurance

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 87520-3 | Coverage type |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has coverage typeop
1 .. 1 Insurance Status coverage typec
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions None

Intent c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Intent
Description

treatment or procedure purpose

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 363675004 | Intents (nature of procedure values) (qualifier value) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 363675004 | Intents (nature of procedure values) (qualifier value) |c

Used in
(In the range of)
has intentop

Interpretation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Interpretation
Description

process of making sense of an outcome to derive meaningful conclusions

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Reference Interpretationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has standard guidelinedp
0 .. * xsd:stringc
has inputop
0 .. * SPHN Conceptc
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has outputop
1 .. * SPHN Conceptc
has data providerop
1 .. 1 Data Providerc
Restrictions None

Isolate c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Isolate
Description

a specific individual microbe and its clone separated on a single occasion from a sample taken from a host or culture system

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 119303007 | Microbial isolate specimen (specimen) |c
Parents
Samplec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
0 .. * xsd:stringc
has collection datetimedp
1 .. 1 xsd:dateTimec
has material type codeop
0 .. * Yes
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has shared identifierdp
0 .. * xsd:anyURIc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has organismop
0 .. 1 Organismc
has primary containerop
0 .. 1 Sample primary containerc
has fixation typeop
0 .. 1 Sample fixation typec
Restrictions
has material type codeop : descendants of the given classes are allowed

SNOMED 123038009 | Specimen (specimen) |c

Used in
(In the range of)
has sampleop

Lab Analyzer c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabAnalyzer
Description

laboratory analyzer used to assess medical laboratory samples

Schema representation
Parents
Medical Devicec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
0 .. 1 Yes
has softwareop
0 .. * Softwarec
has product codeop
0 .. 1 Terminologyc or Codec
Restrictions
has type codeop : descendants of the given classes are allowed

Codec emdn:EMDNc

Notes

sphn:hasProductCode allowed coding system: UDI-DI from GUDID or other

sphn:hasTypeCode allowed coding system: GMDN, EMDN

Used in
(In the range of)
has test kitop
has instrumentop

Lab Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabResult
Description

outcome, value, or information which gives insight about a laboratory test

Schema representation
Parents
Resultc
Children
(Sub-classes)
Microbiology Microscopy Resultc
Microorganism Identification Resultc
Antimicrobial Susceptibility Resultc
Microbiology Biomolecule Presence Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Codec or Terminologyc
has string valuedp
0 .. 1 xsd:stringc
has quantityop
0 .. 1 Quantityc
has numerical referenceop
0 .. 1 Reference Rangec or Reference Valuec
Restrictions None
Used in
(In the range of)
has resultop

Lab Test c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabTest
Description

specific laboratory test performed to analyze a sample with a given equipment and leading to specific results

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 15220000 | Laboratory test (procedure) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Microbiology Microscopy Lab Testc
Antimicrobial Susceptibility Lab Testc
Microbiology Biomolecule Presence Lab Testc
Microorganism Identification Lab Testc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has test kitop
0 .. 1 Lab Analyzerc
has codeop
1 .. 1 Yes
has resultop
1 .. * Lab Resultc
has instrumentop
0 .. 1 Lab Analyzerc
Restrictions
has codeop : descendants of the given classes are allowed

sphn-loinc:LOINCc SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

Notes

For sphn:hasResult, instances of sphn:AntimicrobialSusceptibilityResult, sphn:MicrobiologyBiomoleculePresenceResult, sphn:MicrobiologyMicroscopyResult, sphn:MicroorganismIdentificationResult are not allowed

sphn:hasCode allowed coding system: LOINC, SNOMED CT

Used in
(In the range of)
has lab testop

Lab Test Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LabTestEvent
Description

occurrence in which one or multiple laboratory tests are performed on a biological specimen at a given time

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Microbiology Microscopy Lab Test Eventc
Microbiology Biomolecule Presence Lab Test Eventc
Microorganism Identification Lab Test Eventc
Antimicrobial Susceptibility Lab Test Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has report datetimedp
0 .. 1 xsd:dateTimec
has sampleop
0 .. 1 Samplec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has lab testop
1 .. * Lab Testc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
Restrictions None
Notes

For sphn:hasLabTest, instances of sphn:AntimicrobialSusceptibilityLabTest, sphn:MicrobiologyBiomoleculePresenceLabTest, sphn:MicrobiologyMicroscopyLabTest, sphn:MicroorganismIdentificationLabTest are not allowed

Laterality c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Laterality
Description

localization with respect to the side of the body

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 20228-3 | Anatomic part Laterality |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 7771000 | Left (qualifier value) |c SNOMED 24028007 | Right (qualifier value) |c SNOMED 51440002 | Right and left (qualifier value) |c SNOMED 66459002 | Unilateral (qualifier value) |c

Used in
(In the range of)
has lateralityop

Library Preparation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#LibraryPreparation
Description

process which results in the creation of a library from fragments of DNA

Schema representation
Meaning binding
(Equivalent-classes)
obi:OBI_0000711c
Parents
Sample Processingc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has gene panelop
0 .. 1 Gene Panelc
has quality control metricop
0 .. * Quality Control Metricc
has codeop
0 .. 1 Yes
has inputop
0 .. * Samplec
has administrative caseop
0 .. * Administrative Casec
has target enrichment kit codeop
0 .. 1 Codec or Terminologyc
has outputop
0 .. 1 Samplec
has data providerop
1 .. 1 Data Providerc
has start datetimedp
0 .. 1 xsd:dateTimec
has intended insert sizeop
0 .. 1 Quantityc
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has predecessorop
0 .. * Sample Processingc
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has kit codeop
0 .. 1 Terminologyc or Codec
Restrictions
has codeop : descendants of the given classes are allowed

obi:OBI_0000711c Codec Terminologyc

Notes

For sphn:hasOutput, instances of sphn:TumorSpecimen are not allowed

sphn:hasTargetEnrichmentKitCode allowed coding system: EFO, GENEPIO, FAIRGenomes or other

sphn:hasCode allowed coding system: OBI, EFO or other

sphn:hasKitCode allowed coding system: EFO, GENEPIO, FAIRGenomes or other

Used in
(In the range of)
has library preparationop

Location c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Location
Description

physical location or medical division taking care of the individual

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has exactdp
0 .. 1 xsd:stringc
has type codeop
1 .. 1 Yes
has data providerop
1 .. 1 Data Providerc
Restrictions
has type codeop : descendants of the given classes are allowed

SNOMED 276339004 | Environment (environment) |c

Used in
(In the range of)
has target locationop
has discharge locationop
has locationop
has current locationop
has origin locationop

Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Measurement
Description

process of quantitatively defining the value or magnitude of an attribute or characteristic in comparison to a defined standard

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 122869004 | Measurement procedure (procedure) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Heart Rate Measurementc
Oxygen Saturation Measurementc
Body Weight Measurementc
Body Temperature Measurementc
Circumference Measurementc
Blood Pressure Measurementc
Cardiac Output Measurementc
Body Height Measurementc
Respiratory Rate Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has method codeop
0 .. 1 Yes
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has medical deviceop
0 .. 1 Medical Devicec
has resultop
1 .. * Resultc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

For sphn:hasResult, instances of sphn:LabResult, sphn:VitalStatus, sphn:AntimicrobialSusceptibilityResult, sphn:MicrobiologyBiomoleculePresenceResult, sphn:MicrobiologyMicroscopyResult, sphn:MicroorganismIdentificationResult are not allowed

Medical Device c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MedicalDevice
Description

product intended for medical use when the main effect is not achieved by a medicinal product; medical devices include, but are not limited to, implants, instruments, devices, in vitro diagnostics

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 63653004 | Biomedical device (physical object) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Access Devicec
Lab Analyzerc
Implantc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
0 .. 1 Yes
has softwareop
0 .. * Softwarec
has product codeop
0 .. 1 Terminologyc or Codec
Restrictions
has type codeop : descendants of the given classes are allowed

SNOMED 272181003 | Clinical equipment and/or device (physical object) |c Codec Terminologyc

Notes

sphn:hasTypeCode allowed coding system: SNOMED CT or other

Used in
(In the range of)
has oxygen equipmentop
has medical deviceop

Medical Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MedicalProcedure
Description

invasive or non-invasive intervention performed for, with or on behalf of an individual whose purpose is to assess, improve, maintain, promote or modify health, functioning or health conditions

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 71388002 | Procedure (procedure) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Oncology Surgeryc
Radiotherapy Procedurec
Billed Procedurec
Imaging Procedurec
Electrocardiographic Procedurec
Organ Supportc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has intentop
0 .. 1 Intentc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Body Sitec
has end datetimedp
0 .. 1 xsd:dateTimec
has codeop
1 .. * Codec or Terminologyc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions None
Notes

sphn:hasCode allowed coding system: SNOMED CT, CHOP or other

Microbiology Biomolecule Presence Lab Test c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTest
Description

specific lab test performed on an isolate for detecting the presence of a target biomolecule

Schema representation
Parents
Lab Testc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has target moleculeop
1 .. 1 Genec or Proteinc
has test kitop
0 .. 1 Lab Analyzerc
has codeop
1 .. 1 Yes
has resultop
1 .. * Microbiology Biomolecule Presence Resultc
has instrumentop
0 .. 1 Lab Analyzerc
Restrictions
has codeop : descendants of the given classes are allowed

sphn-loinc:LOINCc SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

Used in
(In the range of)
has lab testop

Microbiology Biomolecule Presence Lab Test Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceLabTestEvent
Description

occurrence in which one or multiple laboratory tests are performed on an isolate at a given time to detect the presence of a biomolecule

Schema representation
Parents
Lab Test Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has lab testop
1 .. * Microbiology Biomolecule Presence Lab Testc
has administrative caseop
0 .. 1 Administrative Casec
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has report datetimedp
0 .. 1 xsd:dateTimec
has sampleop
1 .. 1 Isolatec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Microbiology Biomolecule Presence Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyBiomoleculePresenceResult
Description

result of microbiology biomolecule presence test for a specific isolate analyzed

Schema representation
Parents
Lab Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Yes
has string valuedp
0 .. 1 xsd:stringc
has quantityop
0 .. 1 Quantityc
has numerical referenceop
0 .. 1 Reference Rangec or Reference Valuec
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 10828004 | Positive (qualifier value) |c SNOMED 260385009 | Negative (qualifier value) |c SNOMED 373068000 | Undetermined (qualifier value) |c

Used in
(In the range of)
has resultop

Microbiology Microscopy Lab Test c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTest
Description

specific microbiology microscopy lab test performed on a sample

Schema representation
Parents
Lab Testc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has resultop
1 .. * Microbiology Microscopy Resultc
has staining method codeop
0 .. 1 Yes
has instrumentop
0 .. 1 Lab Analyzerc
has codeop
1 .. 1 Yes
has test kitop
0 .. 1 Lab Analyzerc
Restrictions
has staining method codeop : descendants of the given classes are allowed

SNOMED 37926009 | Microbial stain method (procedure) |c

has codeop : descendants of the given classes are allowed

SNOMED 117259009 | Microscopy (procedure) |c

Used in
(In the range of)
has lab testop

Microbiology Microscopy Lab Test Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyLabTestEvent
Description

occurrence in which one or multiple microbiology microscopy laboratory tests are performed on a sample at a given time

Schema representation
Parents
Lab Test Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has lab testop
1 .. * Microbiology Microscopy Lab Testc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has report datetimedp
0 .. 1 xsd:dateTimec
has sampleop
1 .. 1 Samplec
Restrictions None
Notes

For sphn:hasSample, instances of sphn:TumorSpecimen are not allowed

Microbiology Microscopy Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult
Description

microscopy analysis results for a specific studied biosample in microbiology

Schema representation
Parents
Lab Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has string valuedp
0 .. 1 xsd:stringc
has cell count estimate codeop
0 .. 1 Yes
has staining result codeop
0 .. 1 Yes
has cell morphologyop
0 .. 1 Microbiology Microscopy Result cell morphologyc
has quantityop
0 .. 1 Quantityc
has cell organizationop
0 .. 1 Microbiology Microscopy Result cell organizationc
has numerical referenceop
0 .. 1 Reference Rangec or Reference Valuec
Restrictions
has cell count estimate codeop : descendants of the given classes are not allowed

SNOMED 260413007 | None (qualifier value) |c SNOMED 57176003 | Few (qualifier value) |c SNOMED 260396001 | Numerous (qualifier value) |c SNOMED 46998006 | Massive (qualifier value) |c

has staining result codeop : descendants of the given classes are not allowed

SNOMED 373068000 | Undetermined (qualifier value) |c SNOMED 10828004 | Positive (qualifier value) |c SNOMED 260385009 | Negative (qualifier value) |c

Used in
(In the range of)
has resultop

Microorganism Identification Lab Test c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTest
Description

specific lab test performed on a sample for identifying microorganism(s)

Schema representation
Parents
Lab Testc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
has resultop
1 .. * Microorganism Identification Resultc
has instrumentop
0 .. 1 Lab Analyzerc
has test kitop
0 .. 1 Lab Analyzerc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 19851009 | Microbiology procedure (procedure) |c

Used in
(In the range of)
has lab testop

Microorganism Identification Lab Test Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationLabTestEvent
Description

occurrence in which one or multiple laboratory tests are performed on a sample at a given time for identifying microorganism(s)

Schema representation
Parents
Lab Test Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has sampleop
1 .. 1 Samplec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has report datetimedp
0 .. 1 xsd:dateTimec
has lab testop
1 .. * Microorganism Identification Lab Testc
Restrictions None
Notes

For sphn:hasSample, instances of sphn:TumorSpecimen are not allowed

Microorganism Identification Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicroorganismIdentificationResult
Description

result of the microorganism identification lab test

Schema representation
Parents
Lab Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has organismop
0 .. 1 Organismc
has numerical referenceop
0 .. 1 Reference Rangec or Reference Valuec
has time to positivityop
0 .. 1 Quantityc
has codeop
0 .. 1 Yes
has string valuedp
0 .. 1 xsd:stringc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 2667000 | Absent (qualifier value) |c SNOMED 52101004 | Present (qualifier value) |c SNOMED 373068000 | Undetermined (qualifier value) |c

Used in
(In the range of)
has resultop

Nationality c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Nationality
Description

nationality of the individual

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has associated countryop
1 .. 1 Countryc
has acquistion codeop
0 .. 1 Yes
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
Restrictions
has acquistion codeop : descendants of the given classes are not allowed

SNOMED 255396000 | Acquired (qualifier value) |c SNOMED 19535007 | Original (qualifier value) |c

Nursing Diagnosis c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#NursingDiagnosis
Description

clinical judgment concerning a human response to health conditions/life processes, or a vulnerability for that response, by an individual, family, group or community; a nursing diagnosis provides the basis for selection of nursing interventions to achieve outcomes for which the nurse has accountability

Schema representation
Parents
Diagnosisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject ageop
0 .. 1 Agec
has codeop
1 .. 1 Codec
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None
Notes

sphn:hasCode allowed coding system: NANDA

Nutrition Intake c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#NutritionIntake
Description

intake of nutritious substance and/or the respective amount of energy consumed

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has mode codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has substanceop
0 .. * Substancec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has energy quantityop
0 .. 1 Quantityc
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has mode codeop : descendants of the given classes are not allowed

SNOMED 926365009 | Parenteral nutrition infusion finding (finding) |c SNOMED 926364008 | Enteral nutrition infusion finding (finding) |c SNOMED 289002003 | Does feed self (finding) |c SNOMED 169741004 | Breast fed (finding) |c SNOMED 268472006 | Infant bottle fed (finding) |c

Oncology Diagnosis c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#OncologyDiagnosis
Description

determination of the presence of an oncological disease, from expressed signs and symptoms and assessments such as biopsy, tumor marker test, imaging, or the like

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 363346000 | Malignant neoplastic disease (disorder) |c
Parents
Diagnosisc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. * Yes
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has record datetimedp
0 .. 1 xsd:dateTimec
has incidence datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
1 .. 1 Body Sitec
has subject ageop
0 .. 1 Agec
Restrictions
has codeop : descendants of the given classes are allowed

Codec icd-10-gm:ICD-10-GMc

Notes

sphn:hasCode allowed coding system: ICD-10-GM, ICD-O-3 Morphology, ICD-O-3 Topography, OncoTree

Oncology Surgery c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#OncologySurgery
Description

invasive intervention performed for, with or on behalf of an individual whose purpose is to improve, maintain or promote health, or functioning conditions in the context of an oncological disease, by the means of partial or complete exeresis of a solid tumor lesion that is the organic substrate of this disease

Schema representation
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. 1 Administrative Casec
has codeop
1 .. * Codec or Terminologyc
has data providerop
1 .. 1 Data Providerc
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Body Sitec
has intentop
0 .. 1 Intentc
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions None

Organ Support c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#OrganSupport
Description

type and time period when patient was supported by organ support procedures

Schema representation
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has intentop
0 .. 1 Yes
has end datetimedp
0 .. 1 xsd:dateTimec
has administrative caseop
0 .. 1 Administrative Casec
has codeop
1 .. 1 Yes
has data providerop
1 .. 1 Data Providerc
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Yes
Restrictions
has intentop / has codeop : descendants of the given classes are not allowed

SNOMED 399707004 | Supportive - procedure intent (qualifier value) |c

has codeop : descendants of the given classes are allowed

SNOMED 232957001 | Cardiac support procedure (procedure) |c SNOMED 108241001 | Dialysis procedure (procedure) |c SNOMED 233573008 | Extracorporeal membrane oxygenation (procedure) |c SNOMED 1222606000 | Continuous mandatory ventilation (regime/therapy) |c SNOMED 1149092001 | Positive pressure airway ventilation (regime/therapy) |c

has body siteop / has codeop : descendants of the given classes are allowed

SNOMED 39607008 | Lung structure (body structure) |c SNOMED 80891009 | Heart structure (body structure) |c SNOMED 10200004 | Liver structure (body structure) |c SNOMED 64033007 | Kidney structure (body structure) |c

Organism c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Organism
Description

living system capable of replicating or reproducing, growth and maintenance. An organism may be unicellular or multicellular

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 410607006 | Organism (organism) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 410607006 | Organism (organism) |c Codec

Notes

sphn:hasCode allowed coding system: SNOMED CT, NCBI Taxon

Used in
(In the range of)
has organismop

Oxygen Saturation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturation
Description

fraction of oxygen present in the blood

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 103228002 | Hemoglobin saturation with oxygen (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has datetimedp
0 .. 1 xsd:dateTimec
has data fileop
0 .. 1 Time Series Data Filec
has quantityop
0 .. 1 Yes
Restrictions
has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:percentc

Used in
(In the range of)
has resultop

Oxygen Saturation Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#OxygenSaturationMeasurement
Description

measurement of the oxygen saturation of the individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 104847001 | Oxygen saturation measurement (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has method codeop
0 .. 1 Yes
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has medical deviceop
0 .. 1 Medical Devicec
has resultop
1 .. * Oxygen Saturationc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has end datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer are not allowed

sphn:hasBodySite/sphn:hasCode recommended values: SNOMED 29707007 | Toe structure (body structure) |c, SNOMED 7569003 | Finger structure (body structure) |c, SNOMED 48800003 | Ear lobule structure (body structure) |c

Performer c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Performer
Description

person who carried out the action

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 125676002 | Person (person) |c SNOMED 14679004 | Occupation (occupation) |c

Used in
(In the range of)
has performerop

Pharmaceutical Dose Form c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#PharmaceuticalDoseForm
Description

physical manifestation of a product that contains the active ingredient(s) and/or inactive ingredient(s) that are intended to be delivered to the patient

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 74055-5 | Dose form of Medication |c
SNOMED 736542009 | Pharmaceutical dose form (dose form) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 736542009 | Pharmaceutical dose form (dose form) |c Codec

Notes

sphn:hasCode allowed coding system: SNOMED CT, EDQM:EDQMPDF

Used in
(In the range of)
has manufactured dose formop

Physiologic State c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#PhysiologicState
Description

physiologic state of the individual, e.g. resting, exercise

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 128973006 | Finding related physiologic patient state (finding) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 128973006 | Finding related physiologic patient state (finding) |c

Used in
(In the range of)
has subject physiologic stateop

Problem Condition c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ProblemCondition
Description

clinical condition, problem, diagnosis, or other event, situation, issue, or clinical concept that has risen to a level of concern

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 44100-6 | Medical problem |c
SNOMED 55607006 | Problem (finding) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has onset datetimedp
0 .. 1 xsd:dateTimec
has string valuedp
0 .. 1 xsd:stringc
has administrative caseop
0 .. 1 Administrative Casec
has relative temporality codeop
0 .. 1 Yes
has codeop
0 .. 1 Codec or Terminologyc
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has record datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has relative temporality codeop : descendants of the given classes are allowed

SNOMED 307152002 | Temporal periods relating to procedure (qualifier value) |c

Notes

sphn:hasCode allowed coding system: ICPC or other

Protein c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Protein
Description

molecule composed by one or more chains of amino acids

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000104 | polypeptide |c
SNOMED 88878007 | Protein (substance) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has organismop
0 .. 1 Organismc
has codeop
1 .. 1 Codec or Terminologyc
Restrictions None
Notes

sphn:hasCode allowed coding system: UniProtKB or other

Used in
(In the range of)
has proteinop
has target moleculeop

Quality Control Metric c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#QualityControlMetric
Description

report of the quality control review that was made of factors involved in a procedure

Schema representation
Meaning binding
(Equivalent-classes)
edam:data_3914c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
1 .. 1 Data Providerc
has quantityop
0 .. 1 Quantityc
has codeop
0 .. 1 Codec or Terminologyc
Restrictions None
Notes

sphn:hasCode allowed coding system: SNOMED CT, GENEPIO or other

Used in
(In the range of)
has quality control metricop

Quantity c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Quantity
Description

an amount or a number of something

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has unitop
1 .. 1 Unitc
has comparatorop
0 .. 1 Comparatorc
has valuedp
1 .. 1 Yes
Restrictions
has valuedp : descendants of the given classes are not allowed

xsd:doublec

Used in
(In the range of)
has mean read depthop
has energy quantityop
has mean pressureop
has sequence lengthop
has lower limitop
has frequencyop
has durationop
has tumor purityop
has time to positivityop
has read countop
has intended read lengthop
has intended read depthop
has radiation quantityop
has number of leadsop
has average insert sizeop
has systolic pressureop
has upper limitop
has average read lengthop
has entry countop
has diastolic pressureop
has total copy numberop
has intended insert sizeop
has distanceop
has fractions numberop
has quantityop

Radiotherapy Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#RadiotherapyProcedure
Description

given radiotherapy procedure during oncological treatment

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 108290001 | Radiation oncology AND/OR radiotherapy (procedure) |c
Parents
Medical Procedurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has fractions numberop
0 .. 1 Quantityc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. * Body Sitec
has intentop
0 .. 1 Intentc
has end datetimedp
0 .. 1 xsd:dateTimec
has administrative caseop
0 .. 1 Administrative Casec
has codeop
1 .. * Yes
has data providerop
1 .. 1 Data Providerc
has radiation quantityop
0 .. 1 Yes
has start datetimedp
1 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 33195004 | External beam radiation therapy procedure (procedure) |c SNOMED 115959002 | Stereotactic radiosurgery (procedure) |c SNOMED 395096001 | Stereotactic radiotherapy (procedure) |c SNOMED 152198000 | Brachytherapy (procedure) |c SNOMED 399315003 | Radionuclide therapy (procedure) |c SNOMED 168524008 | Radiotherapy - intraoperative control (procedure) |c SNOMED 78080008 | Hyperthermia treatment of cancer (procedure) |c SNOMED 74964007 | Other (qualifier value) |c

has radiation quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:Gyc ucum:cGyc ucum:mCic ucum:MBqc

Reference Interpretation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretation
Description

process of making sense of a quantitative result to derive meaningful conclusions in comparison to a reference

Schema representation
Parents
Interpretationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has inputop
0 .. 1 Resultc
has datetimedp
0 .. 1 xsd:dateTimec
has outputop
1 .. 1 Reference Interpretation Resultc
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
has standard guidelinedp
0 .. * xsd:stringc
Restrictions None
Notes

For sphn:hasInput, instances of sphn:TumorGradeAssessmentResult, sphn:⁠TumorStageAssessmentResult, sphn:VitalStatus are not allowed

Reference Interpretation Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceInterpretationResult
Description

outcome of the interpretation of a reference range or value

Schema representation
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 260245000 | Finding value (qualifier value) |c

Used in
(In the range of)
has outputop

Reference Range c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceRange
Description

interval of values that is deemed normal for a physiologic measurement in healthy individuals

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has upper limitop
0 .. 1 Quantityc
has lower limitop
0 .. 1 Quantityc
Restrictions None
Used in
(In the range of)
has numerical referenceop

Reference Sequence c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceSequence
Description

reference construct used for comparison purposes

Schema representation
Meaning binding
(Equivalent-classes)
GENO 0000017 | reference sequence |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Codec or Terminologyc
Restrictions None
Notes

sphn:hasCode allowed coding system: NCBI GenBank or other

Used in
(In the range of)
has referenceop
has reference sequenceop

Reference Value c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ReferenceValue
Description

numeric data point serving as reference for comparison and interpretation

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quantityop
1 .. 1 Quantityc
Restrictions None
Used in
(In the range of)
has numerical referenceop

Respiratory Rate c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRate
Description

frequency at which the breathing occurs

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 86290005 | Respiratory rate (observable entity) |c
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has datetimedp
0 .. 1 xsd:dateTimec
has data fileop
0 .. 1 Time Series Data Filec
has data determinationop
0 .. 1 Yes
has quantityop
0 .. 1 Quantityc
Restrictions
has data determinationop / has method codeop : descendants of the given classes are not allowed

SNOMED 258104002 | Measured (qualifier value) |c SNOMED 258090004 | Calculated (qualifier value) |c SNOMED 87982008 | Manual (qualifier value) |c SNOMED 263760002 | Forced (qualifier value) |c

Used in
(In the range of)
has resultop

Respiratory Rate Measurement c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#RespiratoryRateMeasurement
Description

measurement of the frequency at which the breathing occurs

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 408867002 | Taking respiratory rate (procedure) |c
Parents
Measurementc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has start datetimedp
1 .. 1 xsd:dateTimec
has medical deviceop
0 .. 1 Medical Devicec
has resultop
1 .. * Respiratory Ratec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has end datetimedp
0 .. 1 xsd:dateTimec
has method codeop
0 .. 1 Yes
has performerop
0 .. 1 Performerc
has administrative caseop
0 .. 1 Administrative Casec
Restrictions
has method codeop : descendants of the given classes are allowed

SNOMED 128927009 | Procedure by method (procedure) |c

Notes

For sphn:hasMedicalDevice, instances of sphn:AccessDevice, sphn:LabAnalyzer, sphn:Implant are not allowed

Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Result
Description

outcome, value, or information which gives insight about something

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Vital Statusc
Lab Resultc
Assessment Resultc
Circumferencec
Oxygen Saturationc
Blood Pressurec
Reference Interpretation Resultc
Tumor Grade Assessment Resultc
Cardiac Outputc
Respiratory Ratec
Body Temperaturec
Body Heightc
Body Weightc
Tumor Stage Assessment Resultc
Heart Ratec
Used in
(In the range of)
has inputop
has resultop

Resuscitation Directive c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#ResuscitationDirective
Description

decision about the extent of resuscitation interventions appropriate for a specific individual

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 304251008 | Resuscitation status (observable entity) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has data providerop
0 .. 1 Data Providerc
has record datetimedp
0 .. * xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
1 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 365870005 | Finding of resuscitation status (finding) |c

SPHN Concept c# Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SPHNConcept
Description

SPHN Concepts defined by the SPHN dataset

Children
(Sub-classes)
Resuscitation Directivec
Administrative Casec
Agec
Chromosomal Locationc
Locationc
Transcriptc
Follow Upc
Deathc
Lab Test Eventc
Interpretationc
Allergyc
Genec
Semantic Mappingc
Access Device Presencec
Measurementc
Physiologic Statec
Proteinc
Softwarec
Excluded Disorderc
Care Handlingc
Pharmaceutical Dose Formc
Body Surface Areac
Reference Rangec
Organismc
Electrocardiogramc
Reference Valuec
Unitc
Data Providerc
Assessmentc
Fluid Input Outputc
Body Positionc
Variant Descriptorc
Quantityc
Departmentc
Drug Prescriptionc
Birthc
Body Mass Indexc
Cardiac Indexc
Inhaled Oxygen Concentrationc
Administrative Sexc
Healthcare Primary Information Systemc
Terminologyc
Genetic Variationc
Swiss Socio Economic Positionc
Time Patternc
Medical Devicec
Home Addressc
Hashc
Subject Pseudo Identifierc
Healthcare Encounterc
Diagnosisc
Drug Administration Eventc
Transplantc
Sample Processingc
Data Processingc
Lab Testc
Value Setc
Sequencing Instrumentc
Drugc
Assessment Componentc
Allergenc
Reference Sequencec
Countryc
Consentc
Chromosomec
Samplec
Standard Operating Procedurec
Substancec
Fluid Balancec
Source Datac
Data Determinationc
Gene Panelc
Gestational Age At Birthc
Birth Datec
Quality Control Metricc
Nutrition Intakec
Civil Statusc
Allergy Episodec
Death Datec
Data Filec
Performerc
Therapeutic Areac
Medical Procedurec
Body Sitec
Biobanksamplec
Drug Articlec
Genomic Positionc
Exposurec
Assessment Eventc
Implant Presencec
Nationalityc
Resultc
Variant Notationc
Data Releasec
Codec
Insurance Statusc
Transplant Presencec
Adverse Eventc
Problem Conditionc
Sequencing Runc
Source Systemc
Assayc
Intentc
Lateralityc
Used in
(In the range of)
has categoryop
has consequencesop
has outcomeop
has calculation methodop
has fixation typeop
has purposeop
has cell organizationop
has primary containerop
has coordinate conventionop
has inputop
has specialty nameop
has outputop
has comparatorop
has rankop
has encodingop
has coverage typeop
has cell morphologyop
has algorithmop

Sample c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Sample
Description

any material sample for testing, diagnostic, propagation, treatment or research purposes

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 123038009 | Specimen (specimen) |c
Parents
SPHN Conceptc
Children
(Sub-classes)
Tumor Specimenc
Isolatec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
0 .. * xsd:stringc
has collection datetimedp
1 .. 1 xsd:dateTimec
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. 1 Data Providerc
has material type codeop
0 .. * Yes
has shared identifierdp
0 .. * xsd:anyURIc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has primary containerop
0 .. 1 Sample primary containerc
has fixation typeop
0 .. 1 Sample fixation typec
Restrictions
has material type codeop : descendants of the given classes are allowed

SNOMED 123038009 | Specimen (specimen) |c

Used in
(In the range of)
has inputop
has outputop
has sampleop

Sample Processing c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SampleProcessing
Description

a process that prepares a sample for a subsequent process

Schema representation
Parents
SPHN Conceptc
Children
(Sub-classes)
Library Preparationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has quality control metricop
0 .. * Quality Control Metricc
has outputop
0 .. * Samplec
has codeop
0 .. 1 Codec or Terminologyc
has inputop
0 .. * Samplec
has administrative caseop
0 .. * Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has data providerop
1 .. 1 Data Providerc
has predecessorop
0 .. * Sample Processingc
Restrictions None
Notes

For sphn:hasOutput, instances of sphn:TumorSpecimen are not allowed

Used in
(In the range of)
has predecessorop

Semantic Mapping c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SemanticMapping
Description

process of transforming data elements to a code

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has output codeop
1 .. 1 Terminologyc or Codec
has source dataop
0 .. * Source Datac
has purposeop
0 .. 1 Semantic Mapping purposec
has data providerop
1 .. 1 Data Providerc
has method codeop
0 .. 1 Yes
has source systemop
1 .. * Source Systemc
has datetimedp
0 .. 1 xsd:dateTimec
Restrictions
has method codeop : descendants of the given classes are allowed

obi:ECO_0000217c

Sequencing Analysis c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAnalysis
Description

analysis of the output of a nucleic acid sequencing assay

Schema representation
Parents
Data Processingc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has quality control metricop
0 .. * Quality Control Metricc
has codeop
1 .. 1 Yes
has inputop
1 .. 1 Data Filec
has administrative caseop
0 .. * Administrative Casec
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has softwareop
0 .. 1 Softwarec
has outputop
1 .. * Data Filec
has reference sequenceop
0 .. 1 Reference Sequencec
has data providerop
1 .. 1 Data Providerc
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has predecessorop
0 .. * Data Processingc or Assayc
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
Restrictions
has codeop : descendants of the given classes are allowed

edam:operation_2945c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: EDAM or other

Sequencing Assay c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SequencingAssay
Description

an assay that exploits a sequencer as the instrument to generate results

Schema representation
Meaning binding
(Equivalent-classes)
efo:EFO_0003740c
Parents
Assayc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has administrative caseop
0 .. * Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has standard operating procedureop
0 .. 1 Standard Operating Procedurec
has data providerop
1 .. 1 Data Providerc
has data fileop
0 .. * Data Filec
has predecessorop
0 .. * Sample Processingc
has sampleop
0 .. * Samplec
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has library preparationop
0 .. 1 Library Preparationc
has sequencing runop
0 .. * Sequencing Runc
has intended read lengthop
0 .. 1 Quantityc
has sequencing instrumentop
0 .. 1 Sequencing Instrumentc
has identifierdp
0 .. 1 xsd:stringc
has codeop
1 .. 1 Yes
has intended read depthop
0 .. 1 Quantityc
Restrictions
has codeop : descendants of the given classes are allowed

efo:EFO_0001455c obi:OBI_0000070c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: EFO, OBI or other

For sphn:hasSample, instances of sphn:TumorSpecimen, sphn:Isolate are not allowed

For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed

Sequencing Instrument c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SequencingInstrument
Description

A sequencing instrument that is used in a sequencing assay

Schema representation
Meaning binding
(Equivalent-classes)
efo:EFO_0000548c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
has data providerop
1 .. 1 Data Providerc
Restrictions
has codeop : descendants of the given classes are allowed

obi:OBI_0400103c efo:EFO_0003739c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: OBI, EFO or other

Used in
(In the range of)
has sequencing instrumentop

Sequencing Run c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SequencingRun
Description

the valid and completed operation of a high-throughput sequencing instrument associated with a sequencing assay

Schema representation
Meaning binding
(Equivalent-classes)
obi:NCIT_C148088c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has mean read depthop
0 .. 1 Quantityc
has average insert sizeop
0 .. 1 Quantityc
has quality control metricop
1 .. * Quality Control Metricc
has identifierdp
0 .. 1 xsd:stringc
has read countop
0 .. 1 Quantityc
has datetimedp
0 .. 1 xsd:dateTimec
has data fileop
1 .. * Data Filec
has data providerop
1 .. 1 Data Providerc
has average read lengthop
0 .. 1 Quantityc
Restrictions None
Notes

For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed

Used in
(In the range of)
has sequencing runop

Single Nucleotide Variation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SingleNucleotideVariation
Description

single nucleotide change in a DNA sequence at a specific location

Schema representation
Meaning binding
(Equivalent-classes)
SO 0001483 | SNV |c
Parents
Genetic Variationc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has genomic positionop
0 .. 1 Genomic Positionc
has chromosomal locationop
0 .. 1 Chromosomal Locationc
has alternate alleledp
1 .. 1 xsd:stringc
has reference alleledp
1 .. 1 xsd:stringc
Restrictions None

Software c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Software
Description

Set of procedures and instructions in a data processing system

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 706689003 | Application program software (physical object) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has versiondp
1 .. 1 xsd:stringc
has uniform resource locatordp
0 .. 1 xsd:stringc
has descriptiondp
0 .. 1 xsd:stringc
has data providerop
1 .. 1 Data Providerc
has namedp
1 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has softwareop

Source Data c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SourceData
Description

raw data that has not been processed for meaningful use

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Codec or Terminologyc
has string valuedp
0 .. 1 xsd:stringc
has source systemop
1 .. * Source Systemc
Restrictions None
Used in
(In the range of)
has source dataop

Source System c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SourceSystem
Description

electronic system the data has been retrieved from

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has categoryop
0 .. 1 Source System categoryc
has primary systemop
0 .. 1 Healthcare Primary Information Systemc
has purposeop
0 .. 1 Source System purposec
has data providerop
1 .. 1 Data Providerc
has namedp
0 .. 1 xsd:stringc
Restrictions None
Used in
(In the range of)
has source systemop

Standard Operating Procedure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#StandardOperatingProcedure
Description

step-by-step instructions for carrying out routine operations imposed by the organization

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has descriptiondp
1 .. 1 xsd:stringc
has data providerop
1 .. 1 Data Providerc
has namedp
1 .. 1 xsd:stringc
has data fileop
0 .. 1 Data Filec
has versiondp
1 .. 1 xsd:stringc
Restrictions None
Notes

For sphn:hasDataFile, instances of sphn:TimeSeriesDataFile are not allowed

Used in
(In the range of)
has standard operating procedureop

Subject Pseudo Identifier c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SubjectPseudoIdentifier
Description

a coded unique identifier assigned by a data provider for a specific project to conceal the identity of an individual

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has identifierdp
1 .. 1 xsd:stringc
has data providerop
1 .. 1 Data Providerc
has shared identifierdp
0 .. * xsd:anyURIc
Restrictions None
Used in
(In the range of)
has subject pseudo identifierop

Substance c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Substance
Description

any matter of defined composition that has discrete existence, whose origin may be biological, mineral or chemical

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 105590001 | Substance (substance) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has generic namedp
0 .. 1 xsd:stringc
has codeop
0 .. 1 Yes
has source systemop
1 .. * Source Systemc
has quantityop
0 .. 1 Quantityc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 105590001 | Substance (substance) |c Codec Terminologyc

Notes

sphn:hasCode allowed coding system: SNOMED CT, ATC, NCI Thesaurus or other

Used in
(In the range of)
has chemical agentop
has substanceop
has inactive ingredientop
has active ingredientop

Swiss Socio Economic Position c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#SwissSocioEconomicPosition
Description

characterization or classification of the Swiss position in a neighbourhood of an individual that takes into account income, education, occupation, and housing conditions

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has valuedp
0 .. 1 Yes
has distanceop
0 .. 1 Yes
has versiondp
0 .. 1 xsd:stringc
Restrictions
has valuedp : descendants of the given classes are not allowed

xsd:doublec

has distanceop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:mc

Used in
(In the range of)
has swiss socio economic positionop

Terminology c# Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Terminology
Description

Terminology class for grouping external resources used in the SPHN project

Parents
SPHN Conceptc
Children
(Sub-classes)
sphn-genepio:GENEPIOc
sphn-obi:OBIc
sphn-loinc:LOINCc
sphn-edam:EDAMc
icd-10-gm:ICD-10-GMc
sphn-atc:ATCc
CHOP CHOP | CHOP |c
sphn-ordo:ORDOc
SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c
sphn-so:SOc
sphn-hgnc:HGNCc
ucum:UCUMc
sphn-efo:EFOc
sphn-eco:ECOc
sphn-geno:GENOc
Used in
(In the range of)
has reason to stop codeop
has circumstance codeop
has delivery mode codeop
has output codeop
has staining method codeop
has reaction type codeop
has status codeop
has regularity codeop
has verification status codeop
has start cytoband codeop
has zygosity codeop
has kit codeop
has condition codeop
has certainty codeop
has product codeop
has acquistion codeop
has mode codeop
has allele origin codeop
has degree codeop
has end cytoband codeop
has manifestation codeop
has type codeop
has administration route codeop
has institution codeop
has graft type codeop
has method codeop
has severity codeop
has cell count estimate codeop
has staining result codeop
has target enrichment kit codeop
has relative temporality codeop
has codeop
has route codeop
has agent codeop
has material type codeop
has format codeop

Therapeutic Area c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TherapeuticArea
Description

professional health care specialization

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 394658006 | Clinical specialty (qualifier value) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has source systemop
1 .. * Source Systemc
has specialty nameop
1 .. 1 Therapeutic Area specialty namec
Restrictions None
Used in
(In the range of)
has therapeutic areaop

Time Pattern c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TimePattern
Description

type of time period during which a treatment was given or an assessment was performed; this can be single time points or a continuous event

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 272103003 | Time patterns (qualifier value) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
1 .. 1 Yes
Restrictions
has type codeop : descendants of the given classes are not allowed

SNOMED 255238004 | Continuous (qualifier value) |c SNOMED 7087005 | Intermittent (qualifier value) |c SNOMED 385432009 | Not applicable (qualifier value) |c

Used in
(In the range of)
has time patternop

Time Series Data File c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TimeSeriesDataFile
Description

electronic resource that contains all the results related to a measurement as time series

Schema representation
Parents
Data Filec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has uniform resource identifierdp
0 .. 1 xsd:stringc
has creation datetimedp
0 .. 1 xsd:dateTimec
has encodingop
1 .. 1 Data File encodingc
has data providerop
1 .. 1 Data Providerc
has entry countop
1 .. 1 Yes
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has hashop
0 .. 1 Hashc
has namedp
0 .. 1 xsd:stringc
has format codeop
0 .. 1 Yes
has source systemop
1 .. * Source Systemc
Restrictions
has entry countop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:cblnbcbrc

has format codeop : descendants of the given classes are allowed

edam:format_1915c

Used in
(In the range of)
has data fileop

Tobacco Exposure c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TobaccoExposure
Description

episode of exposure of an individual to tobacco in various forms

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 229819007 | Tobacco use and exposure (observable entity) |c
Parents
Exposurec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has route codeop
0 .. * Yes
has data providerop
1 .. 1 Data Providerc
has agent codeop
0 .. 1 Yes
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has quantityop
0 .. 1 Yes
has end datetimedp
0 .. 1 xsd:dateTimec
has durationop
0 .. 1 Yes
has degree codeop
0 .. 1 Yes
has type codeop
0 .. 1 Yes
has administrative caseop
0 .. 1 Administrative Casec
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
Restrictions
has route codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

has agent codeop : descendants of the given classes are allowed

SNOMED 39953003 | Tobacco (substance) |c

has quantityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:ac

has durationop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:ac

has degree codeop : descendants of the given classes are not allowed

SNOMED 62482003 | Low (qualifier value) |c SNOMED 1255665007 | Moderate (qualifier value) |c SNOMED 75540009 | High (qualifier value) |c

has type codeop : descendants of the given classes are not allowed

SNOMED 702979003 | Never used tobacco (finding) |c SNOMED 43381005 | Passive smoker (finding) |c SNOMED 77176002 | Smoker (finding) |c SNOMED 8517006 | Ex-smoker (finding) |c SNOMED 228494002 | Snuff user (finding) |c SNOMED 228493008 | Ex-snuff user (finding) |c SNOMED 81703003 | Chews tobacco (finding) |c SNOMED 228513009 | Ex-tobacco chewer (finding) |c SNOMED 722499006 | Electronic cigarette user (finding) |c SNOMED 35361000087100 | Ex-electronic cigarette user (finding) |c

Transcript c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Transcript
Description

RNA molecules that are made from a DNA template

Schema representation
Meaning binding
(Equivalent-classes)
SO 0000673 | transcript |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has organismop
0 .. 1 Organismc
has proteinop
0 .. 1 Proteinc
has codeop
1 .. 1 Codec or Terminologyc
Restrictions None
Notes

sphn:hasCode allowed coding system: Ensembl or other

Used in
(In the range of)
has transcriptop

Transplant c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Transplant
Description

transplanted organ or tissue from self or donor, including, e.g., kidney graft or bone marrow fluid

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 24486003 | Structure of transplant (body structure) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
has graft type codeop
0 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 414265000 | Fluid containing hemopoietic stem cells (substance) |c SNOMED 260667007 | Graft (substance) |c

has graft type codeop : descendants of the given classes are not allowed

SNOMED 15879007 | Autograft (substance) |c SNOMED 7970006 | Allograft (substance) |c

Used in
(In the range of)
has transplantop

Transplant Presence c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TransplantPresence
Description

presence of a transplanted organ or tissue such as, e.g., a kidney graft

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 737294004 | Transplant present (finding) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has body siteop
0 .. 1 Body Sitec
has end datetimedp
0 .. 1 xsd:dateTimec
has transplantop
1 .. 1 Transplantc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has start datetimedp
0 .. 1 xsd:dateTimec
has source systemop
1 .. * Source Systemc
has record datetimedp
0 .. 1 xsd:dateTimec
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Tumor Grade Assessment c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessment
Description

grading system used to assess the differentiation of the tumor cells based on histology

Schema representation
Meaning binding
(Equivalent-classes)
LOINC 21858-6 | Grade Cancer |c
SNOMED 277457005 | Histological grading systems (staging scale) |c
Parents
Assessmentc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has namedp
0 .. 1 xsd:stringc
has resultop
0 .. 1 Tumor Grade Assessment Resultc
has componentop
0 .. * Assessment Componentc
has codeop
0 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 277457005 | Histological grading systems (staging scale) |c

Used in
(In the range of)
has assessmentop

Tumor Grade Assessment Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentEvent
Description

evaluation of the tumor grade at a given time, which takes into account a predefined grading system

Schema representation
Parents
Assessment Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has assessmentop
1 .. 1 Tumor Grade Assessmentc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Tumor Grade Assessment Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TumorGradeAssessmentResult
Description

outcome of a tumor grade assessment

Schema representation
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has string valuedp
0 .. 1 xsd:stringc
has quantityop
0 .. 1 Quantityc
has codeop
0 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

Used in
(In the range of)
has resultop

Tumor Specimen c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TumorSpecimen
Description

tumor specimen, volume and fixation method used

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 258435002 | Tumor tissue specimen (specimen) |c
Parents
Samplec
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has body siteop
0 .. 1 Body Sitec
has tumor purityop
0 .. 1 Yes
has primary containerop
0 .. 1 Sample primary containerc
has fixation typeop
0 .. 1 Sample fixation typec
has identifierdp
0 .. * xsd:stringc
has administrative caseop
0 .. 1 Administrative Casec
has data providerop
1 .. 1 Data Providerc
has collection datetimedp
1 .. 1 xsd:dateTimec
has material type codeop
0 .. * Yes
has source systemop
1 .. * Source Systemc
has shared identifierdp
0 .. * xsd:anyURIc
Restrictions
has tumor purityop / has unitop / has codeop : descendants of the given classes are not allowed

ucum:percentc

has material type codeop : descendants of the given classes are allowed

SNOMED 123038009 | Specimen (specimen) |c

Tumor Stage Assessment c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessment
Description

staging system used to assess the spread of the oncology disease

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 254292007 | Tumor staging (tumor staging) |c
Parents
Assessmentc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has componentop
0 .. * Assessment Componentc
has codeop
0 .. 1 Yes
has namedp
0 .. 1 xsd:stringc
has resultop
0 .. 1 Tumor Stage Assessment Resultc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 254292007 | Tumor staging (tumor staging) |c

Used in
(In the range of)
has assessmentop

Tumor Stage Assessment Event c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentEvent
Description

evaluation of the tumor stage at a given time, which takes into account a predefined staging system

Schema representation
Parents
Assessment Eventc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has performerop
0 .. 1 Performerc
has assessmentop
1 .. 1 Tumor Stage Assessmentc
has administrative caseop
0 .. 1 Administrative Casec
has source systemop
1 .. * Source Systemc
has datetimedp
1 .. 1 xsd:dateTimec
has data providerop
1 .. 1 Data Providerc
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
Restrictions None

Tumor Stage Assessment Result c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#TumorStageAssessmentResult
Description

outcome of a tumor stage assessment

Schema representation
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
0 .. 1 Yes
has string valuedp
0 .. 1 xsd:stringc
has quantityop
0 .. 1 Quantityc
Restrictions
has codeop : descendants of the given classes are allowed

SNOMED 138875005 | SNOMED CT Concept (SNOMED RT+CTV3) |c

Used in
(In the range of)
has resultop

Unit c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Unit
Description

unit of measurement

Schema representation
Meaning binding
(Equivalent-classes)
SNOMED 767524001 | Unit of measure (qualifier value) |c
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has codeop
1 .. 1 Yes
Restrictions
has codeop : descendants of the given classes are not allowed

ucum:UCUMc

Used in
(In the range of)
has unitop

Variant Descriptor c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#VariantDescriptor
Description

human-readable description of the variant

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has type codeop
0 .. 1 Yes
has administrative caseop
0 .. * Administrative Casec
has source systemop
1 .. * Source Systemc
has data providerop
1 .. * Data Providerc
has geneop
0 .. 1 Genec
has subject pseudo identifierop
0 .. * Subject Pseudo Identifierc
has zygosity codeop
0 .. 1 Yes
has notationop
0 .. * Variant Notationc
has genetic variationop
0 .. 1 Genetic Variationc
has allele origin codeop
0 .. 1 Yes
has codeop
0 .. 1 Codec or Terminologyc
Restrictions
has type codeop : descendants of the given classes are allowed

SO 0001059 | sequence_alteration |c

has zygosity codeop : descendants of the given classes are allowed

GENO 0000133 | zygosity |c

has allele origin codeop : descendants of the given classes are allowed

GENO 0000877 | allele origin |c

Notes

sphn:hasCode allowed coding system: ClinVar, RefSNP or other

Variant Notation c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#VariantNotation
Description

description of the variant using a specific nomenclature

Schema representation
Parents
SPHN Conceptc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has coding system and versiondp
1 .. 1 xsd:stringc
has valuedp
1 .. 1 Yes
Restrictions
has valuedp : descendants of the given classes are not allowed

xsd:stringc

Used in
(In the range of)
has notationop

Vital Status c # Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#VitalStatus
Description

state or condition of being living or deceased

Schema representation
Parents
Resultc
Property
(In the domain of)
Cardinality Class or Datatype Restriction
has subject pseudo identifierop
1 .. 1 Subject Pseudo Identifierc
has codeop
0 .. 1 Yes
has deathop
0 .. 1 Deathc
has data providerop
1 .. 1 Data Providerc
has source systemop
1 .. * Source Systemc
Restrictions
has codeop : descendants of the given classes are not allowed

SNOMED 438949009 | Alive (finding) |c SNOMED 399307001 | Lost to follow-up (finding) |c

Used in
(In the range of)
has resultop

Deprecated Classes

Administrative Genderc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#AdministrativeGender
Description

Administrative Gender

Parents
Deprecatedc

Biosamplec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#Biosample
Description

Biosample

Parents
Deprecatedc

Catheterc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#Catheter
Description

Catheter

Parents
Deprecatedc

Central Venous Pressurec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#CentralVenousPressure
Description

Central Venous Pressure

Parents
Deprecatedc

Circumference Measurec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#CircumferenceMeasure
Description

Circumference Measure

Parents
Deprecatedc

Data Provider Institutec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#DataProviderInstitute
Description

Data Provider Institute

Parents
Deprecatedc

Death Statusc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#DeathStatus
Description

Death Status

Parents
Deprecatedc

Diagnostic Radiologic Examinationc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#DiagnosticRadiologicExamination
Description

Diagnostic Radiologic Examination

Parents
Deprecatedc

FOPH Diagnosisc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#FOPHDiagnosis
Description

FOPH Diagnosis

Parents
Deprecatedc

FOPH Procedurec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#FOPHProcedure
Description

FOPH Procedure

Parents
Deprecatedc

ICD-O Diagnosisc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#ICDODiagnosis
Description

ICD-O Diagnosis

Parents
Deprecatedc

Measurement Methodc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#MeasurementMethod
Description

Measurement Method

Parents
Deprecatedc

Referencec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#Reference
Description

Reference

Parents
Deprecatedc

Simple Scorec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#SimpleScore
Description

Simple Score

Parents
Deprecatedc

Systemic Arterial Blood Pressurec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#SystemicArterialBloodPressure
Description

Systemic Arterial Blood Pressure

Parents
Deprecatedc

TNM Classificationc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#TNMClassification
Description

TNM Classification

Parents
Deprecatedc

Tumor Gradec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#TumorGrade
Description

Tumor Grade

Parents
Deprecatedc

Tumor Stagec # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-ontology/sphn#TumorStage
Description

Tumor Stage

Parents
Deprecatedc

Deprecatedc # Deprecated Classes

URI https://biomedit.ch/rdf/sphn-schema/sphn#Deprecated
Description

Deprecated classes of SPHN that existed in the previous version

Children
(Sub-classes)
Referencec
Measurement Methodc
Catheterc
Simple Scorec
Data Provider Institutec
Diagnostic Radiologic Examinationc
Administrative Genderc
Central Venous Pressurec
Circumference Measurec
Tumor Gradec
Biosamplec
ICD-O Diagnosisc
FOPH Diagnosisc
Death Statusc
TNM Classificationc
Tumor Stagec
FOPH Procedurec
Systemic Arterial Blood Pressurec

Valuesets

Adverse Event consequencesc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent_consequences
Description

consequences of the concept

Parents
Value Setc
Value set members
(Individuals)
Temporarily Serious Impact / Medically Important
None Of The Consequences Mentioned
Death
Hospitalisation Or Prolongation
Congenital Abnormality
Permanent Damage Or Disability
Life-Threatening

Adverse Event outcomec # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#AdverseEvent_outcome
Description

result or effect of an action, situation, or event of the concept

Parents
Value Setc
Value set members
(Individuals)
Recovering With Sequelae
Fatal
Recovering
Recovered
Not Recovered

Billed Diagnosis rankc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#BilledDiagnosis_rank
Description

specifies the level of the concept

Parents
Value Setc
Value set members
(Individuals)
Principal
Secondary
Complementary

Billed Procedure rankc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#BilledProcedure_rank
Description

specifies the level of the concept

Parents
Value Setc
Value set members
(Individuals)
Principal
Supplementary

Body Surface Area calculation methodc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#BodySurfaceArea_calculationMethod
Description

formula or method for calculating the concept

Parents
Value Setc
Value set members
(Individuals)
Du Bois
Mosteller
Other

Comparatorc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#Comparator
Description

qualifier describing whether the value is the precise one or not

Parents
Value Setc
Value set members
(Individuals)
>
<
<=
>=

Data File encodingc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataFile_encoding
Description

encoding of the concept

Parents
Value Setc
Value set members
(Individuals)
UTF-8
ASCII
UTF-16
ISO-8859-1

Data Provider categoryc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#DataProvider_category
Description

category associated to the concept

Parents
Value Setc
Value set members
(Individuals)
Federal Office
Company
Hospital
Service Provider
Health Insurance
Pharmacy
University
Research Organization
External Laboratory
Private Practice

Genomic Position coordinate conventionc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#GenomicPosition_coordinateConvention
Description

convention used for the interpretation of coordinates used in the concept

Parents
Value Setc
Value set members
(Individuals)
Inter-Residue Coordinates
Residue Coordinates

Hash algorithmc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#Hash_algorithm
Description

algorithm applied to the concept

Parents
Value Setc
Value set members
(Individuals)
MD5
SHA-256
SHA-512

Insurance Status coverage typec # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#InsuranceStatus_coverageType
Description

coverage type of the concept

Parents
Value Setc
Value set members
(Individuals)
Semi-Private
None
Other
General
Foreign
Private

Microbiology Microscopy Result cell morphologyc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult_cellMorphology
Description

cell morphology associated to the concept

Parents
Value Setc
Value set members
(Individuals)
Spiral
Other
Rod-Shaped
Filamentous
Round
Ovoid
Elongated
Curved-Rod-Shaped

Microbiology Microscopy Result cell organizationc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#MicrobiologyMicroscopyResult_cellOrganization
Description

cell organization associated to the concept

Parents
Value Setc
Value set members
(Individuals)
Multicellular
Unicellular
Entire Cell

Sample fixation typec # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#Sample_fixationType
Description

fixation or stabilization type

Parents
Value Setc
Value set members
(Individuals)
RNA Later
Nonaldehyde With Acetic Acid
Snap Freezing
Other
Nonbuffered Formalin
Allprotect ® Tissue Reagent
PAXgene Tissue
Aldehyde Based
Nonaldehyde Based Without Acetic Acid
Optimum Cutting Temperature Medium
Neutral Buffered Formalin
Heat Stabilization
Alcohol Based
Vacuum Technology Stabilization

Sample primary containerc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#Sample_primaryContainer
Description

type of primary container of the concept

Parents
Value Setc
Value set members
(Individuals)
Serum Separator Tube With Clot Activator
Sodium Fluoride/Potassium Oxalate
Hirudin
Lithium Heparin
Protease Inhibitors
Citrate Phosphate Dextrose
PAXgene® Bone Marrow RNA
Sodium Heparin
PAXgene® Blood DNA
Oragene Collection Container Or Equivalent
Potassium EDTA
Trace Elements Tube
Other
Aldehyde-Based Stabilizer For CTCs
EDTA And Gel
Glass
Lithium Heparin And Gel
Cell Preparation Tube® Heparin
Tempus® Tube
Sodium EDTA
Serum Tube Without Clot Activator
Stool Collection Container With DNA Stabilizer
Acid Citrate Dextrose
Non-Aldehyde-Based Stabilizer For Cell-Free Nucleic Acids
Polyethylene Tube Sterile
Cell Preparation Tube® Citrate
Polypropylene Tube Sterile
S8820 Protease Inhibitor Tablets Or Equivalent
Chemical Additives / Stabilizers
PAXgene® Blood RNA+
Sodium Citrate
Lithium Heparin And Rubber Plug
RNA Later
Physical Filtration System

Semantic Mapping purposec # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#SemanticMapping_purpose
Description

objective of the concept

Parents
Value Setc
Value set members
(Individuals)
Research
Quality Control
Patient Care
Billing

Source System categoryc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#SourceSystem_category
Description

category associated to the concept

Parents
Value Setc
Value set members
(Individuals)
Data Repository
Clinical Registry
Healthcare Information System
Biobank
Case Report Form
Clinical Data Platform
Cohort
Research Laboratory
OMICS Facility

Source System purposec # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#SourceSystem_purpose
Description

objective of the concept

Parents
Value Setc
Value set members
(Individuals)
Patient Care
Quality Control
Billing
Research

Therapeutic Area specialty namec # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#TherapeuticArea_specialtyName
Description

name of professional health care specialization

Parents
Value Setc
Value set members
(Individuals)
Neuropsychology
Vascular Surgery
Visceral Medicine
Physical Medicine And Rehabilitation
Child And Adolescent Psychology
Nephrology
Medical Oncology
Clinical Psychology
Orthopaedic Surgery And Traumatology Of The Locomotor Apparatus
Neurosurgery
Child And Adolescent Psychiatry And Psychotherapy
Intensive Care Medicine
Anaesthesiology
Forensic Medicine
Internal Medicine
Clinical Pharmacology And Toxicology
Neurology
General Internal Medicine
Haematology
Pneumology
Oral And Maxillofacial Surgery
Other
Cardiac And Thoracic Vascular Surgery
Infectology
Paediatrics
Allergology And Clinical Immunology
Geriatric Medicine
Addiction Medicine
Tropical And Travel Medicine
Dermatology And Venereology
Rheumatology
Medical Genetics
Pathology
Community Pharmacy
Nuclear Medicine
Paediatric Surgery
General Medicine
Ophthalmology
Psychotherapy
Prevention And Public Health
Gynaecology And Obstetrics
Orthodontics
Chiropractic Specialist
Endocrinology And Diabetology
Periodontics
Surgery
Angiology
Plastic, Reconstructive And Aesthetic Surgery
Occupational Medicine
General Medical Practitioner
Cardiology
Hospital Pharmacy
Health Psychology
Oral Surgery
Otorhinolaryngology
Psychiatry And Psychotherapy
Urology
Radiology
Radio-Oncology And Radiotherapy
Gastroenterology
Pharmaceutical Medicine
Reconstructive Dentistry
Hand Surgery
Thoracic Surgery

Value Setc # Valuesets

URI https://biomedit.ch/rdf/sphn-schema/sphn#ValueSet
Description

List of value sets provided by SPHN

Parents
SPHN Conceptc
Children
(Sub-classes)
Microbiology Microscopy Result cell organizationc
Insurance Status coverage typec
Adverse Event outcomec
Semantic Mapping purposec
Data Provider categoryc
Comparatorc
Data File encodingc
Genomic Position coordinate conventionc
Sample primary containerc
Source System categoryc
Sample fixation typec
Billed Diagnosis rankc
Body Surface Area calculation methodc
Hash algorithmc
Billed Procedure rankc
Adverse Event consequencesc
Microbiology Microscopy Result cell morphologyc
Source System purposec
Therapeutic Area specialty namec

Object Properties

has data provider instituteop # OPs

URI https://biomedit.ch/rdf/sphn-ontology/sphn#hasDataProviderInstitute
Description

has data provider institute

SPHN attribute objectop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#SPHNAttributeObject
Description

SPHN object attribute defined by the dataset

has acquistion codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAcquistionCode
Description

coded mode of acquisition of the concept

Super-properties has codeop
Domain(s) Nationalityc
Range Terminologyc Codec

has active ingredientop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasActiveIngredient
Description

active component of the concept

Super-properties SPHN attribute objectop
Domain(s) Drugc
Range Substancec

has administration route codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAdministrationRouteCode
Description

coded information specifying the route of administration

Super-properties has route codeop
Domain(s) Drug Administration Eventc Drug Prescriptionc
Range Terminologyc Codec

has administrative caseop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAdministrativeCase
Description

link to an interaction between an individual and healthcare provider(s) via an administrative case identifier for the purpose of providing healthcare service(s) or assessing the health status of an individual

Super-properties SPHN attribute objectop
Domain(s) Birthc Variant Descriptorc Antimicrobial Susceptibility Lab Test Eventc Cardiac Indexc Sequencing Assayc Oncology Surgeryc Drug Prescriptionc Measurementc Microorganism Identification Lab Test Eventc Oxygen Saturation Measurementc Heart Rate Measurementc Oncology Diagnosisc Isolatec Nutrition Intakec Healthcare Encounterc Microbiology Microscopy Lab Test Eventc Microbiology Biomolecule Presence Lab Test Eventc Library Preparationc Samplec Body Height Measurementc Body Temperature Measurementc Access Device Presencec Sequencing Analysisc Billed Procedurec Gestational Age At Birthc Tumor Stage Assessment Eventc Organ Supportc Fluid Input Outputc Transplant Presencec Blood Pressure Measurementc Data Processingc Insurance Statusc Inhaled Oxygen Concentrationc Tumor Specimenc Assayc Problem Conditionc Allergy Episodec Deathc Tumor Grade Assessment Eventc Electrocardiographic Procedurec Nursing Diagnosisc Assessment Eventc Adverse Eventc Biobanksamplec Drug Administration Eventc Sample Processingc Radiotherapy Procedurec Lab Test Eventc Excluded Disorderc Body Surface Areac Cardiac Output Measurementc Circumference Measurementc Body Weight Measurementc Resuscitation Directivec Exposurec Implant Presencec Fluid Balancec Tobacco Exposurec Medical Procedurec Body Positionc Respiratory Rate Measurementc Body Mass Indexc Diagnosisc Billed Diagnosisc Imaging Procedurec
Range Administrative Casec

has affected genomic featureop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAffectedGenomicFeature
Description

genomic features affected by the concept

Super-properties SPHN attribute objectop
Domain(s) Copy Number Variationc
Range Genec

has agent codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAgentCode
Description

coded information specifying an active power or cause (as principle, substance, physical or biological factor, etc.) that produces a specific effect

Super-properties has codeop
Domain(s) Exposurec Tobacco Exposurec
Range Codec Terminologyc

has algorithmop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAlgorithm
Description

algorithm applied to the concept

Super-properties SPHN attribute objectop
Domain(s) Hashc
Range SPHN Conceptc

has allele origin codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAlleleOriginCode
Description

coded information specifying the origin of the allele associated to the concept

Super-properties has codeop
Domain(s) Variant Descriptorc
Range Codec Terminologyc

has allergenop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAllergen
Description

any substance, product or physical force producing immediate hypersensitivity responsible for the concept

Super-properties SPHN attribute objectop
Domain(s) Allergy Episodec Allergyc
Range Allergenc

has articleop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasArticle
Description

commercial identifier of the concept

Super-properties SPHN attribute objectop
Domain(s) Drugc
Range Drug Articlec

has assessmentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAssessment
Description

evaluation tool associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Tumor Stage Assessment Eventc Tumor Grade Assessment Eventc Assessment Eventc
Range Assessmentc Tumor Stage Assessmentc Tumor Grade Assessmentc

has associated countryop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAssociatedCountry
Description

country associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Nationalityc
Range Countryc

has average insert sizeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAverageInsertSize
Description

average insert size associated to the concept

Super-properties has quantityop
Domain(s) Sequencing Runc
Range Quantityc

has average read lengthop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAverageReadLength
Description

average read length associated to the concept

Super-properties has quantityop
Domain(s) Sequencing Runc
Range Quantityc

has body siteop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasBodySite
Description

anatomical site or structure associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Transplant Presencec Tumor Specimenc Electrocardiographic Procedurec Radiotherapy Procedurec Imaging Procedurec Circumference Measurementc Implant Presencec Medical Procedurec Oncology Diagnosisc Isolatec Samplec Oncology Surgeryc Oxygen Saturation Measurementc Heart Rate Measurementc Blood Pressure Measurementc Allergy Episodec Body Temperature Measurementc Billed Procedurec Organ Supportc
Range Body Sitec

has calculation methodop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCalculationMethod
Description

formula or method for calculating the concept

Super-properties SPHN attribute objectop
Domain(s) Body Surface Areac
Range SPHN Conceptc

has care handlingop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCareHandling
Description

describes the relationship between the patient and care provider institute

Super-properties SPHN attribute objectop
Domain(s) Administrative Casec
Range Care Handlingc

has categoryop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCategory
Description

category associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Source Systemc Data Providerc
Range SPHN Conceptc

has cell count estimate codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCellCountEstimateCode
Description

code of the estimated cell count associated to the concept

Super-properties has codeop
Domain(s) Microbiology Microscopy Resultc
Range Codec Terminologyc

has cell morphologyop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCellMorphology
Description

cell morphology associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Microbiology Microscopy Resultc
Range SPHN Conceptc

has cell organizationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCellOrganization
Description

cell organization associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Microbiology Microscopy Resultc
Range SPHN Conceptc

has certainty codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCertaintyCode
Description

coded information specifying the degree of certainty associated to the concept

Super-properties has codeop
Domain(s) Allergy Episodec
Range Terminologyc Codec

has chemical agentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasChemicalAgent
Description

chemical agent associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Antimicrobial Susceptibility Lab Testc
Range Substancec Drugc

has chromosomal locationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasChromosomalLocation
Description

chromosomal location of the concept

Super-properties SPHN attribute objectop
Domain(s) Genetic Variationc Single Nucleotide Variationc Copy Number Variationc Genomic Insertionc Genomic Deletionc
Range Chromosomal Locationc

has chromosomeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasChromosome
Description

chromosome associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Chromosomal Locationc
Range Chromosomec

has circumstance codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCircumstanceCode
Description

coded information specifying the circumstance associated to the concept

Super-properties has codeop
Domain(s) Deathc
Range Terminologyc Codec

has codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCode
Description

coded information specifying the concept

Super-properties SPHN attribute objectop
Domain(s) Microorganism Identification Lab Testc Microbiology Biomolecule Presence Resultc Oncology Diagnosisc Allergenc Tumor Stage Assessment Resultc Lab Testc Organismc Library Preparationc Tumor Stage Assessmentc Assessmentc Oncology Surgeryc Lab Resultc Lateralityc Substancec Healthcare Primary Information Systemc Intentc Sequencing Analysisc Billed Procedurec Source Datac Microbiology Biomolecule Presence Lab Testc Data Processingc Performerc Reference Sequencec Assayc Vital Statusc Nursing Diagnosisc Follow Upc Adverse Eventc Transcriptc Microorganism Identification Resultc Countryc Organ Supportc Sample Processingc Antimicrobial Susceptibility Lab Testc Physiologic Statec Problem Conditionc Antimicrobial Susceptibility Resultc Civil Statusc Body Sitec Electrocardiographic Procedurec Excluded Disorderc Chromosomec Drug Articlec Transplantc Resuscitation Directivec Sequencing Instrumentc Microbiology Microscopy Lab Testc Assessment Resultc Reference Interpretation Resultc Radiotherapy Procedurec Medical Procedurec Tumor Grade Assessmentc Body Positionc Diagnosisc Billed Diagnosisc Imaging Procedurec Proteinc Genec Variant Descriptorc Assessment Componentc Sequencing Assayc Administrative Sexc Pharmaceutical Dose Formc Unitc Tumor Grade Assessment Resultc Quality Control Metricc
Range Codec Terminologyc

has comparatorop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasComparator
Description

qualifier describing imprecise values

Super-properties SPHN attribute objectop
Domain(s) Quantityc Birth Datec
Range SPHN Conceptc

has componentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasComponent
Description

part of the concept

Super-properties SPHN attribute objectop
Domain(s) Tumor Stage Assessmentc Assessmentc Tumor Grade Assessmentc
Range Assessment Componentc

has condition codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasConditionCode
Description

coded information specifying the condition associated to the concept

Super-properties has codeop
Domain(s) Deathc
Range Terminologyc Codec

has consequencesop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasConsequences
Description

consequences of the concept

Super-properties SPHN attribute objectop
Domain(s) Adverse Eventc
Range SPHN Conceptc

has coordinate conventionop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCoordinateConvention
Description

convention used for the interpretation of coordinates used in the concept

Super-properties SPHN attribute objectop
Domain(s) Genomic Positionc
Range SPHN Conceptc

has countryop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCountry
Description

country associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Home Addressc Birthc
Range Countryc

has coverage typeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCoverageType
Description

coverage type of the concept

Super-properties SPHN attribute objectop
Domain(s) Insurance Statusc
Range SPHN Conceptc

has current locationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCurrentLocation
Description

physical location where the individual received medical care

Super-properties has locationop
Domain(s) Healthcare Encounterc
Range Locationc

has data determinationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDataDetermination
Description

indicates how the value was obtained

Super-properties SPHN attribute objectop
Domain(s) Body Heightc Body Weightc Inhaled Oxygen Concentrationc Respiratory Ratec
Range Data Determinationc

has data fileop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDataFile
Description

data file associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Blood Pressurec Cardiac Outputc Heart Ratec Body Temperaturec Sequencing Assayc Standard Operating Procedurec Oxygen Saturationc Assayc Respiratory Ratec Gene Panelc Sequencing Runc Electrocardiogramc
Range Time Series Data Filec Data Filec

has data providerop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDataProvider
Description

link to the unique business identification number (UID) of the healthcare institute providing the data

Super-properties SPHN attribute objectop
Domain(s) Resuscitation Directivec Exposurec Administrative Sexc Implant Presencec Fluid Balancec Death Datec Time Series Data Filec Tobacco Exposurec Medical Procedurec Body Positionc Respiratory Rate Measurementc Body Mass Indexc Diagnosisc Billed Diagnosisc Imaging Procedurec Birthc Variant Descriptorc Antimicrobial Susceptibility Lab Test Eventc Cardiac Indexc Sequencing Assayc Oncology Surgeryc Drug Prescriptionc Measurementc Microorganism Identification Lab Test Eventc Oxygen Saturation Measurementc Reference Interpretationc Quality Control Metricc Heart Rate Measurementc Standard Operating Procedurec Oncology Diagnosisc Isolatec Nutrition Intakec Healthcare Encounterc Subject Pseudo Identifierc Data Filec Microbiology Microscopy Lab Test Eventc Microbiology Biomolecule Presence Lab Test Eventc Library Preparationc Samplec Body Height Measurementc Body Temperature Measurementc Access Device Presencec Healthcare Primary Information Systemc Sequencing Analysisc Billed Procedurec Gestational Age At Birthc Tumor Stage Assessment Eventc Organ Supportc Fluid Input Outputc Transplant Presencec Blood Pressure Measurementc Allergyc Data Processingc Insurance Statusc Inhaled Oxygen Concentrationc Tumor Specimenc Assayc Problem Conditionc Vital Statusc Allergy Episodec Deathc Tumor Grade Assessment Eventc Nursing Diagnosisc Follow Upc Interpretationc Home Addressc Assessment Eventc Adverse Eventc Consentc Data Releasec Semantic Mappingc Biobanksamplec Drug Administration Eventc Birth Datec Administrative Casec Sequencing Instrumentc Softwarec Sample Processingc Radiotherapy Procedurec Lab Test Eventc Sequencing Runc Electrocardiographic Procedurec Nationalityc Locationc Excluded Disorderc Body Surface Areac Cardiac Output Measurementc Source Systemc Circumference Measurementc Body Weight Measurementc
Range Data Providerc

has dateop De-id # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDate
Description

date of the concept

Super-properties SPHN attribute objectop
Domain(s) Birthc Deathc
Range Death Datec Birth Datec

has deathop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDeath
Description

death information specifying the concept

Super-properties SPHN attribute objectop
Domain(s) Vital Statusc
Range Deathc

has degree codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDegreeCode
Description

coded information specifying the degree of the concept

Super-properties has codeop
Domain(s) Exposurec Tobacco Exposurec
Range Terminologyc Codec

has delivery mode codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDeliveryModeCode
Description

mode of delivery during concept

Super-properties has codeop
Domain(s) Birthc
Range Terminologyc Codec

has departmentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDepartment
Description

department of the concept

Super-properties SPHN attribute objectop
Domain(s) Data Providerc
Range Departmentc

has diastolic pressureop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDiastolicPressure
Description

diastolic pressure of the concept

Super-properties has quantityop
Domain(s) Blood Pressurec
Range Quantityc

has discharge locationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDischargeLocation
Description

location where the individual went to when leaving the healthcare provider institute, e.g. nursing home

Super-properties has locationop
Domain(s) Administrative Casec
Range Locationc

has distanceop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDistance
Description

distance related to the concept

Super-properties has quantityop
Domain(s) Swiss Socio Economic Positionc
Range Quantityc

has drugop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDrug
Description

medication associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Drug Prescriptionc Drug Administration Eventc
Range Drugc

has durationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDuration
Description

elapsed time from start to end of the concept

Super-properties has quantityop
Domain(s) Allergy Episodec Drug Administration Eventc Exposurec Tobacco Exposurec
Range Quantityc

has encodingop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasEncoding
Description

encoding of the concept

Super-properties SPHN attribute objectop
Domain(s) Time Series Data Filec Data Filec
Range SPHN Conceptc

has end cytoband codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasEndCytobandCode
Description

coded information specifying the end cytoband of the concept

Super-properties has codeop
Domain(s) Chromosomal Locationc
Range Terminologyc Codec

has energy quantityop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasEnergyQuantity
Description

amount of energy of the concept

Super-properties has quantityop
Domain(s) Nutrition Intakec
Range Quantityc

has entry countop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasEntryCount
Description

count of entries in the concept

Super-properties has quantityop
Domain(s) Time Series Data Filec
Range Quantityc

has exposureop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasExposure
Description

exposure associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Allergy Episodec
Range Exposurec

has fixation typeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFixationType
Description

fixation or stabilization type

Super-properties SPHN attribute objectop
Domain(s) Tumor Specimenc Isolatec Samplec
Range SPHN Conceptc

has fluid input outputop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFluidInputOutput
Description

individual fluid input and output that form the concept

Super-properties SPHN attribute objectop
Domain(s) Fluid Balancec
Range Fluid Input Outputc

has focus geneop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFocusGene
Description

gene of focus associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Gene Panelc
Range Genec

has format codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFormatCode
Description

coded information specifying the format of the concept

Super-properties has codeop
Domain(s) Data Filec Time Series Data Filec
Range Codec Terminologyc

has fractions numberop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFractionsNumber
Description

number of fractions applied during an event

Super-properties has quantityop
Domain(s) Radiotherapy Procedurec
Range Quantityc

has frequencyop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFrequency
Description

number of events per unit of time

Super-properties has quantityop
Domain(s) Drug Prescriptionc
Range Quantityc

has geneop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGene
Description

specific gene(s) context where the concept occurs

Super-properties SPHN attribute objectop
Domain(s) Variant Descriptorc
Range Genec

has gene panelop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGenePanel
Description

gene panel associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Library Preparationc
Range Gene Panelc

has genetic variationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGeneticVariation
Description

concept described by its position and sequence change

Super-properties SPHN attribute objectop
Domain(s) Variant Descriptorc
Range Genetic Variationc

has genomic positionop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGenomicPosition
Description

genomic position of the concept

Super-properties SPHN attribute objectop
Domain(s) Genomic Deletionc Single Nucleotide Variationc Copy Number Variationc Genomic Insertionc Genetic Variationc
Range Genomic Positionc

has gestational ageop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGestationalAge
Description

gestational age associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Birthc
Range Gestational Age At Birthc

has graft type codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGraftTypeCode
Description

coded information specifying the type of graft of the concept

Super-properties has codeop
Domain(s) Transplantc
Range Codec Terminologyc

has hashop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasHash
Description

hash associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Time Series Data Filec Data Filec
Range Hashc

has inactive ingredientop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasInactiveIngredient
Description

inert ingredients or excipients, and generally have no pharmacological effect of the concept

Super-properties SPHN attribute objectop
Domain(s) Drugc
Range Substancec

has indication to startop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIndicationToStart
Description

indication to start the concept

Super-properties SPHN attribute objectop
Domain(s) Drug Prescriptionc
Range Diagnosisc

has inputop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasInput
Description

input associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Reference Interpretationc Library Preparationc Sequencing Analysisc Data Processingc Interpretationc Sample Processingc
Range Samplec Resultc SPHN Conceptc Data Filec

has insertion pointop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasInsertionPoint
Description

anatomical site of insertion

Super-properties has body siteop
Domain(s) Access Device Presencec
Range Body Sitec

has institution codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasInstitutionCode
Description

coded information specifying the institution of the concept

Super-properties has codeop
Domain(s) Data Providerc
Range Codec Terminologyc

has instrumentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasInstrument
Description

instrument used for the concept

Super-properties SPHN attribute objectop
Domain(s) Antimicrobial Susceptibility Lab Testc Microbiology Microscopy Lab Testc Microorganism Identification Lab Testc Lab Testc Microbiology Biomolecule Presence Lab Testc
Range Lab Analyzerc

has intended insert sizeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIntendedInsertSize
Description

intended insert size associated to the concept

Super-properties has quantityop
Domain(s) Library Preparationc
Range Quantityc

has intended read depthop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIntendedReadDepth
Description

intended read depth associated to the concept

Super-properties has quantityop
Domain(s) Sequencing Assayc
Range Quantityc

has intended read lengthop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIntendedReadLength
Description

intended read length associated to the concept

Super-properties has quantityop
Domain(s) Sequencing Assayc
Range Quantityc

has intentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIntent
Description

intention for the concept

Super-properties SPHN attribute objectop
Domain(s) Organ Supportc Electrocardiographic Procedurec Radiotherapy Procedurec Medical Procedurec Imaging Procedurec Drug Prescriptionc Oncology Surgeryc Billed Procedurec
Range Intentc

has kit codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasKitCode
Description

coded information specifying the kit associated to the concept

Super-properties has codeop
Domain(s) Library Preparationc
Range Terminologyc Codec

has lab testop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasLabTest
Description

lab test associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Microbiology Microscopy Lab Test Eventc Microbiology Biomolecule Presence Lab Test Eventc Lab Test Eventc Microorganism Identification Lab Test Eventc Antimicrobial Susceptibility Lab Test Eventc
Range Lab Testc Microbiology Biomolecule Presence Lab Testc Antimicrobial Susceptibility Lab Testc Microbiology Microscopy Lab Testc Microorganism Identification Lab Testc

has lateralityop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasLaterality
Description

localization with respect to the side of the body

Super-properties SPHN attribute objectop
Domain(s) Body Sitec
Range Lateralityc

has library preparationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasLibraryPreparation
Description

library preparation associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Sequencing Assayc
Range Library Preparationc

has locationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasLocation
Description

statement about a physical location

Super-properties SPHN attribute objectop
Range Locationc

has lower limitop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasLowerLimit
Description

lowest value of the concept

Super-properties has quantityop
Domain(s) Reference Rangec
Range Quantityc

has manifestation codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasManifestationCode
Description

coded information specifying the clinical symptom and/or sign that occurred during the specific concept

Super-properties has codeop
Domain(s) Allergy Episodec
Range Terminologyc Codec

has manufactured dose formop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasManufacturedDoseForm
Description

dose form presented in the manufactured item

Super-properties SPHN attribute objectop
Domain(s) Drug Articlec
Range Pharmaceutical Dose Formc

has material type codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasMaterialTypeCode
Description

coded information specifying the material type of the concept

Super-properties has codeop
Domain(s) Isolatec Samplec Tumor Specimenc
Range Codec Terminologyc

has mean pressureop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasMeanPressure
Description

mean pressure of the concept

Super-properties has quantityop
Domain(s) Blood Pressurec
Range Quantityc

has mean read depthop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasMeanReadDepth
Description

mean read depth associated to the concept

Super-properties has quantityop
Domain(s) Sequencing Runc
Range Quantityc

has medical deviceop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasMedicalDevice
Description

medical device associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Cardiac Output Measurementc Circumference Measurementc Body Weight Measurementc Implant Presencec Respiratory Rate Measurementc Birthc Measurementc Oxygen Saturation Measurementc Heart Rate Measurementc Body Height Measurementc Body Temperature Measurementc Access Device Presencec Blood Pressure Measurementc
Range Implantc Medical Devicec Access Devicec

has method codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasMethodCode
Description

coded information specifying the method of the concept

Super-properties has codeop
Domain(s) Oxygen Saturation Measurementc Heart Rate Measurementc Measurementc Body Height Measurementc Blood Pressure Measurementc Body Temperature Measurementc Cardiac Output Measurementc Data Determinationc Semantic Mappingc Body Weight Measurementc Respiratory Rate Measurementc Cardiac Indexc Circumference Measurementc
Range Codec Terminologyc

has mode codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasModeCode
Description

mode associated to the concept

Super-properties has codeop
Domain(s) Nutrition Intakec
Range Codec Terminologyc

has notationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasNotation
Description

description of the concept using a specific nomenclature or syntax

Super-properties SPHN attribute objectop
Domain(s) Variant Descriptorc
Range Variant Notationc

has number of leadsop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasNumberOfLeads
Description

number of leads used in the concept

Super-properties has quantityop
Domain(s) Electrocardiographic Procedurec
Range Quantityc

has numerical referenceop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasNumericalReference
Description

numerical reference associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Microorganism Identification Resultc Antimicrobial Susceptibility Resultc Microbiology Biomolecule Presence Resultc Microbiology Microscopy Resultc Lab Resultc
Range Reference Rangec Reference Valuec

has organismop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOrganism
Description

organism associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Transcriptc Microorganism Identification Resultc Proteinc Isolatec Genec
Range Organismc

has origin locationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOriginLocation
Description

physical location where the individual came from

Super-properties has locationop
Domain(s) Healthcare Encounterc Administrative Casec
Range Locationc

has outcomeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOutcome
Description

result or effect of an action, situation, or event of the concept

Super-properties SPHN attribute objectop
Domain(s) Adverse Eventc
Range SPHN Conceptc

has outputop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOutput
Description

output associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Reference Interpretationc Library Preparationc Sequencing Analysisc Data Processingc Sample Processingc Electrocardiographic Procedurec Interpretationc
Range Data Filec Samplec SPHN Conceptc Electrocardiogramc Reference Interpretation Resultc

has output codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOutputCode
Description

coded information specifying the output of the concept

Super-properties has codeop
Domain(s) Semantic Mappingc
Range Terminologyc Codec

has oxygen equipmentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOxygenEquipment
Description

type of device used for oxygen therapy, e.g. nasal cannula, Venturi mask

Super-properties SPHN attribute objectop
Domain(s) Inhaled Oxygen Concentrationc
Range Medical Devicec

has oxygen flow rateop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOxygenFlowRate
Description

quantity and duration of oxygen flow rate administration

Super-properties SPHN attribute objectop
Domain(s) Inhaled Oxygen Concentrationc
Range Drug Administration Eventc

has performerop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasPerformer
Description

person who performs or reports the concept

Super-properties SPHN attribute objectop
Domain(s) Measurementc Oxygen Saturation Measurementc Body Height Measurementc Heart Rate Measurementc Tumor Stage Assessment Eventc Blood Pressure Measurementc Body Temperature Measurementc Tumor Grade Assessment Eventc Assessment Eventc Cardiac Output Measurementc Circumference Measurementc Body Weight Measurementc Respiratory Rate Measurementc
Range Performerc

has predecessorop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasPredecessor
Description

process preceding this concept

Super-properties SPHN attribute objectop
Domain(s) Sequencing Assayc Library Preparationc Sequencing Analysisc Data Processingc Assayc Sample Processingc
Range Data Processingc Assayc Sample Processingc

has primary containerop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasPrimaryContainer
Description

type of primary container of the concept

Super-properties SPHN attribute objectop
Domain(s) Tumor Specimenc Isolatec Samplec
Range SPHN Conceptc

has primary systemop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasPrimarySystem
Description

primary system providing input to the concept

Super-properties SPHN attribute objectop
Domain(s) Source Systemc
Range Healthcare Primary Information Systemc

has product codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasProductCode
Description

coded information specifying the concept on the level of a commercial product

Super-properties has codeop
Domain(s) Access Devicec Lab Analyzerc Implantc Medical Devicec
Range Terminologyc Codec

has proteinop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasProtein
Description

protein product of the concept

Super-properties SPHN attribute objectop
Domain(s) Transcriptc Genec
Range Proteinc

has purposeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasPurpose
Description

objective of the concept

Super-properties SPHN attribute objectop
Domain(s) Semantic Mappingc Source Systemc
Range SPHN Conceptc

has quality control metricop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasQualityControlMetric
Description

quality control metric associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Library Preparationc Sequencing Analysisc Data Processingc Sample Processingc Sequencing Runc
Range Quality Control Metricc

has quantityop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasQuantity
Description

an amount or a number of the concept

Super-properties SPHN attribute objectop
Domain(s) Body Heightc Circumferencec Antimicrobial Susceptibility Resultc Body Surface Areac Agec Body Weightc Exposurec Fluid Balancec Assessment Resultc Tobacco Exposurec Heart Ratec Body Temperaturec Body Mass Indexc Cardiac Indexc Microbiology Microscopy Resultc Tumor Grade Assessment Resultc Quality Control Metricc Substancec Cardiac Outputc Microbiology Biomolecule Presence Resultc Drugc Tumor Stage Assessment Resultc Lab Resultc Reference Valuec Oxygen Saturationc Gestational Age At Birthc Inhaled Oxygen Concentrationc Respiratory Ratec
Range Quantityc

has radiation quantityop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasRadiationQuantity
Description

amount of radiation (value and unit) delivered or applied

Super-properties has quantityop
Domain(s) Radiotherapy Procedurec
Range Quantityc

has rankop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasRank
Description

specifies the level of the concept

Super-properties SPHN attribute objectop
Domain(s) Billed Procedurec Billed Diagnosisc
Range SPHN Conceptc

has reaction type codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasReactionTypeCode
Description

coded information specifying the type of reaction

Super-properties has codeop
Domain(s) Allergyc
Range Terminologyc Codec

has read countop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasReadCount
Description

ready count associated with to concept

Super-properties has quantityop
Domain(s) Sequencing Runc
Range Quantityc

has reason to stop codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasReasonToStopCode
Description

coded information indicating the reason to stop the concept

Super-properties has codeop
Domain(s) Drug Administration Eventc
Range Terminologyc Codec

has referenceop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasReference
Description

reference used to define the coordinates of the concept

Super-properties SPHN attribute objectop
Domain(s) Genomic Positionc
Range Reference Sequencec

has reference sequenceop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasReferenceSequence
Description

reference sequence used to define the coordinates of the concept

Super-properties SPHN attribute objectop
Domain(s) Sequencing Analysisc
Range Reference Sequencec

has regularity codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasRegularityCode
Description

coded information specifying the regularity of the concept

Super-properties has codeop
Domain(s) Heart Ratec
Range Terminologyc Codec

has relative temporality codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasRelativeTemporalityCode
Description

coded information describing when the concept occurred in relation to another event

Super-properties has codeop
Domain(s) Problem Conditionc
Range Codec Terminologyc

has resting pointop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasRestingPoint
Description

anatomical site of the end position

Super-properties has body siteop
Domain(s) Access Device Presencec
Range Body Sitec

has resultop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasResult
Description

evaluation outcome associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Antimicrobial Susceptibility Lab Testc Cardiac Output Measurementc Body Weight Measurementc Microbiology Microscopy Lab Testc Tumor Grade Assessmentc Respiratory Rate Measurementc Assessment Componentc Circumference Measurementc Measurementc Oxygen Saturation Measurementc Heart Rate Measurementc Microorganism Identification Lab Testc Lab Testc Tumor Stage Assessmentc Assessmentc Body Height Measurementc Blood Pressure Measurementc Microbiology Biomolecule Presence Lab Testc Body Temperature Measurementc Follow Upc
Range Microorganism Identification Resultc Body Heightc Circumferencec Blood Pressurec Body Weightc Tumor Grade Assessment Resultc Assessment Resultc Cardiac Outputc Heart Ratec Microbiology Biomolecule Presence Resultc Body Temperaturec Tumor Stage Assessment Resultc Microbiology Microscopy Resultc Lab Resultc Oxygen Saturationc Resultc Vital Statusc Antimicrobial Susceptibility Resultc Respiratory Ratec

has route codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasRouteCode
Description

coded information specifying the route of the concept

Super-properties has codeop
Domain(s) Tobacco Exposurec Exposurec
Range Codec Terminologyc

has sampleop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSample
Description

sample associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Assayc Lab Test Eventc Antimicrobial Susceptibility Lab Test Eventc Sequencing Assayc Microorganism Identification Lab Test Eventc Microbiology Microscopy Lab Test Eventc Microbiology Biomolecule Presence Lab Test Eventc Biobanksamplec
Range Isolatec Samplec

has sequence lengthop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSequenceLength
Description

sequence length of the concept

Super-properties has quantityop
Domain(s) Genomic Insertionc Genomic Deletionc
Range Quantityc

has sequencing instrumentop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSequencingInstrument
Description

device associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Sequencing Assayc
Range Sequencing Instrumentc

has sequencing runop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSequencingRun
Description

sequencing run associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Sequencing Assayc
Range Sequencing Runc

has severity codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSeverityCode
Description

coded information specifying the severity of the concept

Super-properties has codeop
Domain(s) Allergyc Allergy Episodec Adverse Eventc
Range Codec Terminologyc

has softwareop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSoftware
Description

software associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Lab Analyzerc Implantc Medical Devicec Sequencing Analysisc Data Processingc Access Devicec
Range Softwarec

has source dataop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSourceData
Description

source data associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Semantic Mappingc
Range Source Datac

has source systemop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSourceSystem
Description

link to a source system

Super-properties SPHN attribute objectop
Domain(s) Respiratory Rate Measurementc Diagnosisc Billed Diagnosisc Imaging Procedurec Birthc Variant Descriptorc Antimicrobial Susceptibility Lab Test Eventc Care Handlingc Sequencing Assayc Circumference Measurementc Drug Prescriptionc Microorganism Identification Lab Test Eventc Administrative Sexc Oxygen Saturation Measurementc Therapeutic Areac Medical Procedurec Oncology Diagnosisc Drugc Isolatec Body Mass Indexc Nutrition Intakec Healthcare Encounterc Cardiac Indexc Microbiology Microscopy Lab Test Eventc Samplec Oncology Surgeryc Measurementc Reference Interpretationc Body Height Measurementc Heart Rate Measurementc Substancec Billed Procedurec Source Datac Data Filec Tumor Stage Assessment Eventc Fluid Input Outputc Microbiology Biomolecule Presence Lab Test Eventc Library Preparationc Blood Pressure Measurementc Data Processingc Insurance Statusc Inhaled Oxygen Concentrationc Assayc Allergy Episodec Body Temperature Measurementc Deathc Access Device Presencec Tumor Grade Assessment Eventc Nursing Diagnosisc Sequencing Analysisc Follow Upc Interpretationc Home Addressc Assessment Eventc Adverse Eventc Consentc Biobanksamplec Drug Administration Eventc Gestational Age At Birthc Birth Datec Organ Supportc Transplant Presencec Administrative Casec Allergyc Sample Processingc Tumor Specimenc Problem Conditionc Vital Statusc Lab Test Eventc Electrocardiographic Procedurec Nationalityc Excluded Disorderc Body Surface Areac Cardiac Output Measurementc Agec Drug Articlec Semantic Mappingc Body Weight Measurementc Resuscitation Directivec Exposurec Implant Presencec Fluid Balancec Death Datec Radiotherapy Procedurec Time Series Data Filec Tobacco Exposurec Civil Statusc Body Positionc
Range Source Systemc

has specialty nameop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSpecialtyName
Description

name of professional health care specialization

Super-properties SPHN attribute objectop
Domain(s) Therapeutic Areac
Range SPHN Conceptc

has staining method codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStainingMethodCode
Description

coded information specifying the staining method associated to the concept

Super-properties has codeop
Domain(s) Microbiology Microscopy Lab Testc
Range Terminologyc Codec

has staining result codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStainingResultCode
Description

coded information specifying the staining result associated to the concept

Super-properties has codeop
Domain(s) Microbiology Microscopy Resultc
Range Codec Terminologyc

has standard operating procedureop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStandardOperatingProcedure
Description

standard operating procedure associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Sequencing Assayc Sequencing Analysisc Library Preparationc Data Processingc Assayc Sample Processingc
Range Standard Operating Procedurec

has start cytoband codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStartCytobandCode
Description

coded information specifying the start cytoband of the concept

Super-properties has codeop
Domain(s) Chromosomal Locationc
Range Terminologyc Codec

has status codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStatusCode
Description

coded information specifying the status of the concept

Super-properties has codeop
Domain(s) Consentc
Range Terminologyc Codec

has subject ageop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSubjectAge
Description

age of the individual at the time of the event

Super-properties SPHN attribute objectop
Domain(s) Nursing Diagnosisc Diagnosisc Billed Diagnosisc Oncology Diagnosisc
Range Agec

has subject physiologic stateop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSubjectPhysiologicState
Description

physiologic state of the subject

Super-properties SPHN attribute objectop
Domain(s) Electrocardiographic Procedurec Heart Rate Measurementc
Range Physiologic Statec

has subject pseudo identifierop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSubjectPseudoIdentifier
Description

link to a pseudo code assigned as unique identifier to an individual by a data provider institute

Super-properties SPHN attribute objectop
Domain(s) Allergyc Data Processingc Sample Processingc Tumor Specimenc Assayc Problem Conditionc Vital Statusc Electrocardiographic Procedurec Nationalityc Body Surface Areac Cardiac Output Measurementc Agec Consentc Drug Administration Eventc Birth Datec Resuscitation Directivec Exposurec Fluid Balancec Death Datec Radiotherapy Procedurec Time Series Data Filec Tobacco Exposurec Lab Test Eventc Civil Statusc Body Positionc Diagnosisc Billed Diagnosisc Imaging Procedurec Excluded Disorderc Birthc Variant Descriptorc Antimicrobial Susceptibility Lab Test Eventc Sequencing Assayc Circumference Measurementc Drug Prescriptionc Body Weight Measurementc Microorganism Identification Lab Test Eventc Administrative Sexc Implant Presencec Medical Procedurec Oncology Diagnosisc Respiratory Rate Measurementc Isolatec Body Mass Indexc Nutrition Intakec Healthcare Encounterc Cardiac Indexc Microbiology Microscopy Lab Test Eventc Samplec Oncology Surgeryc Measurementc Oxygen Saturation Measurementc Body Height Measurementc Heart Rate Measurementc Data Filec Tumor Stage Assessment Eventc Fluid Input Outputc Microbiology Biomolecule Presence Lab Test Eventc Library Preparationc Blood Pressure Measurementc Insurance Statusc Inhaled Oxygen Concentrationc Allergy Episodec Body Temperature Measurementc Deathc Access Device Presencec Tumor Grade Assessment Eventc Nursing Diagnosisc Sequencing Analysisc Follow Upc Home Addressc Assessment Eventc Adverse Eventc Billed Procedurec Biobanksamplec Gestational Age At Birthc Organ Supportc Transplant Presencec Administrative Casec
Range Subject Pseudo Identifierc

has substanceop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSubstance
Description

substance associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Nutrition Intakec Fluid Input Outputc
Range Substancec

has swiss socio economic positionop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSwissSocioEconomicPosition
Description

area-based measure of socio-economic position (SEP) for Switzerland

Super-properties SPHN attribute objectop
Domain(s) Home Addressc
Range Swiss Socio Economic Positionc

has systolic pressureop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSystolicPressure
Description

systolic pressure of the concept

Super-properties has quantityop
Domain(s) Blood Pressurec
Range Quantityc

has target enrichment kit codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTargetEnrichmentKitCode
Description

coded information specifying the target enrichment kit associated to the concept

Super-properties has codeop
Domain(s) Library Preparationc
Range Codec Terminologyc

has target locationop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTargetLocation
Description

physical location where the individual went to

Super-properties has locationop
Domain(s) Healthcare Encounterc
Range Locationc

has target moleculeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTargetMolecule
Description

target molecule associated to the concept

Super-properties SPHN attribute objectop
Domain(s) Microbiology Biomolecule Presence Lab Testc
Range Proteinc Genec

has test kitop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTestKit
Description

test kit used for the concept

Super-properties SPHN attribute objectop
Domain(s) Lab Testc Microbiology Biomolecule Presence Lab Testc Antimicrobial Susceptibility Lab Testc Microbiology Microscopy Lab Testc Microorganism Identification Lab Testc
Range Lab Analyzerc

has therapeutic areaop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTherapeuticArea
Description

type of care provided

Super-properties SPHN attribute objectop
Domain(s) Healthcare Encounterc
Range Therapeutic Areac

has time patternop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTimePattern
Description

type of repetitive sequence of events over time of the concept

Super-properties SPHN attribute objectop
Domain(s) Drug Prescriptionc Drug Administration Eventc
Range Time Patternc

has time to positivityop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTimeToPositivity
Description

time to positivity associated to the concept

Super-properties has quantityop
Domain(s) Microorganism Identification Resultc
Range Quantityc

has total copy numberop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTotalCopyNumber
Description

total number of copies of the allele

Super-properties has quantityop
Domain(s) Copy Number Variationc
Range Quantityc

has transcriptop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTranscript
Description

RNA product of the concept

Super-properties SPHN attribute objectop
Domain(s) Genec
Range Transcriptc

has transplantop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTransplant
Description

transplanted organ or tissue

Super-properties SPHN attribute objectop
Domain(s) Transplant Presencec
Range Transplantc

has tumor purityop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTumorPurity
Description

percentage of cancer cells in the sample

Super-properties has quantityop
Domain(s) Tumor Specimenc
Range Quantityc

has type codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTypeCode
Description

coded information specifying the type of the concept

Super-properties has codeop
Domain(s) Lab Analyzerc Variant Descriptorc Implantc Copy Number Variationc Medical Devicec Access Devicec Consentc Tobacco Exposurec Locationc Care Handlingc Time Patternc
Range Codec Terminologyc

has unitop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasUnit
Description

unit of the concept

Super-properties SPHN attribute objectop
Domain(s) Quantityc
Range Unitc

has upper limitop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasUpperLimit
Description

top value of the concept

Super-properties has quantityop
Domain(s) Reference Rangec
Range Quantityc

has verification status codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasVerificationStatusCode
Description

coded information specifying the verification status of the concept

Super-properties has codeop
Domain(s) Allergyc
Range Terminologyc Codec

has zygosity codeop # OPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasZygosityCode
Description

coded information specifying the allelic state of the concept

Super-properties has codeop
Domain(s) Variant Descriptorc
Range Terminologyc Codec

Datatype Properties

SPHN attribute datatypedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#SPHNAttributeDatatype
Description

SPHN datatype attribute defined by the dataset

has admission datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAdmissionDateTime
Description

datetime the individual enters the healthcare provider institute, e.g. gets registered at the admission counter

Super-properties has datetimedp
Domain(s) Administrative Casec
Data type xsd:dateTimec

has alternate alleledp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasAlternateAllele
Description

the alternate nucleotide (A;T;C;G) of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Single Nucleotide Variationc
Data type xsd:stringc

has biobank namedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasBiobankName
Description

name of the biobank where the sample is stored

Super-properties has namedp
Domain(s) Biobanksamplec
Data type xsd:stringc

has coding system and versiondp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCodingSystemAndVersion
Description

name and version of the coding system

Super-properties SPHN attribute datatypedp
Domain(s) Variant Notationc Codec
Data type xsd:stringc

has collection datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCollectionDateTime
Description

datetime of collection of the concept

Super-properties has datetimedp
Domain(s) Isolatec Samplec Tumor Specimenc
Data type xsd:dateTimec

has creation datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasCreationDateTime
Description

datetime the concept was created

Super-properties has datetimedp
Domain(s) Time Series Data Filec Data Filec
Data type xsd:dateTimec

has datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDateTime
Description

datetime of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Body Temperaturec Antimicrobial Susceptibility Lab Test Eventc Microorganism Identification Lab Test Eventc Reference Interpretationc Cardiac Outputc Microbiology Microscopy Lab Test Eventc Microbiology Biomolecule Presence Lab Test Eventc Oxygen Saturationc Tumor Stage Assessment Eventc Inhaled Oxygen Concentrationc Allergy Episodec Respiratory Ratec Tumor Grade Assessment Eventc Follow Upc Interpretationc Assessment Eventc Consentc Body Heightc Circumferencec Lab Test Eventc Sequencing Runc Blood Pressurec Body Weightc Semantic Mappingc Heart Ratec
Data type xsd:dateTimec

has daydp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDay
Description

day of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Death Datec Birth Datec
Data type xsd:gDayc

has descriptiondp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDescription
Description

description associated to the concept

Super-properties SPHN attribute datatypedp
Domain(s) Standard Operating Procedurec Softwarec
Data type xsd:stringc

has determination datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDeterminationDateTime
Description

datetime of determination of the concept

Super-properties has datetimedp
Domain(s) Body Surface Areac Agec Body Mass Indexc Cardiac Indexc
Data type xsd:dateTimec

has discharge datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasDischargeDateTime
Description

datetime the individual leaves the healthcare provider institute

Super-properties has datetimedp
Domain(s) Administrative Casec
Data type xsd:dateTimec

has enddp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasEnd
Description

end of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Genomic Positionc
Data type xsd:doublec

has end datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasEndDateTime
Description

datetime at which the concept ended

Super-properties has datetimedp
Domain(s) Access Device Presencec Home Addressc Billed Procedurec Organ Supportc Transplant Presencec Electrocardiographic Procedurec Cardiac Output Measurementc Drug Administration Eventc Exposurec Radiotherapy Procedurec Tobacco Exposurec Body Positionc Imaging Procedurec Circumference Measurementc Body Weight Measurementc Implant Presencec Fluid Balancec Medical Procedurec Respiratory Rate Measurementc Healthcare Encounterc Oncology Surgeryc Measurementc Oxygen Saturation Measurementc Body Height Measurementc Heart Rate Measurementc Nutrition Intakec Fluid Input Outputc Blood Pressure Measurementc Insurance Statusc Body Temperature Measurementc
Data type xsd:dateTimec

has event datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasEventDateTime
Description

datetime of the event

Super-properties has datetimedp
Domain(s) Civil Statusc
Data type xsd:dateTimec

has exactdp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasExact
Description

detailed description of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Locationc
Data type xsd:stringc

has extraction datetimedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasExtractionDateTime
Description

date of the extraction of the data

Super-properties has datetimedp
Domain(s) Data Releasec
Data type xsd:dateTimec

has first administration datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFirstAdministrationDateTime
Description

datetime of first administration

Super-properties has datetimedp
Domain(s) Drug Prescriptionc
Data type xsd:dateTimec

has first record datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasFirstRecordDateTime
Description

datetime the concept was first recorded

Super-properties has record datetimedp
Domain(s) Allergyc
Data type xsd:dateTimec

has generic namedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGenericName
Description

generic name of the concept

Super-properties has namedp
Domain(s) Substancec
Data type xsd:stringc

has genomic sequencedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasGenomicSequence
Description

sequence representation of the nucleotide bases (adenine, thymine, cytosine, and guanine) in a specific order

Super-properties SPHN attribute datatypedp
Domain(s) Genomic Insertionc Genomic Deletionc
Data type xsd:stringc

has identifierdp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIdentifier
Description

unique identifier identifying the concept

Super-properties SPHN attribute datatypedp
Domain(s) Isolatec Healthcare Encounterc Subject Pseudo Identifierc Samplec Codec Tumor Specimenc Assayc Biobanksamplec Administrative Casec Sequencing Runc Sequencing Assayc
Data type xsd:stringc

has incidence datetimedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIncidenceDateTime
Description

datetime of incidence of the concept

Super-properties has datetimedp
Domain(s) Oncology Diagnosisc
Data type xsd:dateTimec

has interventiondp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasIntervention
Description

intervention suspected to be the cause of the concept, e.g. drug

Super-properties SPHN attribute datatypedp
Domain(s) Adverse Eventc
Data type xsd:stringc

has last administration datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasLastAdministrationDateTime
Description

datetime of last administration

Super-properties has datetimedp
Domain(s) Drug Prescriptionc
Data type xsd:dateTimec

has last reaction datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasLastReactionDateTime
Description

datetime of the last reaction

Super-properties has datetimedp
Domain(s) Allergyc
Data type xsd:dateTimec

has monthdp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasMonth
Description

month of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Birth Datec Death Datec
Data type xsd:gMonthc

has namedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasName
Description

name associated to the concept

Super-properties SPHN attribute datatypedp
Domain(s) Tumor Grade Assessmentc Assessmentc Standard Operating Procedurec Data Filec Tumor Stage Assessmentc Codec Healthcare Primary Information Systemc Departmentc Softwarec Time Series Data Filec Source Systemc Drug Articlec Assessment Componentc
Data type xsd:stringc

has onset datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasOnsetDateTime
Description

datetime the concept first occurred or was observed

Super-properties has datetimedp
Domain(s) Adverse Eventc Problem Conditionc
Data type xsd:dateTimec

has record datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasRecordDateTime
Description

datetime the concept was recorded

Super-properties has datetimedp
Domain(s) Nationalityc Excluded Disorderc Resuscitation Directivec Exposurec Administrative Sexc Implant Presencec Tobacco Exposurec Diagnosisc Billed Diagnosisc Drug Prescriptionc Oncology Diagnosisc Transplant Presencec Problem Conditionc Nursing Diagnosisc
Data type xsd:dateTimec

has reference alleledp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasReferenceAllele
Description

the reference nucleotide (A;T;C;G) of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Single Nucleotide Variationc
Data type xsd:stringc

has report datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasReportDateTime
Description

datetime the concept was reported

Super-properties has datetimedp
Domain(s) Lab Test Eventc Antimicrobial Susceptibility Lab Test Eventc Microorganism Identification Lab Test Eventc Microbiology Microscopy Lab Test Eventc Microbiology Biomolecule Presence Lab Test Eventc Deathc
Data type xsd:dateTimec

has shared identifierdp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasSharedIdentifier
Description

identifier that is shared across data providers

Super-properties SPHN attribute datatypedp
Domain(s) Isolatec Samplec Subject Pseudo Identifierc Tumor Specimenc
Data type xsd:anyURIc

has standard guidelinedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStandardGuideline
Description

standard document associated to the concept

Super-properties SPHN attribute datatypedp
Domain(s) Interpretationc Reference Interpretationc Antimicrobial Susceptibility Resultc
Data type xsd:stringc

has startdp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStart
Description

start of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Genomic Positionc
Data type xsd:doublec

has start datetimedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStartDateTime
Description

datetime at which the concept started

Super-properties has datetimedp
Domain(s) Sequencing Assayc Circumference Measurementc Oxygen Saturation Measurementc Medical Procedurec Respiratory Rate Measurementc Nutrition Intakec Healthcare Encounterc Oncology Surgeryc Measurementc Body Height Measurementc Heart Rate Measurementc Billed Procedurec Fluid Input Outputc Library Preparationc Blood Pressure Measurementc Data Processingc Insurance Statusc Assayc Body Temperature Measurementc Access Device Presencec Sequencing Analysisc Home Addressc Drug Administration Eventc Organ Supportc Transplant Presencec Sample Processingc Electrocardiographic Procedurec Cardiac Output Measurementc Body Weight Measurementc Exposurec Implant Presencec Fluid Balancec Radiotherapy Procedurec Tobacco Exposurec Body Positionc Imaging Procedurec
Data type xsd:dateTimec

has string valuedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasStringValue
Description

textual representation

Super-properties SPHN attribute datatypedp
Domain(s) Microbiology Microscopy Resultc Tumor Grade Assessment Resultc Microbiology Biomolecule Presence Resultc Tumor Stage Assessment Resultc Lab Resultc Source Datac Problem Conditionc Microorganism Identification Resultc Antimicrobial Susceptibility Resultc Assessment Resultc Hashc
Data type xsd:stringc

has template identifierdp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTemplateIdentifier
Description

unique identifier identifying the template of the concept

Super-properties has identifierdp
Domain(s) Consentc
Data type xsd:stringc

has timedp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasTime
Description

time of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Birth Datec Death Datec
Data type xsd:timec

has uniform resource identifierdp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasUniformResourceIdentifier
Description

unique identifier of the concept that allows the system to identify all the information needed to access the resource

Super-properties has identifierdp
Domain(s) Time Series Data Filec Data Filec
Data type xsd:stringc

has uniform resource locatordp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasUniformResourceLocator
Description

uniform resource locator (URL) associated to the concept

Super-properties SPHN attribute datatypedp
Domain(s) Softwarec
Data type xsd:stringc

has valuedp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasValue
Description

value of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Variant Notationc Swiss Socio Economic Positionc Quantityc
Data type xsd:stringc xsd:doublec

has versiondp # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasVersion
Description

version of the concept value or code

Super-properties SPHN attribute datatypedp
Domain(s) Softwarec Standard Operating Procedurec Swiss Socio Economic Positionc
Data type xsd:stringc

has yeardp De-id # DPs

URI https://biomedit.ch/rdf/sphn-schema/sphn#hasYear
Description

year of the concept

Super-properties SPHN attribute datatypedp
Domain(s) Birth Datec Death Datec
Data type xsd:gYearc

Annotation Properties

descriptionap # APs

URI http://purl.org/dc/elements/1.1/description

titleap # APs

URI http://purl.org/dc/elements/1.1/title

licenseap # APs

URI http://purl.org/dc/terms/license

deprecatedap # APs

URI http://www.w3.org/2002/07/owl#deprecated

maxCardinalityap # APs

URI http://www.w3.org/2002/07/owl#maxCardinality

minCardinalityap # APs

URI http://www.w3.org/2002/07/owl#minCardinality

noteap # APs

URI http://www.w3.org/2004/02/skos/core#note

replacesap # APs

URI https://biomedit.ch/rdf/sphn-schema/sphn#replaces
Description

Property that links the new version of an SPHN class replacing an SPHN old class

subject to de-identificationap # APs

URI https://biomedit.ch/rdf/sphn-schema/sphn#subjectToDeIdentification
Description

Property that marks a resource subject to de-identification rules at the time of data preparation

Named Individuals

ASCIIni

Class(es)
Data File encoding
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ASCII

Acid Citrate Dextroseni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#AcidCitrateDextrose

Addiction Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#AddictionMedicine

Alcohol Basedni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#AlcoholBased

Aldehyde Basedni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#AldehydeBased

Aldehyde-Based Stabilizer For CTCsni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#AldehydeBasedStabilizerForCTCs

Allergology And Clinical Immunologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#AllergologyAndClinicalImmunology

Allprotect ® Tissue Reagentni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#AllprotectTissueReagent

Anaesthesiologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Anaesthesiology

Angiologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Angiology

Billingni

Class(es)
Semantic Mapping purpose
Source System purpose
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Billing

Biobankni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Biobank

Cardiac And Thoracic Vascular Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CardiacAndThoracicVascularSurgery

Cardiologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Cardiology

Case Report Formni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CaseReportForm

Cell Preparation Tube® Citrateni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CellPreparationTubeCitrate

Cell Preparation Tube® Heparinni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CellPreparationTubeHeparin

Chemical Additives / Stabilizersni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ChemicalAdditivesStabilizers

Child And Adolescent Psychiatry And Psychotherapyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ChildAndAdolescentPsychiatryAndPsychotherapy

Child And Adolescent Psychologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ChildAndAdolescentPsychology

Chiropractic Specialistni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ChiropracticSpecialist

Citrate Phosphate Dextroseni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CitratePhosphateDextrose

Clinical Data Platformni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ClinicalDataPlatform

Clinical Pharmacology And Toxicologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ClinicalPharmacologyAndToxicology

Clinical Psychologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ClinicalPsychology

Clinical Registryni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ClinicalRegistry

Cohortni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Cohort

Community Pharmacyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CommunityPharmacy

Companyni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Company

Complementaryni

Class(es)
Billed Diagnosis rank
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Complementary

Congenital Abnormalityni

Class(es)
Adverse Event consequences
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CongenitalAbnormality

Curved-Rod-Shapedni

Class(es)
Microbiology Microscopy Result cell morphology
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#CurvedRodShaped

Data Repositoryni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#DataRepository

Deathni

Class(es)
Adverse Event consequences
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Death

Dermatology And Venereologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#DermatologyAndVenereology

Du Boisni

Class(es)
Body Surface Area calculation method
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#DuBois

EDTA And Gelni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#EDTAAndGel

Elongatedni

Class(es)
Microbiology Microscopy Result cell morphology
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Elongated

Endocrinology And Diabetologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#EndocrinologyAndDiabetology

Entire Cellni

Class(es)
Microbiology Microscopy Result cell organization
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#EntireCell

External Laboratoryni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ExternalLaboratory

Fatalni

Class(es)
Adverse Event outcome
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Fatal

Federal Officeni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#FederalOffice

Filamentousni

Class(es)
Microbiology Microscopy Result cell morphology
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Filamentous

Foreignni

Class(es)
Insurance Status coverage type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Foreign

Forensic Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ForensicMedicine

Gastroenterologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Gastroenterology

Generalni

Class(es)
Insurance Status coverage type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#General

General Internal Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#GeneralInternalMedicine

General Medical Practitionerni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#GeneralMedicalPractitioner

General Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#GeneralMedicine

Geriatric Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#GeriatricMedicine

Glassni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Glass

>ni

Class(es)
Comparator
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThan

>=ni

Class(es)
Comparator
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#GreaterThanOrEqual

Gynaecology And Obstetricsni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#GynaecologyAndObstetrics

Haematologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Haematology

Hand Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#HandSurgery

Health Insuranceni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#HealthInsurance

Health Psychologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#HealthPsychology

Healthcare Information Systemni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#HealthcareInformationSystem

Heat Stabilizationni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#HeatStabilization

Hirudinni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Hirudin

Hospitalni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Hospital

Hospital Pharmacyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#HospitalPharmacy

Hospitalisation Or Prolongationni

Class(es)
Adverse Event consequences
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#HospitalisationOrProlongation

ISO-8859-1ni

Class(es)
Data File encoding
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ISO88591

Infectologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Infectology

Intensive Care Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#IntensiveCareMedicine

Inter-Residue Coordinatesni

Class(es)
Genomic Position coordinate convention
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#InterResidueCoordinates

Internal Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#InternalMedicine

<ni

Class(es)
Comparator
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThan

<=ni

Class(es)
Comparator
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#LessThanOrEqual

Life-Threateningni

Class(es)
Adverse Event consequences
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#LifeThreatening

Lithium Heparinni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#LithiumHeparin

Lithium Heparin And Gelni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#LithiumHeparinAndGel

Lithium Heparin And Rubber Plugni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#LithiumHeparinAndRubberPlug

MD5ni

Class(es)
Hash algorithm
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#MD5

Medical Geneticsni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#MedicalGenetics

Medical Oncologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#MedicalOncology

Mostellerni

Class(es)
Body Surface Area calculation method
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Mosteller

Multicellularni

Class(es)
Microbiology Microscopy Result cell organization
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Multicellular

Nephrologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Nephrology

Neurologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Neurology

Neuropsychologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Neuropsychology

Neurosurgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Neurosurgery

Neutral Buffered Formalinni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NeutralBufferedFormalin

Non-Aldehyde-Based Stabilizer For Cell-Free Nucleic Acidsni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NonAldehydeBasedStabilizerForCellFreeNucleicAcids

Nonaldehyde Based Without Acetic Acidni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NonaldehydeBasedWithoutAceticAcid

Nonaldehyde With Acetic Acidni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NonaldehydeWithAceticAcid

Nonbuffered Formalinni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NonbufferedFormalin

Noneni

Class(es)
Insurance Status coverage type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#None

None Of The Consequences Mentionedni

Class(es)
Adverse Event consequences
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NoneOfTheConsequencesMentioned

Not Recoveredni

Class(es)
Adverse Event outcome
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NotRecovered

Nuclear Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#NuclearMedicine

OMICS Facilityni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#OMICSFacility

Occupational Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#OccupationalMedicine

Ophthalmologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Ophthalmology

Optimum Cutting Temperature Mediumni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#OptimumCuttingTemperatureMedium

Oragene Collection Container Or Equivalentni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#OrageneCollectionContainerOrEquivalent

Oral And Maxillofacial Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#OralAndMaxillofacialSurgery

Oral Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#OralSurgery

Orthodonticsni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Orthodontics

Orthopaedic Surgery And Traumatology Of The Locomotor Apparatusni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#OrthopaedicSurgeryAndTraumatologyOfTheLocomotorApparatus

Otherni

Class(es)
Therapeutic Area specialty name
Insurance Status coverage type
Sample primary container
Body Surface Area calculation method
Microbiology Microscopy Result cell morphology
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Other

Otorhinolaryngologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Otorhinolaryngology

Ovoidni

Class(es)
Microbiology Microscopy Result cell morphology
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Ovoid

PAXgene® Blood DNAni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PAXgeneBloodDNA

PAXgene® Blood RNA+ni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PAXgeneBloodRNAplus

PAXgene® Bone Marrow RNAni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PAXgeneBoneMarrowRNA

PAXgene Tissueni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PAXgeneTissue

Paediatric Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PaediatricSurgery

Paediatricsni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Paediatrics

Pathologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Pathology

Patient Careni

Class(es)
Semantic Mapping purpose
Source System purpose
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PatientCare

Periodonticsni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Periodontics

Permanent Damage Or Disabilityni

Class(es)
Adverse Event consequences
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PermanentDamageOrDisability

Pharmaceutical Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PharmaceuticalMedicine

Pharmacyni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Pharmacy

Physical Filtration Systemni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PhysicalFiltrationSystem

Physical Medicine And Rehabilitationni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PhysicalMedicineAndRehabilitation

Plastic, Reconstructive And Aesthetic Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PlasticReconstructiveAndAestheticSurgery

Pneumologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Pneumology

Polyethylene Tube Sterileni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PolyethyleneTubeSterile

Polypropylene Tube Sterileni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PolypropyleneTubeSterile

Potassium EDTAni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PotassiumEDTA

Prevention And Public Healthni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PreventionAndPublicHealth

Principalni

Class(es)
Billed Procedure rank
Billed Diagnosis rank
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Principal

Privateni

Class(es)
Insurance Status coverage type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Private

Private Practiceni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PrivatePractice

Protease Inhibitorsni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ProteaseInhibitors

Psychiatry And Psychotherapyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#PsychiatryAndPsychotherapy

Psychotherapyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Psychotherapy

Quality Controlni

Class(es)
Semantic Mapping purpose
Source System purpose
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#QualityControl

RNA Laterni

Class(es)
Sample primary container
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#RNALater

Radio-Oncology And Radiotherapyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#RadioOncologyAndRadiotherapy

Radiologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Radiology

Reconstructive Dentistryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ReconstructiveDentistry

Recoveredni

Class(es)
Adverse Event outcome
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Recovered

Recoveringni

Class(es)
Adverse Event outcome
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Recovering

Recovering With Sequelaeni

Class(es)
Adverse Event outcome
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#RecoveringWithSequelae

Researchni

Class(es)
Semantic Mapping purpose
Source System purpose
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Research

Research Laboratoryni

Class(es)
Source System category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ResearchLaboratory

Research Organizationni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ResearchOrganization

Residue Coordinatesni

Class(es)
Genomic Position coordinate convention
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ResidueCoordinates

Rheumatologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Rheumatology

Rod-Shapedni

Class(es)
Microbiology Microscopy Result cell morphology
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#RodShaped

Roundni

Class(es)
Microbiology Microscopy Result cell morphology
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Round

S8820 Protease Inhibitor Tablets Or Equivalentni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#S8820ProteaseInhibitorTabletsOrEquivalent

SHA-256ni

Class(es)
Hash algorithm
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SHA256

SHA-512ni

Class(es)
Hash algorithm
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SHA512

Secondaryni

Class(es)
Billed Diagnosis rank
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Secondary

Semi-Privateni

Class(es)
Insurance Status coverage type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SemiPrivate

Serum Separator Tube With Clot Activatorni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SerumSeparatorTubeWithClotActivator

Serum Tube Without Clot Activatorni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SerumTubeWithoutClotActivator

Service Providerni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ServiceProvider

Snap Freezingni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SnapFreezing

Sodium Citrateni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SodiumCitrate

Sodium EDTAni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SodiumEDTA

Sodium Fluoride/Potassium Oxalateni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SodiumFluoridePotassiumOxalate

Sodium Heparinni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#SodiumHeparin

Spiralni

Class(es)
Microbiology Microscopy Result cell morphology
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Spiral

Stool Collection Container With DNA Stabilizerni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#StoolCollectionContainerWithDNAStabilizer

Supplementaryni

Class(es)
Billed Procedure rank
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Supplementary

Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Surgery

Temporarily Serious Impact / Medically Importantni

Class(es)
Adverse Event consequences
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#TemporarilySeriousImpactMedicallyImportant

Tempus® Tubeni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#TempusTube

Thoracic Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#ThoracicSurgery

Trace Elements Tubeni

Class(es)
Sample primary container
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#TraceElementsTube

Tropical And Travel Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#TropicalAndTravelMedicine

UTF-16ni

Class(es)
Data File encoding
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#UTF16

UTF-8ni

Class(es)
Data File encoding
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#UTF8

Unicellularni

Class(es)
Microbiology Microscopy Result cell organization
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Unicellular

Universityni

Class(es)
Data Provider category
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#University

Urologyni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#Urology

Vacuum Technology Stabilizationni

Class(es)
Sample fixation type
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#VacuumTechnologyStabilization

Vascular Surgeryni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#VascularSurgery

Visceral Medicineni

Class(es)
Therapeutic Area specialty name
URI https://biomedit.ch/rdf/sphn-schema/sphn/individual#VisceralMedicine

Namespaces

default (:)
https://biomedit.ch/rdf/sphn-schema/sphn
chop
https://biomedit.ch/rdf/sphn-resource/chop/
dc
http://purl.org/dc/elements/1.1/
dcterms
http://purl.org/dc/terms/
eco
http://purl.obolibrary.org/obo/ECO_
edam
http://edamontology.org/
efo
http://www.ebi.ac.uk/efo/
emdn
https://biomedit.ch/rdf/sphn-resource/emdn/
genepio
http://purl.obolibrary.org/obo/GENEPIO_
geno
http://purl.obolibrary.org/obo/GENO_
icd-10-gm
https://biomedit.ch/rdf/sphn-resource/icd-10-gm/
loinc
https://loinc.org/rdf/
obi
http://purl.obolibrary.org/obo/
ordo
http://www.orpha.net/ORDO/
owl
http://www.w3.org/2002/07/owl#
prov
http://www.w3.org/ns/prov#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
sdo
https://schema.org/
skos
http://www.w3.org/2004/02/skos/core#
snomed
http://snomed.info/id/
so
http://purl.obolibrary.org/obo/SO_
sphn
https://biomedit.ch/rdf/sphn-schema/sphn#
sphn-atc
https://biomedit.ch/rdf/sphn-resource/atc/
sphn-deprecated
https://biomedit.ch/rdf/sphn-ontology/sphn#
sphn-eco
https://biomedit.ch/rdf/sphn-resource/eco/
sphn-edam
https://biomedit.ch/rdf/sphn-resource/edam/
sphn-efo
https://biomedit.ch/rdf/sphn-resource/efo/
sphn-genepio
https://biomedit.ch/rdf/sphn-resource/genepio/
sphn-geno
https://biomedit.ch/rdf/sphn-resource/geno/
sphn-hgnc
https://biomedit.ch/rdf/sphn-resource/hgnc/
sphn-loinc
https://biomedit.ch/rdf/sphn-resource/loinc/
sphn-obi
https://biomedit.ch/rdf/sphn-resource/obi/
sphn-ordo
https://biomedit.ch/rdf/sphn-resource/ordo/
sphn-so
https://biomedit.ch/rdf/sphn-resource/so/
ucum
https://biomedit.ch/rdf/sphn-resource/ucum/
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
apAnnotation Properties
pProperties
niNamed Individuals