Gstk1 (glutathione S-transferase kappa 1) - Rat Genome Database

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Gene: Gstk1 (glutathione S-transferase kappa 1) Rattus norvegicus
Analyze
Symbol: Gstk1
Name: glutathione S-transferase kappa 1
RGD ID: 735188
Description: Predicted to enable glutathione peroxidase activity and glutathione transferase activity. Predicted to be involved in epithelial cell differentiation and glutathione metabolic process. Located in mitochondrial matrix. Orthologous to human GSTK1 (glutathione S-transferase kappa 1); PARTICIPATES IN glutathione conjugation pathway; glutathione metabolic pathway; phase I biotransformation pathway via cytochrome P450; INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glutathione S-transferase subunit 13; glutathione S-transferase, mitochondrial; GST 13-13; GST class-kappa; GST13-13; GSTK1-1; GSTkappa; rGSTK1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,085,532 - 72,089,934 (+)NCBIGRCr8
mRatBN7.2471,118,979 - 71,123,298 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,118,896 - 71,123,292 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx476,038,785 - 76,043,096 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,952,032 - 71,956,343 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0470,371,499 - 70,375,808 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0471,621,777 - 71,626,096 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl471,621,729 - 71,626,107 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04136,427,328 - 136,431,713 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4469,999,767 - 70,004,086 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1470,275,896 - 70,280,216 (+)NCBI
Celera466,050,514 - 66,054,833 (+)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(S)-nicotine  (ISO)
1,3-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3-methylcholanthrene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-nitrophenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
8'-apo-beta,psi-caroten-8'-al  (ISO)
aflatoxin B1  (ISO)
AICA ribonucleotide  (ISO)
alpha-hexachlorocyclohexane  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
atrazine  (EXP)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
beta-carotene  (ISO)
bilirubin IXalpha  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bleomycin A5  (ISO)
cadmium dichloride  (ISO)
chenodeoxycholic acid  (ISO)
chlordecone  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
ciprofibrate  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cypermethrin  (ISO)
deoxycholic acid  (ISO)
dextran sulfate  (ISO)
diazinon  (EXP)
dichlorine  (EXP)
diethyl maleate  (ISO)
dimethyl sulfoxide  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (EXP,ISO)
flutamide  (EXP)
genistein  (EXP)
glutathione  (ISO)
glycidyl methacrylate  (ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
isoflavones  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lutein  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
microcystin  (EXP)
microcystin-LR  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
naphthalene  (ISO)
nickel atom  (EXP)
nicotine  (ISO)
nitrofen  (EXP)
ochratoxin A  (EXP)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenethyl caffeate  (EXP)
phenobarbital  (EXP)
phenylephrine  (EXP)
phenytoin  (ISO)
PhIP  (EXP)
phlorizin  (ISO)
pirinixic acid  (ISO)
pravastatin  (EXP,ISO)
progesterone  (EXP)
Pyridostigmine bromide  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triazines  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
vancomycin  (ISO)
vitamin E  (ISO)
XL147  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrial matrix  (IDA,TAS)
mitochondrion  (IBA,ISO)
peroxisome  (IBA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease. Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Glutathione S-transferase class Kappa: characterization by the cloning of rat mitochondrial GST and identification of a human homologue. Pemble SE, etal., Biochem J 1996 Nov 1;319 ( Pt 3):749-54.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Glutathione S-transferase: genetics and role in toxicology. Strange RC, etal., Toxicol Lett 2000 Mar 15;112-113:357-63.
Additional References at PubMed
PMID:1883325   PMID:12477932   PMID:12720545   PMID:12865426   PMID:14651853   PMID:14742434   PMID:18614015   PMID:19199708   PMID:19946888   PMID:20178365   PMID:21492153   PMID:23376485  


Genomics

Comparative Map Data
Gstk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,085,532 - 72,089,934 (+)NCBIGRCr8
mRatBN7.2471,118,979 - 71,123,298 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,118,896 - 71,123,292 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx476,038,785 - 76,043,096 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,952,032 - 71,956,343 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0470,371,499 - 70,375,808 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0471,621,777 - 71,626,096 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl471,621,729 - 71,626,107 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04136,427,328 - 136,431,713 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4469,999,767 - 70,004,086 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1470,275,896 - 70,280,216 (+)NCBI
Celera466,050,514 - 66,054,833 (+)NCBICelera
Cytogenetic Map4q24NCBI
GSTK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387143,263,441 - 143,269,115 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7143,244,093 - 143,270,854 (+)EnsemblGRCh38hg38GRCh38
GRCh377142,960,534 - 142,966,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,670,686 - 142,676,328 (+)NCBINCBI36Build 36hg18NCBI36
Celera7137,797,393 - 137,803,091 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7137,297,887 - 137,303,587 (+)NCBIHuRef
CHM1_17142,897,388 - 142,903,108 (+)NCBICHM1_1
T2T-CHM13v2.07144,618,862 - 144,624,534 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,362,642 - 142,368,342 (+)NCBI
Gstk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,222,869 - 42,227,375 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl642,222,869 - 42,227,381 (+)EnsemblGRCm39 Ensembl
GRCm38642,245,935 - 42,250,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,245,935 - 42,250,447 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,195,934 - 42,200,440 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36642,175,542 - 42,180,048 (+)NCBIMGSCv36mm8
Celera642,190,122 - 42,194,626 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.52NCBI
Gstk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494383,341 - 387,630 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955494383,107 - 387,483 (-)NCBIChiLan1.0ChiLan1.0
GSTK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,116,341 - 180,122,050 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,126,607 - 32,136,166 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07135,258,184 - 135,267,254 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,749,461 - 147,755,158 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,749,461 - 147,755,158 (+)Ensemblpanpan1.1panPan2
GSTK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,411,678 - 6,416,135 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha167,400,563 - 7,405,021 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0166,265,390 - 6,269,847 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,265,390 - 6,269,842 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,212,775 - 6,217,230 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,064,698 - 6,069,155 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,140,101 - 6,144,565 (-)NCBIUU_Cfam_GSD_1.0
Gstk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,176,254 - 12,180,877 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527722,083 - 728,824 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527722,548 - 727,169 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSTK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,992,647 - 6,999,068 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,992,623 - 6,999,068 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,234,405 - 7,239,989 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSTK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,149,949 - 112,155,579 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21112,149,970 - 112,155,300 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660728,874,033 - 8,879,741 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gstk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480011,478,510 - 11,486,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480011,481,664 - 11,486,256 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gstk1
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000022275
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)46699318572752834Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)46699318572752834Rat
2317577Eae24Experimental allergic encephalomyelitis QTL 24nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)46699318572752834Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat

Markers in Region
RH128940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2471,123,128 - 71,123,286 (+)MAPPERmRatBN7.2
Rnor_6.0471,625,927 - 71,626,084NCBIRnor6.0
Rnor_5.04136,431,543 - 136,431,700UniSTSRnor5.0
RGSC_v3.4470,003,917 - 70,004,074UniSTSRGSC3.4
Celera466,054,664 - 66,054,821UniSTS
RH 3.4 Map4434.82UniSTS
Cytogenetic Map4q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 54 41 8 41 3 74 35 32 11
Low 3 11 8 8 9 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000022275   ⟹   ENSRNOP00000022275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl471,118,896 - 71,123,292 (+)Ensembl
Rnor_6.0 Ensembl471,621,729 - 71,626,107 (+)Ensembl
RefSeq Acc Id: NM_181371   ⟹   NP_852036
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8472,085,614 - 72,089,933 (+)NCBI
mRatBN7.2471,118,979 - 71,123,298 (+)NCBI
Rnor_6.0471,621,777 - 71,626,096 (+)NCBI
Rnor_5.04136,427,328 - 136,431,713 (+)NCBI
RGSC_v3.4469,999,767 - 70,004,086 (+)RGD
Celera466,050,514 - 66,054,833 (+)RGD
Sequence:
RefSeq Acc Id: XM_063285766   ⟹   XP_063141836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8472,085,532 - 72,089,934 (+)NCBI
RefSeq Acc Id: NP_852036   ⟸   NM_181371
- UniProtKB: O09034 (UniProtKB/Swiss-Prot),   P24473 (UniProtKB/Swiss-Prot),   B6DYQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022275   ⟸   ENSRNOT00000022275
RefSeq Acc Id: XP_063141836   ⟸   XM_063285766
- Peptide Label: isoform X1
Protein Domains
DSBA-like thioredoxin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P24473-F1-model_v2 AlphaFold P24473 1-226 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693007
Promoter ID:EPDNEW_R3530
Type:initiation region
Name:Gstk1_1
Description:glutathione S-transferase kappa 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0471,621,761 - 71,621,821EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:735188 AgrOrtholog
BioCyc Gene G2FUF-45097 BioCyc
Ensembl Genes ENSRNOG00000016484 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055028116 UniProtKB/Swiss-Prot
  ENSRNOG00060008463 UniProtKB/Swiss-Prot
  ENSRNOG00065016037 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022275 ENTREZGENE
  ENSRNOT00000022275.5 UniProtKB/Swiss-Prot
  ENSRNOT00055048654 UniProtKB/Swiss-Prot
  ENSRNOT00060014102 UniProtKB/Swiss-Prot
  ENSRNOT00065026651 UniProtKB/Swiss-Prot
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DSBA-like_thioredoxin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GSTK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCCAis_GSTk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:297029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 297029 ENTREZGENE
PANTHER GLUTATHIONE S-TRANSFERASE KAPPA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLUTATHIONE S-TRANSFERASE KAPPA 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DSBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gstk1 PhenoGen
PIRSF HCCAis_GSTk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016484 RatGTEx
  ENSRNOG00055028116 RatGTEx
  ENSRNOG00060008463 RatGTEx
  ENSRNOG00065016037 RatGTEx
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B6DYQ0 ENTREZGENE, UniProtKB/TrEMBL
  GSTK1_RAT UniProtKB/Swiss-Prot
  O09034 ENTREZGENE
  P24473 ENTREZGENE
UniProt Secondary O09034 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Gstk1  glutathione S-transferase kappa 1  GST13-13  glutathione S-transferase, mitochondrial  Symbol and Name updated 1299863 APPROVED