Rela (RELA proto-oncogene, NF-kB subunit) - Rat Genome Database

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Gene: Rela (RELA proto-oncogene, NF-kB subunit) Rattus norvegicus
Analyze
Symbol: Rela
Name: RELA proto-oncogene, NF-kB subunit
RGD ID: 727889
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including positive regulation of Schwann cell differentiation; positive regulation of miRNA transcription; and response to ischemia. Located in chromatin; cytoplasm; and nucleus. Part of protein-containing complex. Is active in synapse. Used to study Parkinsonism; encephalitis; status epilepticus; and steatotic liver disease. Biomarker of several diseases, including acute necrotizing pancreatitis; artery disease (multiple); colitis; end stage renal disease; and liver disease (multiple). Human ortholog(s) of this gene implicated in ductal carcinoma in situ; lung non-small cell carcinoma; lymphoma; and renal cell carcinoma. Orthologous to human RELA (RELA proto-oncogene, NF-kB subunit); PARTICIPATES IN ceramide signaling pathway; interleukin-1 signaling pathway; interleukin-12 signaling pathway; INTERACTS WITH (+)-pilocarpine; (+)-schisandrin B; (+)-taxifolin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: NFkB; nos2; nuclear factor kappa B subunit p65; nuclear factor kappaB subunit p65; transcription factor p65; v-rel avian reticuloendotheliosis viral oncogene homolog A; v-rel reticuloendotheliosis viral oncogene homolog A; v-rel reticuloendotheliosis viral oncogene homolog A (avian)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,354,336 - 212,364,815 (+)NCBIGRCr8
mRatBN7.21202,925,001 - 202,935,484 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,924,945 - 202,935,484 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,277,590 - 211,288,062 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,370,406 - 218,380,885 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,061,451 - 211,071,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,992,770 - 221,003,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,992,770 - 221,003,249 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,928,092 - 227,938,571 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,262,669 - 208,273,148 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,416,121 - 208,426,601 (+)NCBI
Celera1200,460,753 - 200,471,232 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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RelaRatacute necrotizing pancreatitis  IEP 2298789protein:increased expression:pancreasRGD 
RelaRatAlcoholic Liver Diseases  ISORGD:1551095405849393protein:increased phosphorylation:liverRGD 
RelaRatarteriosclerosis  IEP 2298774protein:increased expression:aortaRGD 
RelaRatBinge Drinking treatmentIEP 598099561 RGD 
RelaRatBrain Injuries  IEP 2298787protein:increased expression:ileumRGD 
RelaRatBreast Neoplasms  ISORGD:13527612298762 RGD 
RelaRatBreast Neoplasms  ISORGD:13527612298763 RGD 
RelaRatCardiomegaly treatmentIDA 1581122 RGD 
RelaRatCardiomegaly  IDA 1580656 RGD 
RelaRatCerebral Hemorrhage  IDA 2302394protein:increased activity:striatumRGD 
RelaRatcervix uteri carcinoma in situ disease_progressionISORGD:13527612298759protein:altered localization, increased expression:nucleus, uterine cervixRGD 
RelaRatChemotherapy-Related Cognitive Impairment treatmentIEP 597621662 RGD 
RelaRatcholesteatoma of middle ear  ISORGD:13527618552995protein:increased expression:mucosa of middle ear,skin of ear canal:RGD 
RelaRatChronic Intermittent Hypoxia  IEP 401793731mRNA:increased expression:kidney cortex (rat)RGD 
RelaRatChronic Intermittent Hypoxia  IEP 401959337protein:increased expression:liver (rat)RGD 
RelaRatchronic obstructive pulmonary disease  ISORGD:1551095155663371mRNA, protein:increased expression:lung (mouse)RGD 
RelaRatcolitis  IEP 2298776protein:increased expression:nucleusRGD 
RelaRatcryptorchidism  ISORGD:155109511567213protein:increased expression:testisRGD 
RelaRatDrug-Induced Dyskinesia  IEP 2298778protein:increased expression:nucleus, brainRGD 
RelaRatductal carcinoma in situ  ISORGD:13527612298754DNA:amplificationRGD 
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RelaRatAicardi-Goutieres Syndrome 3  ISORGD:13527618554872ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 3ClinVarPMID:28492532|PMID:28600438
RelaRatAutoinflammatory Disease, Familial, Behcet-Like-3  ISORGD:13527618554872ClinVar Annotator: match by term: Mucocutaneous ulceration, chronic | ClinVar Annotator: match by term: RELA-related more ...ClinVarPMID:25741868|PMID:28492532|PMID:28600438|PMID:29758562|PMID:32969189|PMID:35412596|PMID:36926348
RelaRatBardet-Biedl syndrome  ISORGD:13527618554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:12118255|PMID:16786513|PMID:21520335|PMID:27032803|PMID:28492532|PMID:8316268
RelaRatChildhood Schizophrenia  ISORGD:13527618554872ClinVar Annotator: match by term: Childhood-onset schizophreniaClinVarPMID:26508570
RelaRatglycogen storage disease V  ISORGD:13527618554872ClinVar Annotator: match by term: Glycogen storage disease, type VClinVarPMID:12118255|PMID:16786513|PMID:21520335|PMID:27032803|PMID:28492532|PMID:8316268
RelaRatimmunodeficiency 90  ISORGD:13527618554872ClinVar Annotator: match by term: Infections, recurrent, with encephalopathy, hepatic dysfunction, and cardiovascular malformationsClinVarPMID:28492532
RelaRatintellectual disability  ISORGD:13527618554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
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RelaRatadenocarcinoma  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:34973135
RelaRatalcoholic liver cirrhosis  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:23274713
RelaRatamphetamine abuse  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:19689456
RelaRatanaplastic large cell lymphoma  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:17261581
RelaRatBarrett's esophagus  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:15387324
RelaRatbrain ischemia  ISORGD:135276111554173CTD Direct Evidence: therapeuticCTDPMID:18628779
RelaRatBrain Neoplasms  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:20932960
RelaRatBreast Neoplasms  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:20154269
RelaRatcholestasis  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:20626112
RelaRatcolitis  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:23810507
RelaRatColonic Neoplasms  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:20715105
RelaRatCrohn's disease  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:36038634
RelaRatcystitis  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:22099998
RelaRatdiabetic angiopathy  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:25381014
RelaRatDiabetic Nephropathies  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:17900838
RelaRatDisease Progression  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:34626302|PMID:34973135
RelaRatDrug Eruptions  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:31150805
RelaRatend stage renal disease  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:19420110
RelaRatendocrine system disease  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:38043716
RelaRatExperimental Diabetes Mellitus  ISORGD:135276111554173CTD Direct Evidence: marker/mechanismCTDPMID:22138235
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RelaRatAutoinflammatory Disease, Familial, Behcet-Like-3  ISORGD:13527617240710 OMIM 

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RelaRat(+)-artemisinin multiple interactionsISORGD:13527616480464artemisinin inhibits the reaction [15-hydroxy-5,8,11,13-eicosatetraenoic acid affects the localization of RELA protein]; artemisinin inhibits the more ...CTDPMID:18463201|PMID:23355332
RelaRat(+)-artemisinin multiple interactionsISORGD:15510956480464artemisinin inhibits the reaction [trimethyltin chloride results in increased expression of RELA protein]CTDPMID:36696940
RelaRat(+)-catechin multiple interactionsISORGD:13527616480464[epigallocatechin gallate co-treated with gallocatechol co-treated with epicatechin gallate co-treated with Catechin analog] inhibits the more ...CTDPMID:19557821|PMID:26187476
RelaRat(+)-catechin decreases expressionISORGD:13527616480464Catechin results in decreased expression of RELA mRNA; Catechin results in decreased expression of RELA more ...CTDPMID:23706674
RelaRat(+)-catechin multiple interactionsISORGD:15510956480464Catechin inhibits the reaction [sodium arsenite results in increased expression of RELA protein]; Catechin inhibits more ...CTDPMID:15879681|PMID:34581093|PMID:39182636
RelaRat(+)-epicatechin-3-O-gallate multiple interactionsISORGD:13527616480464[epigallocatechin gallate co-treated with gallocatechol co-treated with epicatechin gallate co-treated with Catechin analog] inhibits the more ...CTDPMID:26187476
RelaRat(+)-Erythraline multiple interactionsISORGD:15510956480464erythraline inhibits the reaction [Lipopolysaccharides results in increased localization of RELA protein]CTDPMID:23902980
RelaRat(+)-isoborneol multiple interactionsISORGD:15510956480464isoborneol inhibits the reaction [Ceruletide results in decreased phosphorylation of RELA protein]CTDPMID:33166053
RelaRat(+)-pilocarpine multiple interactionsEXP 64804643-chloroacetylindole affects the reaction [[Pilocarpine co-treated with Lithium Chloride] results in increased phosphorylation of RELA more ...CTDPMID:31396050
RelaRat(+)-Pimaric acid multiple interactionsISORGD:13527616480464pimaric acid inhibits the reaction [TNF protein results in increased expression of RELA protein]CTDPMID:22705379
RelaRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of RELA mRNA]CTDPMID:31150632
RelaRat(+)-taxifolin multiple interactionsEXP 6480464[alogliptin co-treated with taxifolin] inhibits the reaction [[Diethylnitrosamine co-treated with Carbon Tetrachloride] results in increased more ...CTDPMID:33840231|PMID:33882723
RelaRat(+)-Tetrandrine multiple interactionsEXP 6480464tetrandrine inhibits the reaction [Dimethylnitrosamine results in increased localization of RELA protein]; tetrandrine inhibits the more ...CTDPMID:17201889
RelaRat(+)-Tetrandrine multiple interactionsISORGD:13527616480464tetrandrine results in decreased expression of and results in decreased activity of RELA proteinCTDPMID:30549224
RelaRat(+)-Tetrandrine increases phosphorylationISORGD:13527616480464tetrandrine results in increased phosphorylation of RELA proteinCTDPMID:31255635
RelaRat(-)-anisomycin multiple interactionsISORGD:13527616480464Anisomycin inhibits the reaction [1-hydroxyalantolactone inhibits the reaction [TGFB1 protein results in increased phosphorylation of more ...CTDPMID:34758440
RelaRat(-)-ephedrine multiple interactionsISORGD:13527616480464Ephedrine inhibits the reaction [Bleomycin results in increased phosphorylation of RELA protein]CTDPMID:37778983
RelaRat(-)-epigallocatechin 3-gallate multiple interactionsISORGD:13527616480464[epigallocatechin gallate co-treated with gallocatechol co-treated with epicatechin gallate co-treated with Catechin analog] inhibits the more ...CTDPMID:19557821|PMID:24508477|PMID:26187476|PMID:31252129
RelaRat(-)-epigallocatechin 3-gallate increases phosphorylationISORGD:15510956480464epigallocatechin gallate results in increased phosphorylation of RELA proteinCTDPMID:35863485
RelaRat(-)-epigallocatechin 3-gallate multiple interactionsEXP 6480464[candesartan co-treated with epigallocatechin gallate] inhibits the reaction [Gentamicins results in increased phosphorylation of RELA more ...CTDPMID:30368989|PMID:33754881

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Biological Process
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RelaRatanimal organ morphogenesis acts_upstream_of_or_withinISORGD:15510951624291MGI:1860444 PMID:9120401RGDPMID:9120401
RelaRatanimal organ morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatantiviral innate immune response involved_inISORGD:13527611624291 PMID:38114488RGDPMID:38114488
RelaRatantiviral innate immune response involved_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcanonical NF-kappaB signal transduction involved_inISORGD:13527611624291UniProtKB:P62328 PMID:12048232, PMID:1406630, PMID:21343177, PMID:23619365, PMID:23811396, PMID:23878390RGDPMID:12048232|PMID:1406630|PMID:21343177|PMID:23619365|PMID:23811396|PMID:23878390
RelaRatcanonical NF-kappaB signal transduction involved_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcanonical NF-kappaB signal transduction involved_inIBAFB:FBgn0011274|FB:FBgn0260632|MGI:103290|PANTHER:PTN000652441|UniProtKB:Q042061600115GO_REF:0000033GO_CentralGO_REF:0000033
RelaRatcanonical NF-kappaB signal transduction involved_inIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcellular response to angiotensin involved_inISORGD:13527611624291 PMID:22357537RGDPMID:22357537
RelaRatcellular response to angiotensin involved_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcellular response to hepatocyte growth factor stimulus acts_upstream_of_or_withinIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcellular response to hepatocyte growth factor stimulus acts_upstream_of_or_withinISORGD:15510951624291 PMID:21072211RGDPMID:21072211
RelaRatcellular response to hydrogen peroxide involved_inISORGD:13527611624291 PMID:21830064RGDPMID:21830064
RelaRatcellular response to hydrogen peroxide involved_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcellular response to interleukin-1 involved_inISORGD:13527611624291 PMID:18073330RGDPMID:18073330
RelaRatcellular response to interleukin-1 involved_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcellular response to interleukin-6 involved_inISORGD:13527611624291 PMID:22357537RGDPMID:22357537
RelaRatcellular response to interleukin-6 involved_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcellular response to lipopolysaccharide  IEP 2298880 RGD 
RelaRatcellular response to lipopolysaccharide involved_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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RelaRatchromatin located_inIDA 11059577PMID:26908121ParkinsonsUK-UCL 
RelaRatchromatin located_inIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatchromatin located_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatchromatin located_inISORGD:15510951624291 PMID:25152367RGDPMID:25152367
RelaRatchromatin located_inISORGD:13527611624291UniProtKB:P24001-1 PMID:21343296, PMID:23729669, PMID:26268439RGDPMID:21343296|PMID:23729669|PMID:26268439
RelaRatchromatin is_active_inISORGD:13527611624291 PMID:1406630, PMID:38114488, PMID:8413223RGDPMID:1406630|PMID:38114488|PMID:8413223
RelaRatcytoplasm located_inISORGD:15510951624291 PMID:11567019, PMID:12527755, PMID:14961764, PMID:16249387, PMID:16643855, PMID:19404405, PMID:19557165, PMID:21131967, PMID:22227519, PMID:26764146RGDPMID:11567019|PMID:12527755|PMID:14961764|PMID:16249387|PMID:16643855|PMID:19404405|PMID:19557165|PMID:21131967|PMID:22227519|PMID:26764146
RelaRatcytoplasm located_inIEAInterPro:IPR0004511600115GO_REF:0000002InterProGO_REF:0000002
RelaRatcytoplasm is_active_inIBAFB:FBgn0011274|FB:FBgn0260632|MGI:103289|MGI:103290|MGI:97897|PANTHER:PTN000652441|RGD:1311231|RGD:727889|UniProtKB:Q01201|UniProtKB:Q042061600115GO_REF:0000033GO_CentralGO_REF:0000033
RelaRatcytoplasm located_inISORGD:13527611624291UniProtKB:P24001-1 PMID:15790681, PMID:21097510, PMID:21343177, PMID:21830064, PMID:23729669, PMID:25411248, PMID:27736973, PMID:3140380RGDPMID:15790681|PMID:21097510|PMID:21343177|PMID:21830064|PMID:23729669|PMID:25411248|PMID:27736973|PMID:3140380
RelaRatcytoplasm located_inIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcytoplasm located_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcytoplasm  IDA 2300288MMO:0000538RGD 
RelaRatcytosol located_inISORGD:13527611624291 PMID:21474709, PMID:25327529RGDPMID:21474709|PMID:25327529
RelaRatcytosol located_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatcytosol located_inISORGD:15510951624291 PMID:11931770RGDPMID:11931770
RelaRatcytosol located_inISORGD:1352761|UniProtKB:Q04206-1|UniProtKB:Q04206-41624291 RGDGO_REF:0000052
RelaRatcytosol located_inIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatglutamatergic synapse is_active_inIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatglutamatergic synapse is_active_inISORGD:13527611624291 PMID:12947408RGDPMID:12947408
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Molecular Function
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RelaRatactinin binding enablesISORGD:13527611624291UniProtKB:O43707 PMID:25411248RGDPMID:25411248
RelaRatactinin binding enablesIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatactinin binding enablesIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatactinin binding enablesISORGD:15510951624291UniProtKB:P57780 PMID:25411248RGDPMID:25411248
RelaRatankyrin repeat binding enablesISORGD:15510951624291UniProtKB:Q5DW34 PMID:21131967RGDPMID:21131967
RelaRatankyrin repeat binding enablesIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatchromatin binding enablesISORGD:13527611624291 PMID:19058135RGDPMID:19058135
RelaRatchromatin binding enablesISORGD:15510951624291 PMID:19619491, PMID:20442316, PMID:21131967, PMID:24768298RGDPMID:19619491|PMID:20442316|PMID:21131967|PMID:24768298
RelaRatchromatin binding enablesIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatchromatin binding enablesIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatchromatin DNA binding enablesISORGD:13527611624291 PMID:25411248RGDPMID:25411248
RelaRatchromatin DNA binding enablesIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatDNA binding enablesISORGD:13527611624291 PMID:15790681, PMID:18073330, PMID:18212740, PMID:23091055RGDPMID:15790681|PMID:18073330|PMID:18212740|PMID:23091055
RelaRatDNA binding enablesIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatDNA binding enablesIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatDNA binding enablesISORGD:15510951624291 PMID:10227969, PMID:14961764, PMID:15684432, PMID:15845452, PMID:16260493, PMID:18505784, PMID:23262141RGDPMID:10227969|PMID:14961764|PMID:15684432|PMID:15845452|PMID:16260493|PMID:18505784|PMID:23262141
RelaRatDNA binding enablesIEAInterPro:IPR011539|InterPro:IPR0370591600115GO_REF:0000002InterProGO_REF:0000002
RelaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISORGD:13527611624291UniProtKB:P30990 PMID:1406630, PMID:17350185, PMID:21806946, PMID:23811396, PMID:26268439, PMID:26435691RGDPMID:1406630|PMID:17350185|PMID:21806946|PMID:23811396|PMID:26268439|PMID:26435691
RelaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:Q04206|ensembl:ENSP000003842731600115GO_REF:0000107EnsemblGO_REF:0000107
RelaRatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:Q04207|ensembl:ENSMUSP000000258671600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 93 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RelaRatnuclear factor kappa B signaling pathway   ISORGD:13527612292172 RGD 

Imported Annotations - KEGG (archival)

1 to 20 of 23 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RelaRatacute myeloid leukemia pathway  IEA 6907045 KEGGrno:05221
RelaRatapoptotic cell death pathway  IEA 6907045 KEGGrno:04210
RelaRatB cell receptor signaling pathway  IEA 6907045 KEGGrno:04662
RelaRatceramide signaling pathway  IEA 6907045 KEGGrno:05212
RelaRatChagas disease pathway  IEA 6907045 KEGGrno:05142
RelaRatchemokine mediated signaling pathway  IEA 6907045 KEGGrno:04062
RelaRatchronic myeloid leukemia pathway  IEA 6907045 KEGGrno:05220
RelaRatEntamoebiasis pathway  IEA 6907045 KEGGrno:05146
RelaRathepatitis C pathway  IEA 6907045 KEGGrno:05160
RelaRatinfluenza A pathway  IEA 6907045 KEGGrno:05164
RelaRatLeishmaniasis pathway  IEA 6907045 KEGGrno:05140
RelaRatmeasles pathway  IEA 6907045 KEGGrno:05162
RelaRatmitogen activated protein kinase signaling pathway   IEA 6907045 KEGGrno:04010
RelaRatneurotrophic factor signaling pathway  IEA 6907045 KEGGrno:04722
RelaRatNOD-like receptor signaling pathway  IEA 6907045 KEGGrno:04621
RelaRatpancreatic cancer pathway   IEA 6907045 KEGGrno:05212
RelaRatprostate cancer pathway   IEA 6907045 KEGGrno:05215
RelaRatRetinoic acid-inducible gene (RIG) I-like receptor signaling pathway  IEA 6907045 KEGGrno:04622
RelaRatsmall cell lung carcinoma pathway  IEA 6907045 KEGGrno:05222
RelaRatT cell receptor signaling pathway  IEA 6907045 KEGGrno:04660
1 to 20 of 23 rows

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RelaRatceramide signaling pathway  ISORGD:13527616484113 PIDPID:200119
RelaRatinterleukin-1 signaling pathway   ISORGD:13527616484113 PIDPID:200089
RelaRatinterleukin-12 signaling pathway  ISORGD:13527616484113 PIDPID:200045
RelaRatinterleukin-23 signaling pathway  ISORGD:13527616484113 PIDPID:200154
RelaRatnuclear factor kappa B signaling pathway   ISORGD:13527616484113 PIDPID:200031
RelaRatnuclear factor kappa B signaling pathway   ISORGD:13527616484113 PIDPID:200021
RelaRattumor necrosis factor mediated signaling pathway   ISORGD:13527616484113 PIDPID:200102

1 to 20 of 113 rows
#
Reference Title
Reference Citation
1. The signal transduction pathways involved in hepatic cytochrome P450 regulation in the rat during a lipopolysaccharide-induced model of central nervous system inflammation. Abdulla D, etal., Drug Metab Dispos. 2005 Oct;33(10):1521-31. Epub 2005 Jul 8.
2. Bcl-xL expression and regulation in the progression, recurrence, and cisplatin resistance of oral cancer. Alam M and Mishra R, Life Sci. 2021 Sep 1;280:119705. doi: 10.1016/j.lfs.2021.119705. Epub 2021 Jun 8.
3. Selective up-regulation of I kappaB-alpha in ischemic penumbra following focal cerebral ischemia. Aronowski J, etal., Neuroreport. 2000 May 15;11(7):1529-33.
4. Hyperglycemia and hyperlipidemia blunts the Insulin-Inpp5f negative feedback loop in the diabetic heart. Bai D, etal., Sci Rep. 2016 Feb 24;6:22068. doi: 10.1038/srep22068.
5. Effect of early insulin therapy on nuclear factor kappaB and cytokine gene expressions in the liver and skeletal muscle of high-fat diet, streptozotocin-treated diabetic rats. Bi Y, etal., Acta Diabetol. 2008 May 24.
6. Activation of striatal inflammatory mediators and caspase-3 is central to haloperidol-induced orofacial dyskinesia. Bishnoi M, etal., Eur J Pharmacol. 2008 Jun 14.
7. Tetradecylthioacetic acid prevents the inflammatory response in two-kidney, one-clip hypertension. Bivol LM, etal., Am J Physiol Regul Integr Comp Physiol. 2008 Feb;294(2):R438-47. Epub 2007 Nov 21.
8. Upregulation of nuclear factor-kappaB (NF-kappaB) is related to the grade of cervical intraepithelial neoplasia, but is not an independent predictor of high-risk human papillomavirus or disease outcome in cervical cancer. Branca M, etal., Diagn Cytopathol. 2006 Aug;34(8):555-63.
9. The involvement of NF-kappaB p65/p52 in the effects of GDNF on DA neurons in early PD rats. Cao JP, etal., Brain Res Bull. 2008 Jul 30;76(5):505-11. Epub 2008 Apr 9.
10. Fas-associated death-domain protein inhibits TNF-alpha mediated NF-kappaB activation in cardiomyocytes. Chao W, etal., Am J Physiol Heart Circ Physiol. 2005 Nov;289(5):H2073-80. doi: 10.1152/ajpheart.01216.2004. Epub 2005 Jun 24.
11. Glutamine decreases intestinal nuclear factor kappa B activity and pro-inflammatory cytokine expression after traumatic brain injury in rats. Chen G, etal., Inflamm Res. 2008 Feb;57(2):57-64.
12. Progesterone prevents traumatic brain injury-induced intestinal nuclear factor kappa B activation and proinflammatory cytokines expression in male rats. Chen G, etal., Mediators Inflamm. 2007;2007:93431.
13. Cryptorchidism-induced CFTR down-regulation results in disruption of testicular tight junctions through up-regulation of NF-kappaB/COX-2/PGE2. Chen J, etal., Hum Reprod. 2012 Sep;27(9):2585-97. doi: 10.1093/humrep/des254. Epub 2012 Jul 9.
14. Celecoxib attenuates liver steatosis and inflammation in non-alcoholic steatohepatitis induced by high-fat diet in rats. Chen J, etal., Mol Med Report. 2011 Jun 2. doi: 10.3892/mmr.2011.501.
15. Synergistic activation of NF-kappaB by tumor necrosis factor alpha and gamma interferon via enhanced I kappaB alpha degradation and de novo I kappaBbeta degradation. Cheshire JL and Baldwin AS Jr, Mol Cell Biol. 1997 Nov;17(11):6746-54.
16. Hydrogen peroxide induces the death of astrocytes through the down-regulation of the constitutive nuclear factor-kappaB activity. Choi JJ, etal., Free Radic Res. 2007 May;41(5):555-62.
17. High-throughput sequencing identifies STAT3 as the DNA-associated factor for p53-NF-kappaB-complex-dependent gene expression in human heart failure. Choy MK, etal., Genome Med. 2010 Jun 14;2(6):37. doi: 10.1186/gm158.
18. First evidence of aryl hydrocarbon receptor as a druggable target in hypertension induced by chronic intermittent hypoxia. Coelho NR, etal., Pharmacol Res. 2020 Sep;159:104869. doi: 10.1016/j.phrs.2020.104869. Epub 2020 May 19.
19. Postshock mesenteric lymph induces endothelial NF-kappaB activation. Damle SS, etal., J Surg Res. 2007 Nov;143(1):136-40. Epub 2007 Aug 20.
20. Pentoxifylline attenuates lung injury and modulates transcription factor activity in hemorrhagic shock. Deree J, etal., J Surg Res. 2007 Nov;143(1):99-108.
1 to 20 of 113 rows
1 to 10 of 26 rows
PMID:1406630   PMID:3091258   PMID:3140380   PMID:7603567   PMID:7739562   PMID:7959007   PMID:8246997   PMID:8289784   PMID:8441377   PMID:9120401   PMID:9425125   PMID:9437432  
PMID:10227969   PMID:10498867   PMID:10521409   PMID:10660609   PMID:10747850   PMID:10849440   PMID:11567019   PMID:11931770   PMID:12048232   PMID:12527755   PMID:12598936   PMID:12748188  
PMID:12761501   PMID:12924514   PMID:12947408   PMID:14568984   PMID:14961764   PMID:15220916   PMID:15465828   PMID:15489227   PMID:15616591   PMID:15621209   PMID:15661922   PMID:15665736  
PMID:15684432   PMID:15695822   PMID:15790681   PMID:15793859   PMID:15802625   PMID:15817708   PMID:15845452   PMID:15876188   PMID:15923614   PMID:15944286   PMID:15946255   PMID:15983725  
PMID:15989798   PMID:15994334   PMID:16015706   PMID:16079150   PMID:16115032   PMID:16135962   PMID:16207754   PMID:16230799   PMID:16249387   PMID:16260493   PMID:16306362   PMID:16316526  
PMID:16316997   PMID:16317091   PMID:16322063   PMID:16344406   PMID:16481354   PMID:16513650   PMID:16643855   PMID:16705144   PMID:16707502   PMID:16822942   PMID:16855770   PMID:16875840  
PMID:16908285   PMID:16923814   PMID:17029595   PMID:17041012   PMID:17082476   PMID:17278014   PMID:17320758   PMID:17347452   PMID:17350185   PMID:17396235   PMID:17487688   PMID:17546582  
PMID:17615156   PMID:17785205   PMID:17881497   PMID:17891781   PMID:17935821   PMID:18045535   PMID:18073330   PMID:18074385   PMID:18090225   PMID:18212740   PMID:18279996   PMID:18296632  
PMID:18346469   PMID:18378183   PMID:18505784   PMID:18590796   PMID:18693253   PMID:18703048   PMID:18704302   PMID:18922796   PMID:18986327   PMID:18989778   PMID:19058135   PMID:19067778  
PMID:19111928   PMID:19247578   PMID:19338389   PMID:19404405   PMID:19460707   PMID:19506532   PMID:19551494   PMID:19557165   PMID:19619491   PMID:19887633   PMID:20007738   PMID:20143141  
1 to 10 of 26 rows



Rela
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,354,336 - 212,364,815 (+)NCBIGRCr8
mRatBN7.21202,925,001 - 202,935,484 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,924,945 - 202,935,484 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,277,590 - 211,288,062 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,370,406 - 218,380,885 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,061,451 - 211,071,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,992,770 - 221,003,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,992,770 - 221,003,249 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,928,092 - 227,938,571 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,262,669 - 208,273,148 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,416,121 - 208,426,601 (+)NCBI
Celera1200,460,753 - 200,471,232 (+)NCBICelera
Cytogenetic Map1q43NCBI
RELA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,653,601 - 65,663,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,653,599 - 65,663,090 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,421,072 - 65,431,328 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,178,393 - 65,186,951 (-)NCBINCBI36Build 36hg18NCBI36
Build 341165,178,392 - 65,186,951NCBI
Celera1162,747,772 - 62,757,128 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,748,056 - 61,757,436 (-)NCBIHuRef
CHM1_11165,305,002 - 65,314,374 (-)NCBICHM1_1
T2T-CHM13v2.01165,647,771 - 65,658,027 (-)NCBIT2T-CHM13v2.0
Rela
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,686,993 - 5,698,162 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,687,511 - 5,698,158 (+)EnsemblGRCm39 Ensembl
GRCm38195,637,442 - 5,648,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,637,483 - 5,648,130 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,637,490 - 5,648,130 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,637,490 - 5,648,130 (+)NCBIMGSCv36mm8
Celera195,507,082 - 5,517,707 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Rela
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,603,345 - 19,611,516 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,602,930 - 19,612,263 (+)NCBIChiLan1.0ChiLan1.0
RELA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,883,435 - 66,892,833 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,926,207 - 67,935,595 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,012,839 - 61,022,225 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,347,859 - 64,357,461 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,347,859 - 64,356,868 (-)Ensemblpanpan1.1panPan2
RELA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,550,003 - 51,558,861 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,550,040 - 51,558,875 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,158,512 - 50,167,377 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,587,297 - 52,596,161 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,587,329 - 52,596,159 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,687,144 - 51,696,009 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,261,264 - 51,270,127 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,051,615 - 52,060,481 (+)NCBIUU_Cfam_GSD_1.0
Rela
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,359,432 - 7,368,234 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,801,636 - 3,809,813 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,800,142 - 3,810,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RELA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,593,969 - 6,603,469 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,594,869 - 6,602,684 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,699,452 - 5,707,267 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RELA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,576,059 - 8,585,561 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,576,542 - 8,586,516 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,871,180 - 105,881,402 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rela
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,732,938 - 20,741,272 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,732,813 - 20,742,016 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Rela
24 total Variants

Predicted Target Of
Summary Value
Count of predictions:331
Count of miRNA genes:186
Interacting mature miRNAs:216
Transcripts:ENSRNOT00000045233
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat

1 to 10 of 84 rows
UniSTS:144339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,928,647 - 202,928,735 (+)MAPPERmRatBN7.2
Rnor_6.01220,996,417 - 220,996,504NCBIRnor6.0
Rnor_5.01227,931,739 - 227,931,826UniSTSRnor5.0
RGSC_v3.41208,266,316 - 208,266,403UniSTSRGSC3.4
Celera1200,464,400 - 200,464,487UniSTS
Cytogenetic Map1q43UniSTS
RH131235  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,935,103 - 202,935,323 (+)MAPPERmRatBN7.2
Rnor_6.01221,002,873 - 221,003,092NCBIRnor6.0
Rnor_5.01227,938,195 - 227,938,414UniSTSRnor5.0
RGSC_v3.41208,272,772 - 208,272,991UniSTSRGSC3.4
Celera1200,470,856 - 200,471,075UniSTS
RH 3.4 Map11547.4UniSTS
Cytogenetic Map1q43UniSTS
BF419700  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,923,539 - 202,923,635 (+)MAPPERmRatBN7.2
Rnor_6.01220,991,309 - 220,991,404NCBIRnor6.0
Rnor_5.01227,926,631 - 227,926,726UniSTSRnor5.0
RGSC_v3.41208,261,207 - 208,261,302UniSTSRGSC3.4
Celera1200,459,293 - 200,459,388UniSTS
RH 3.4 Map11550.1UniSTS
Cytogenetic Map1q43UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000045233   ⟹   ENSRNOP00000044552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,924,976 - 202,935,484 (+)Ensembl
Rnor_6.0 Ensembl1220,992,770 - 221,003,249 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096964   ⟹   ENSRNOP00000079173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,925,218 - 202,935,480 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098164   ⟹   ENSRNOP00000088637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,925,218 - 202,935,480 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099757   ⟹   ENSRNOP00000098008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,925,218 - 202,935,480 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100435   ⟹   ENSRNOP00000080281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,924,945 - 202,935,466 (+)Ensembl
RefSeq Acc Id: NM_199267   ⟹   NP_954888
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,354,336 - 212,364,815 (+)NCBI
mRatBN7.21202,925,001 - 202,935,480 (+)NCBI
Rnor_6.01220,992,770 - 221,003,249 (+)NCBI
Rnor_5.01227,928,092 - 227,938,571 (+)NCBI
RGSC_v3.41208,262,669 - 208,273,148 (+)RGD
Celera1200,460,753 - 200,471,232 (+)RGD
Sequence:
RefSeq Acc Id: XM_039079521   ⟹   XP_038935449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81212,355,132 - 212,364,815 (+)NCBI
mRatBN7.21202,925,797 - 202,935,484 (+)NCBI
RefSeq Acc Id: NP_954888   ⟸   NM_199267
- UniProtKB: Q7TQN4 (UniProtKB/TrEMBL),   A0A2Z5ZBL4 (UniProtKB/TrEMBL),   A0A8I6A5H5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000044552   ⟸   ENSRNOT00000045233
RefSeq Acc Id: XP_038935449   ⟸   XM_039079521
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000079173   ⟸   ENSRNOT00000096964
Ensembl Acc Id: ENSRNOP00000098008   ⟸   ENSRNOT00000099757
RHD

Name Modeler Protein Id AA Range Protein Structure
AF-Q7TQN4-F1-model_v2 AlphaFold Q7TQN4 1-550 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690666
Promoter ID:EPDNEW_R1191
Type:initiation region
Name:Rela_1
Description:RELA proto-oncogene, NF-kB subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01220,992,742 - 220,992,802EPDNEW


1 to 40 of 43 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-56666 BioCyc
Ensembl Genes ENSRNOG00000030888 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045233.4 UniProtKB/TrEMBL
  ENSRNOT00000096964.1 UniProtKB/TrEMBL
  ENSRNOT00000098164.1 UniProtKB/TrEMBL
  ENSRNOT00000099757.1 UniProtKB/TrEMBL
  ENSRNOT00000100435 ENTREZGENE
  ENSRNOT00000100435.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  2.60.40.340 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7121610 IMAGE-MGC_LOAD
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_NFkappaB UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  NF_Rel_dor UniProtKB/TrEMBL
  p53-like_TF_DNA-bd UniProtKB/TrEMBL
  RelA UniProtKB/TrEMBL
  RHD UniProtKB/TrEMBL
  RHD_CS UniProtKB/TrEMBL
  RHD_dimer UniProtKB/TrEMBL
  RHD_DNA_bind_dom_sf UniProtKB/TrEMBL
KEGG Report rno:309165 UniProtKB/TrEMBL
MGC_CLONE MGC:95012 IMAGE-MGC_LOAD
NCBI Gene 309165 ENTREZGENE
PANTHER PTHR24169 UniProtKB/TrEMBL
  PTHR24169:SF1 UniProtKB/TrEMBL
Pfam RHD UniProtKB/TrEMBL
  RHD_dimer UniProtKB/TrEMBL
PhenoGen Rela PhenoGen
PRINTS NFKBTNSCPFCT UniProtKB/TrEMBL
PROSITE REL_1 UniProtKB/TrEMBL
  REL_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030888 RatGTEx
SMART IPT UniProtKB/TrEMBL
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
  P53_like_DNA_bnd UniProtKB/TrEMBL
UniProt A0A2Z5ZBL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMV7_RAT UniProtKB/TrEMBL
  A0A8I6A5H5 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 43 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 Rela  RELA proto-oncogene, NF-kB subunit  Rela  v-rel avian reticuloendotheliosis viral oncogene homolog A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-23 Rela  v-rel avian reticuloendotheliosis viral oncogene homolog A  Rela  v-rel reticuloendotheliosis viral oncogene homolog A (avian)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Rela  v-rel reticuloendotheliosis viral oncogene homolog A (avian)      Symbol and Name status set to approved 1299863 APPROVED