Ubb (ubiquitin B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ubb (ubiquitin B) Rattus norvegicus
Analyze
Symbol: Ubb
Name: ubiquitin B
RGD ID: 621562
Description: Predicted to enable protein tag activity and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process; positive regulation of protein monoubiquitination; and protein ubiquitination. Predicted to act upstream of or within several processes, including gonad development; meiosis I; and neuron development. Predicted to be located in mitochondrion; neuron projection; and neuronal cell body. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBB (ubiquitin B); PARTICIPATES IN Parkinson's disease pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Loc192255; polyubiquitin; polyubiquitin-B; UBC; ubiquitin; ubiquitin C
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Ubb-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,746,923 - 47,748,628 (+)NCBIGRCr8
mRatBN7.21047,247,630 - 47,249,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,245,637 - 47,249,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,951,219 - 51,952,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,441,764 - 51,443,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,945,175 - 46,946,881 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,880,231 - 48,881,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,881,049 - 48,881,881 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,664,227 - 48,665,056 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11048,752,613 - 48,753,069NCBI
Celera1046,494,897 - 46,496,578 (+)NCBICelera
Cytogenetic Map10q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3'-diindolylmethane  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroperoxycyclophosphamide  (ISO)
acrylamide  (ISO)
ammonium chloride  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
astaxanthin  (ISO)
Azaspiracid  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cypermethrin  (EXP)
cyproconazole  (ISO)
dinophysistoxin 1  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
enzalutamide  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
imidacloprid  (EXP)
inulin  (ISO)
isoprenaline  (ISO)
Licochalcone B  (ISO)
maneb  (ISO)
manganese(II) chloride  (EXP)
melatonin  (ISO)
menadione  (ISO)
methylisothiazolinone  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
ochratoxin A  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phlorizin  (ISO)
propiconazole  (ISO)
pyrimidifen  (ISO)
pyrogallol  (ISO)
quercetin  (EXP)
raloxifene  (EXP)
resveratrol  (EXP)
rotenone  (ISO)
silicon dioxide  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
thiabendazole  (EXP)
thifluzamide  (ISO)
toluene  (EXP)
trichloroethene  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Nucleotide sequence and expression of the rat polyubiquitin mRNA. Hayashi T, etal., Biochim Biophys Acta 1994 Jun 21;1218(2):232-4.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Gene expressions of ubiquitin and hsp70 following focal ischaemia in rat brain. Noga M, etal., Neuroreport 1997 Mar 24;8(5):1239-41.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8031840   PMID:9074707   PMID:14604964   PMID:15489334   PMID:15632090   PMID:16502470   PMID:17571083   PMID:17634366   PMID:17971410   PMID:18070917   PMID:18299572   PMID:19190083  
PMID:19844237   PMID:20737472   PMID:21630459   PMID:23106098   PMID:23376485   PMID:23533145   PMID:24660806   PMID:29476059  


Genomics

Comparative Map Data
Ubb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,746,923 - 47,748,628 (+)NCBIGRCr8
mRatBN7.21047,247,630 - 47,249,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,245,637 - 47,249,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,951,219 - 51,952,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,441,764 - 51,443,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,945,175 - 46,946,881 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,880,231 - 48,881,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,881,049 - 48,881,881 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,664,227 - 48,665,056 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11048,752,613 - 48,753,069NCBI
Celera1046,494,897 - 46,496,578 (+)NCBICelera
Cytogenetic Map10q23NCBI
UBB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,380,779 - 16,382,745 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,380,798 - 16,382,745 (+)EnsemblGRCh38hg38GRCh38
GRCh371716,284,093 - 16,286,059 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,225,092 - 16,226,779 (+)NCBINCBI36Build 36hg18NCBI36
Build 341716,225,091 - 16,226,779NCBI
Celera1716,187,292 - 16,188,979 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,150,949 - 16,152,636 (+)NCBIHuRef
CHM1_11716,294,106 - 16,295,793 (+)NCBICHM1_1
T2T-CHM13v2.01716,283,097 - 16,285,063 (+)NCBIT2T-CHM13v2.0
Ubb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,442,329 - 62,444,037 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,441,997 - 62,444,039 (+)EnsemblGRCm39 Ensembl
GRCm381162,551,171 - 62,553,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,551,171 - 62,553,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,365,006 - 62,366,714 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,367,697 - 62,369,407 (+)NCBIMGSCv36mm8
Celera1169,470,925 - 69,472,633 (+)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.46NCBI
UBB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,252,196 - 56,254,227 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,063,907 - 61,065,938 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,286,699 - 35,288,429 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,578,715 - 110,580,217 (+)NCBIpanpan1.1PanPan1.1panPan2
UBB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,533,365 - 39,535,120 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,511,426 - 39,535,815 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,679,659 - 39,681,890 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,643,511 - 39,645,744 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,640,787 - 39,645,440 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,615,228 - 39,617,465 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,560,488 - 39,562,718 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,752,689 - 39,754,922 (-)NCBIUU_Cfam_GSD_1.0
Ubb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,569,737 - 59,571,169 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936821241,981 - 243,304 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,171,289 - 59,172,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,171,258 - 59,172,841 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,297,981 - 62,299,561 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,279,271 - 15,289,111 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660595,683,854 - 5,685,836 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,050,188 - 4,051,768 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,050,188 - 4,051,849 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubb
13 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:115
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000066885
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 3 35 29 29 3 29 3 66 27 35 3
Medium 8 28 12 16 12 8 8 8 8 6 8 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001409092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC060312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM053084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM072119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN803398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1048,881,049 - 48,881,881 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117146   ⟹   ENSRNOP00000086005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1047,245,637 - 47,249,333 (+)Ensembl
RefSeq Acc Id: NM_001409092   ⟹   NP_001396021
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,747,181 - 47,748,628 (+)NCBI
mRatBN7.21047,247,888 - 47,249,335 (+)NCBI
RefSeq Acc Id: NM_138895   ⟹   NP_620250
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,746,923 - 47,748,628 (+)NCBI
mRatBN7.21047,247,630 - 47,249,335 (+)NCBI
Rnor_6.01048,880,231 - 48,881,896 (+)NCBI
Rnor_5.01048,664,227 - 48,665,056 (+)NCBI
RGSC_v3.410139,578,694 - 139,579,068 (+)RGD
Celera1046,494,897 - 46,496,578 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_620250   ⟸   NM_138895
- Peptide Label: precursor
- UniProtKB: P0CG51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000086005   ⟸   ENSRNOT00000117146
RefSeq Acc Id: NP_001396021   ⟸   NM_001409092
- UniProtKB: P0CG51 (UniProtKB/Swiss-Prot)
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0CG51-F1-model_v2 AlphaFold P0CG51 1-305 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621562 AgrOrtholog
BioCyc Gene G2FUF-24772 BioCyc
Ensembl Genes ENSRNOG00000042271 Ensembl
  ENSRNOG00000066088 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000117146.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919609 IMAGE-MGC_LOAD
  IMAGE:7104905 IMAGE-MGC_LOAD
  IMAGE:7126996 IMAGE-MGC_LOAD
InterPro Ubiquitin UniProtKB/Swiss-Prot
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/TrEMBL
KEGG Report rno:192255 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72686 IMAGE-MGC_LOAD
  MGC:91487 IMAGE-MGC_LOAD
  MGC:93171 IMAGE-MGC_LOAD
NCBI Gene 192255 ENTREZGENE
PANTHER PTHR10666:SF359 UniProtKB/TrEMBL
  UBIQUITIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN-60S RIBOSOMAL PROTEIN L40 UniProtKB/Swiss-Prot
Pfam ubiquitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ubb PhenoGen
PRINTS UBIQUITIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042271 RatGTEx
  ENSRNOG00000066088 RatGTEx
SMART UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A4W7_RAT UniProtKB/TrEMBL
  A6J0W7_RAT UniProtKB/TrEMBL
  P0CG51 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P02248 UniProtKB/Swiss-Prot
  P02249 UniProtKB/Swiss-Prot
  P02250 UniProtKB/Swiss-Prot
  P62989 UniProtKB/Swiss-Prot
  Q29120 UniProtKB/Swiss-Prot
  Q63446 UniProtKB/Swiss-Prot
  Q91887 UniProtKB/Swiss-Prot
  Q91888 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-25 Ubb  ubiquitin B  Ubb  polyubiquitin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Ubb  polyubiquitin  Loc192255    Symbol and Name updated 1299863 APPROVED
2002-08-07 Loc192255  polyubiquitin      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_regulation mRNA highly induced following ischaemia in the central zone of the middle cerebral artery (MCA) 724407