Tkt (transketolase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Tkt (transketolase) Rattus norvegicus
Analyze
Symbol: Tkt
Name: transketolase
RGD ID: 621036
Description: Enables cation binding activity; monosaccharide binding activity; and transketolase activity. Involved in pentose-phosphate shunt, non-oxidative branch. Located in endoplasmic reticulum membrane and peroxisome. Orthologous to human TKT (transketolase); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; INTERACTS WITH 1,3-dinitrobenzene; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: TK
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,729,381 - 5,755,170 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl165,729,991 - 5,756,431 (+)EnsemblGRCr8
mRatBN7.2165,723,764 - 5,748,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,723,762 - 5,748,698 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx165,735,981 - 5,760,697 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,881,435 - 6,906,151 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,734,559 - 5,759,275 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,609,670 - 6,634,608 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,609,668 - 6,634,595 (+)Ensemblrn6Rnor6.0
Rnor_5.0166,543,529 - 6,568,467 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4165,908,759 - 5,933,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera169,440,328 - 9,465,209 (-)NCBICelera
RGSC_v3.1165,908,756 - 5,933,689 (+)NCBI
Cytogenetic Map16p16NCBI
JBrowse:


Gene Location:16:5729381..5755170

5.730M5.735M5.740M5.745M5.750M5.755M


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRatShort Stature, Developmental Delay, and Congenital Heart Defects  ISOTKT (Homo sapiens)8554872ClinVar Annotator: match by term: TKT-related condition | ClinVar Annotator: match by term: Transketolase deficiencyClinVarPMID:25741868|PMID:27259054|PMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRatAnimal Mammary Neoplasms  ISOTKT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462
TktRatcarcinoma  ISOTKT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462
TktRatExperimental Mammary Neoplasms  ISOTKT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12376462
TktRatHypoxia  ISOTKT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19579223
TktRatNeoplasm Invasiveness  ISOTKT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15654357
TktRatWernicke encephalopathy  ISOTKT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:3762968
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRatShort Stature, Developmental Delay, and Congenital Heart Defects  ISOTKT (Homo sapiens)7240710 OMIM 

1 to 20 of 207 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRat(1->4)-beta-D-glucan multiple interactionsISOTkt (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of TKT mRNACTDPMID:36331819
TktRat1,2-dimethylhydrazine multiple interactionsISOTkt (Mus musculus)6480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TKT mRNACTDPMID:22206623
TktRat1,2-dimethylhydrazine affects expressionISOTkt (Mus musculus)64804641,2-Dimethylhydrazine affects the expression of TKT mRNACTDPMID:22206623
TktRat1,3-dinitrobenzene increases expressionEXP 64804643-dinitrobenzene results in increased expression of TKT mRNACTDPMID:21983209
TktRat1-chloro-2,4-dinitrobenzene increases metabolic processingISOTKT (Homo sapiens)6480464Dinitrochlorobenzene results in increased metabolism of TKT proteinCTDPMID:29267982
TktRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of TKT mRNACTDPMID:30723492
TktRat17alpha-ethynylestradiol increases expressionISOTkt (Mus musculus)6480464Ethinyl Estradiol results in increased expression of TKT mRNACTDPMID:17942748
TktRat17alpha-ethynylestradiol multiple interactionsISOTkt (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TKT mRNACTDPMID:17942748
TktRat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of TKT mRNACTDPMID:26496021
TktRat17beta-estradiol decreases expressionISOTkt (Mus musculus)6480464Estradiol results in decreased expression of TKT mRNACTDPMID:39298647
TktRat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of TKT mRNA; Estradiol results in decreased expression of TKT more ...CTDPMID:32145629
TktRat17beta-estradiol multiple interactionsISOTKT (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of TKT mRNACTDPMID:30165855
TktRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOTkt (Mus musculus)6480464[Tetrachlorodibenzodioxin binds to AHR protein] which results in increased expression of TKT mRNA; [Tetrachlorodibenzodioxin co-treated more ...CTDPMID:16214954|PMID:17942748
TktRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of TKT mRNACTDPMID:33387578
TktRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of TKT mRNACTDPMID:34747641
TktRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTkt (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of TKT mRNACTDPMID:21570461
TktRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of TKT mRNACTDPMID:16054898
TktRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTkt (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of TKT mRNACTDPMID:18796159
TktRat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionEXP 64804642,2',4,4',5-brominated diphenyl ether results in increased expression of TKT proteinCTDPMID:19954255
TktRat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionISOTkt (Mus musculus)64804642,2',4,4',5-brominated diphenyl ether results in increased expression of TKT proteinCTDPMID:18550172

1 to 20 of 207 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRatcytoplasm located_inIEAARBA:ARBA000269711600115GO_REF:0000117UniProtGO_REF:0000117
TktRatcytosol is_active_inISOTkt (Mus musculus)1624291 PMID:5360673RGDPMID:5360673
TktRatendoplasmic reticulum membrane  IDA 1580394 RGD 
TktRatendoplasmic reticulum membrane is_active_inIBAPANTHER:PTN002877174|RGD:6210361600115GO_REF:0000033GO_CentralGO_REF:0000033
TktRatnuclear body located_inISORGD:732645|UniProtKB:P29401-1|UniProtKB:P29401-21624291 RGDGO_REF:0000052
TktRatnucleoplasm located_inISORGD:732645|UniProtKB:P29401-1|UniProtKB:P29401-21624291 RGDGO_REF:0000052
TktRatperoxisome  IDA 1580394 RGD 

Molecular Function
1 to 20 of 20 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRatcalcium ion binding enablesISOTKT (Homo sapiens)1624291 PMID:20667822RGDPMID:20667822
TktRatcarbohydrate binding  IDA 1599574 RGD 
TktRatmagnesium ion binding enablesISOTKT (Homo sapiens)1624291 PMID:9611778RGDPMID:9611778
TktRatmagnesium ion binding  IDA 1580394 RGD 
TktRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
TktRatmonosaccharide binding  IDA 1580394 RGD 
TktRatprotein binding enablesISOTKT (Homo sapiens)1624291UniProtKB:P54274 PMID:21044950RGDPMID:21044950
TktRatprotein homodimerization activity enablesISOTKT (Homo sapiens)1624291 PMID:20667822, PMID:9357955RGDPMID:20667822|PMID:9357955
TktRatthiamine pyrophosphate binding enablesIBAPANTHER:PTN000179046|RGD:6210361600115GO_REF:0000033GO_CentralGO_REF:0000033
TktRatthiamine pyrophosphate binding  IDA 1580394 RGD 
TktRattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
TktRattransketolase activity  IDA 1580394 RGD 
TktRattransketolase activity enablesIEAEC:2.2.1.11600115GO_REF:0000003UniProtGO_REF:0000003
TktRattransketolase activity enablesIBAMGI:105992|PANTHER:PTN000179046|RGD:621036|UniProtKB:P294011600115GO_REF:0000033GO_CentralGO_REF:0000033
TktRattransketolase activity enablesIEARHEA:105081600115GO_REF:0000116RHEAGO_REF:0000116
TktRattransketolase activity enablesIEAARBA:ARBA000877801600115GO_REF:0000117UniProtGO_REF:0000117
TktRattransketolase activity enablesISOTkt (Mus musculus)1624291 PMID:12167708, PMID:5360673RGDPMID:12167708|PMID:5360673
TktRattransketolase activity enablesISOTKT (Homo sapiens)1624291 PMID:20667822, PMID:8419340, PMID:9357955, PMID:9611778RGDPMID:20667822|PMID:8419340|PMID:9357955|PMID:9611778
TktRattransketolase activity  IDA 1624966 RGD 
TktRattransketolase activity  IDA 1599574 RGD 
1 to 20 of 20 rows

RGD Manual Annotations


  

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRatpentose phosphate pathway   ISOTKT (Homo sapiens)10402751 SMPDBSMP:00031
TktRatribose 5-phosphate isomerase deficiency pathway  ISOTKT (Homo sapiens)10402751 SMPDBSMP:00519
TktRattransaldolase deficiency pathway  ISOTKT (Homo sapiens)10402751 SMPDBSMP:00520

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TktRatpentose phosphate pathway   IEA 6907045 KEGGrno:00030

1 to 17 of 17 rows
#
Reference Title
Reference Citation
1. Nucleotide and predicted amino acid sequence of a cDNA clone encoding part of human transketolase. Abedinia M, etal., Biochem Biophys Res Commun 1992 Mar 31;183(3):1159-66.
2. In situ localization of transketolase activity in epithelial cells of different rat tissues and subcellularly in liver parenchymal cells. Boren J, etal., J Histochem Cytochem. 2006 Feb;54(2):191-9. Epub 2005 Aug 22.
3. The pentose phosphate pathway in the endoplasmic reticulum. Bublitz C and Steavenson S, J Biol Chem. 1988 Sep 15;263(26):12849-53.
4. The interdependence of glycolytic and pentose cycle intermediates in ad libitum fed rats. Casazza JP and Veech RL, J Biol Chem. 1986 Jan 15;261(2):690-8.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. GOA pipeline RGD automated data pipeline
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Properties and functions of the thiamin diphosphate dependent enzyme transketolase. Schenk G, etal., Int J Biochem Cell Biol. 1998 Dec;30(12):1297-318.
16. Effect of Anabolic Steroid Nandrolone Decanoate on the Properties of Certain Enzymes in the Heart, Liver, and Muscle of Rats, and their Effect on Rats' Cardiac Electrophysiology. Tylicki A, etal., Horm Metab Res. 2007 Apr;39(4):268-72.
17. A humble hexose monophosphate pathway metabolite regulates short- and long-term control of lipogenesis. Veech RL Proc Natl Acad Sci U S A. 2003 May 13;100(10):5578-80. Epub 2003 Apr 29.
1 to 17 of 17 rows
PMID:8419340   PMID:9357955   PMID:9611778   PMID:12167708   PMID:17634366   PMID:19056867   PMID:19190083   PMID:20458337   PMID:20667822   PMID:22871113   PMID:23376485   PMID:23533145  
PMID:25028661   PMID:33450132  



Tkt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,729,381 - 5,755,170 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl165,729,991 - 5,756,431 (+)EnsemblGRCr8
mRatBN7.2165,723,764 - 5,748,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,723,762 - 5,748,698 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx165,735,981 - 5,760,697 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,881,435 - 6,906,151 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,734,559 - 5,759,275 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,609,670 - 6,634,608 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,609,668 - 6,634,595 (+)Ensemblrn6Rnor6.0
Rnor_5.0166,543,529 - 6,568,467 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4165,908,759 - 5,933,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera169,440,328 - 9,465,209 (-)NCBICelera
RGSC_v3.1165,908,756 - 5,933,689 (+)NCBI
Cytogenetic Map16p16NCBI
TKT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,224,712 - 53,256,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl353,224,712 - 53,256,052 (-)Ensemblhg38GRCh38
GRCh37353,258,728 - 53,290,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,234,704 - 53,264,998 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34353,234,705 - 53,264,998NCBI
Celera353,225,747 - 53,257,192 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,308,475 - 53,339,480 (-)NCBIHuRef
CHM1_1353,210,297 - 53,241,712 (-)NCBICHM1_1
T2T-CHM13v2.0353,257,622 - 53,288,998 (-)NCBIT2T-CHM13v2.0
Tkt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,271,088 - 30,296,681 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,270,316 - 30,296,677 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381430,549,131 - 30,574,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1430,548,359 - 30,574,720 (+)Ensemblmm10GRCm38
MGSCv371431,362,335 - 31,387,908 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361429,378,158 - 29,403,731 (+)NCBIMGSCv36mm8
Celera1426,805,317 - 26,830,435 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1418.79NCBI
Tkt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554303,178,830 - 3,193,345 (-)Ensembl
ChiLan1.0NW_0049554303,178,830 - 3,193,241 (-)NCBIChiLan1.0ChiLan1.0
TKT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2253,207,948 - 53,252,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1353,212,734 - 53,257,204 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0353,168,426 - 53,199,003 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1354,389,549 - 54,420,704 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl354,389,549 - 54,420,704 (-)EnsemblpanPan2panpan1.1
TKT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,690,540 - 36,705,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,681,531 - 36,742,199 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2036,617,359 - 36,642,352 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02036,959,138 - 36,984,142 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,958,981 - 36,984,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,395,903 - 36,420,888 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,757,580 - 36,782,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,972,262 - 36,997,252 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tkt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,812,273 - 170,840,216 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,950,920 - 3,978,672 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,950,846 - 3,978,778 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TKT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,348,915 - 35,377,587 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11335,348,921 - 35,377,518 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,418,457 - 38,447,124 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TKT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,620,340 - 14,650,694 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2214,620,287 - 14,650,655 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041152,245,198 - 152,275,549 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tkt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248223,989,299 - 4,014,269 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248223,989,292 - 4,014,150 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

.

.
Variants in Tkt
199 total Variants

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:30
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000021862
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat

1 to 10 of 26 rows
BE117994  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,747,569 - 5,747,727 (+)MAPPERmRatBN7.2
Rnor_6.0166,633,476 - 6,633,633NCBIRnor6.0
Rnor_5.0166,567,335 - 6,567,492UniSTSRnor5.0
RGSC_v3.4165,932,565 - 5,932,722UniSTSRGSC3.4
Celera169,441,301 - 9,441,458UniSTS
RH 3.4 Map1633.2UniSTS
Cytogenetic Map16p16UniSTS
TKT  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,744,917 - 5,745,156 (+)MAPPERmRatBN7.2
Rnor_6.0166,630,824 - 6,631,062NCBIRnor6.0
Rnor_5.0166,564,683 - 6,564,921UniSTSRnor5.0
RGSC_v3.4165,929,913 - 5,930,151UniSTSRGSC3.4
Cytogenetic Map16p16UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17



Ensembl Acc Id: ENSRNOT00000021862   ⟹   ENSRNOP00000021862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,730,230 - 5,755,157 (+)Ensembl
mRatBN7.2 Ensembl165,723,762 - 5,748,689 (+)Ensembl
Rnor_6.0 Ensembl166,609,668 - 6,634,595 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113496   ⟹   ENSRNOP00000095976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,730,868 - 5,755,159 (+)Ensembl
mRatBN7.2 Ensembl165,724,393 - 5,748,698 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129190   ⟹   ENSRNOP00000104051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,729,991 - 5,755,157 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145038   ⟹   ENSRNOP00000101850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl165,730,819 - 5,756,431 (+)Ensembl
RefSeq Acc Id: NM_022592   ⟹   NP_072114
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,730,232 - 5,755,168 (+)NCBI
mRatBN7.2165,723,764 - 5,748,700 (+)NCBI
Rnor_6.0166,609,670 - 6,634,606 (+)NCBI
Rnor_5.0166,543,529 - 6,568,467 (+)NCBI
RGSC_v3.4165,908,759 - 5,933,695 (+)RGD
Celera169,440,328 - 9,465,209 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252661   ⟹   XP_006252723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8165,729,381 - 5,755,170 (+)NCBI
mRatBN7.2165,724,347 - 5,748,702 (+)NCBI
Rnor_6.0166,610,253 - 6,634,608 (+)NCBI
Rnor_5.0166,543,529 - 6,568,467 (+)NCBI
Sequence:
RefSeq Acc Id: NP_072114   ⟸   NM_022592
- UniProtKB: A6KG34 (UniProtKB/TrEMBL),   G3V826 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252723   ⟸   XM_006252661
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000021862   ⟸   ENSRNOT00000021862
Ensembl Acc Id: ENSRNOP00000095976   ⟸   ENSRNOT00000113496
Ensembl Acc Id: ENSRNOP00000104051   ⟸   ENSRNOT00000129190
Name Modeler Protein Id AA Range Protein Structure
AF-P50137-F1-model_v2 AlphaFold P50137 1-623 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 38 of 38 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-12189 BioCyc
BioCyc Pathway NONOXIPENT-PWY [pentose phosphate pathway (non-oxidative branch) I] BioCyc
BioCyc Pathway Image NONOXIPENT-PWY BioCyc
Ensembl Genes ENSRNOG00000016064 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000129190 ENTREZGENE
  ENSRNOT00000145038 ENTREZGENE
Gene3D-CATH 3.40.50.920 UniProtKB/Swiss-Prot
  3.40.50.970 UniProtKB/Swiss-Prot
InterPro THDP-binding UniProtKB/Swiss-Prot
  Transketo_C/PFOR_II UniProtKB/Swiss-Prot
  Transketolase-like UniProtKB/Swiss-Prot
  Transketolase-like_Pyr-bd UniProtKB/Swiss-Prot
  Transketolase_BS UniProtKB/Swiss-Prot
  Transketolase_C UniProtKB/Swiss-Prot
  Transketolase_CS UniProtKB/Swiss-Prot
  Transketolase_N UniProtKB/Swiss-Prot
KEGG Report rno:64524 UniProtKB/Swiss-Prot
NCBI Gene 64524 ENTREZGENE
PANTHER TRANSKETOLASE UniProtKB/Swiss-Prot
  TRANSKETOLASE UniProtKB/Swiss-Prot
Pfam Transket_pyr UniProtKB/Swiss-Prot
  Transketolase_C UniProtKB/Swiss-Prot
  Transketolase_N UniProtKB/Swiss-Prot
PhenoGen Tkt PhenoGen
PROSITE TRANSKETOLASE_1 UniProtKB/Swiss-Prot
  TRANSKETOLASE_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016064 RatGTEx
SMART Transket_pyr UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52518 UniProtKB/Swiss-Prot
  SSF52922 UniProtKB/Swiss-Prot
UniProt A0A8I6AQ92 ENTREZGENE, UniProtKB/TrEMBL
  A6KG34 ENTREZGENE, UniProtKB/TrEMBL
  A6KG35_RAT UniProtKB/TrEMBL
  A6KG36 ENTREZGENE, UniProtKB/TrEMBL
  A6KG37_RAT UniProtKB/TrEMBL
  A6KG38_RAT UniProtKB/TrEMBL
  G3V826 ENTREZGENE, UniProtKB/TrEMBL
  P50137 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 38 of 38 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Tkt  transketolase      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Tkt  transketolase      Symbol and Name status set to provisional 70820 PROVISIONAL