Map3k1 (mitogen-activated protein kinase kinase kinase 1) - Rat Genome Database

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Gene: Map3k1 (mitogen-activated protein kinase kinase kinase 1) Rattus norvegicus
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Symbol: Map3k1
Name: mitogen-activated protein kinase kinase kinase 1
RGD ID: 620966
Description: Enables several functions, including JUN kinase kinase kinase activity; protein kinase binding activity; and ubiquitin-protein transferase activity. Involved in several processes, including positive regulation of signal transduction; positive regulation of viral transcription; and protein modification process. Predicted to be located in tight junction. Predicted to be part of filamentous actin. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in 46,XY sex reversal 6; breast cancer; gastrointestinal system cancer (multiple); and lung non-small cell carcinoma. Orthologous to human MAP3K1 (mitogen-activated protein kinase kinase kinase 1); PARTICIPATES IN altered Wnt signaling, canonical pathway; adenosine signaling pathway; c-Jun N-terminal kinases MAPK signaling pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100912399; MAPK/ERK kinase kinase 1; MEK kinase 1; MEKK 1; Mekk1; mitogen activated protein kinase kinase kinase 1; mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase; mitogen-activated protein kinase kinase kinase 1-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8245,081,889 - 45,150,555 (-)NCBIGRCr8
mRatBN7.2243,348,572 - 43,414,706 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl243,350,098 - 43,414,463 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx250,464,742 - 50,530,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0248,523,204 - 48,589,428 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0243,374,713 - 43,440,941 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0243,329,516 - 43,393,203 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl243,329,516 - 43,393,207 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0262,373,717 - 62,440,715 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4243,062,252 - 43,126,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1242,987,560 - 43,051,968 (-)NCBI
Celera239,134,930 - 39,199,049 (-)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Map3k1Ratbreast cancer  ISOMAP3K1 (Homo sapiens)2289657 RGD 
Map3k1Ratbreast cancer  ISOMAP3K1 (Homo sapiens)2293356 RGD 
Map3k1Ratbreast cancer disease_progressionISOMAP3K1 (Homo sapiens)2293357 RGD 
Map3k1Ratdiffuse gastric cancer severityISOMAP3K1 (Homo sapiens)150573718DNA:SNP:enhancer: (rs889312) (human)RGD 
Map3k1Ratesophagus squamous cell carcinoma sexual_dimorphismISOMAP3K1 (Homo sapiens)150573717DNA:missense mutation more ...RGD 
Map3k1Rathepatocellular carcinoma exacerbatesISOMAP3K1 (Homo sapiens)150573714mRNA:decreased expression:liver (human)RGD 
Map3k1Ratlung metastasis amelioratesISOMap3k1 (Mus musculus)150573808associated with breast carcinomaRGD 
Map3k1Ratlung non-small cell carcinoma severityISOMAP3K1 (Homo sapiens)150573805DNA:SNPs:5'-UTR more ...RGD 
Map3k1Ratrectum cancer treatmentISOMAP3K1 (Homo sapiens)13217411DNA:SNP:intron: (rs2548663) (human)RGD 
Map3k1Ratrectum cancer susceptibilityISOMAP3K1 (Homo sapiens)150573807DNA:SNP:intron: (rs43184) (human)RGD 
Map3k1Ratstomach cancer susceptibilityISOMAP3K1 (Homo sapiens)150573715DNA:SNP:intron:g.56206570C>G (rs16886448) (human)RGD 
Map3k1Ratstomach cancer exacerbatesISOMAP3K1 (Homo sapiens)150573716DNA:SNP:enhancer: (rs889312) (human)RGD 
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Original Reference(s)
Map3k1Rat46,XY sex reversal 6  ISOMAP3K1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11242112 more ...
Map3k1Ratdisorder of sexual development  ISOMAP3K1 (Homo sapiens)8554872ClinVar Annotator: match by term: Disorder of sexual differentiationClinVar 
Map3k1Ratgenetic disease  ISOMAP3K1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
Map3k1RatHearing Loss  ISOMAP3K1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:28492532 more ...
Map3k1RatHereditary Neoplastic Syndromes  ISOMAP3K1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary cancer-predisposing syndromeClinVarPMID:21129722 more ...
Map3k1RatNeurodevelopmental Disorders  ISOMAP3K1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Map3k1RatOvarian Neoplasms  ISOMAP3K1 (Homo sapiens)8554872ClinVar Annotator: match by term: Ovarian neoplasmClinVar 
Map3k1Ratsyndromic microphthalmia 5  ISOMAP3K1 (Homo sapiens)8554872ClinVar Annotator: match by term: Anophthalmia-microphthalmia syndromeClinVarPMID:26893459
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Original Reference(s)
Map3k1RatBreast Neoplasms  ISOMAP3K1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17529967
Map3k1RatProstatic Neoplasms  ISOMAP3K1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29662167
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Original Reference(s)
Map3k1Rat46,XY sex reversal 6  ISOMAP3K1 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Map3k1Rat(-)-epigallocatechin 3-gallate multiple interactionsISOMAP3K1 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of MAP3K1 mRNACTDPMID:22079256
Map3k1Rat1,2,4-trimethylbenzene decreases expressionEXP 6480464pseudocumene results in decreased expression of MAP3K1 proteinCTDPMID:17337753
Map3k1Rat1-chloro-2,4-dinitrobenzene affects bindingISOMAP3K1 (Homo sapiens)6480464Dinitrochlorobenzene binds to MAP3K1 proteinCTDPMID:32991956
Map3k1Rat17alpha-ethynylestradiol affects expressionISOMap3k1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of MAP3K1 mRNACTDPMID:17555576
Map3k1Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of MAP3K1 mRNACTDPMID:12655037
Map3k1Rat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of MAP3K1 mRNACTDPMID:20170705
Map3k1Rat17beta-estradiol multiple interactionsISOMAP3K1 (Homo sapiens)6480464[Estradiol co-treated with IGF1R mutant form] results in increased expression of MAP3K1 mRNACTDPMID:23094148
Map3k1Rat2,2',4,4',5,5'-hexachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:22889935
Map3k1Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOMap3k1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Map3k1Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOMap3k1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Map3k1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOMap3k1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of MAP3K1 mRNACTDPMID:21570461
Map3k1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of MAP3K1 mRNACTDPMID:33387578
Map3k1Rat2,5-hexanedione increases expressionEXP 64804642 and 5-hexanedione results in increased expression of MAP3K1 proteinCTDPMID:31760062
Map3k1Rat2-methylcholine affects expressionISOMAP3K1 (Homo sapiens)6480464beta-methylcholine affects the expression of MAP3K1 mRNACTDPMID:21179406
Map3k1Rat3-chloropropane-1,2-diol decreases expressionEXP 6480464alpha-Chlorohydrin results in decreased expression of MAP3K1 mRNACTDPMID:28522335
Map3k1Rat4,4'-sulfonyldiphenol increases methylationISOMap3k1 (Mus musculus)6480464bisphenol S results in increased methylation of MAP3K1 exonCTDPMID:33297965
Map3k1Rat4-amino-2,6-dinitrotoluene affects expressionEXP 64804644-amino-2 and 6-dinitrotoluene affects the expression of MAP3K1 mRNACTDPMID:21346803
Map3k1Rat5-fluorouracil affects expressionISOMAP3K1 (Homo sapiens)6480464Fluorouracil affects the expression of MAP3K1 mRNACTDPMID:34151400
Map3k1Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of MAP3K1 mRNACTDPMID:24780913
Map3k1Ratacetamide increases expressionEXP 6480464acetamide results in increased expression of MAP3K1 mRNACTDPMID:31881176

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Biological Process
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Original Reference(s)
Map3k1Ratapoptotic mitochondrial changes acts_upstream_of_or_withinISOMap3k1 (Mus musculus)1624291 PMID:15882989RGDPMID:15882989
Map3k1Ratcamera-type eye development acts_upstream_of_or_withinISOMap3k1 (Mus musculus)1624291MGI:2676654 PMID:12941696RGDPMID:12941696
Map3k1Ratcellular response to mechanical stimulus involved_inISOMAP3K1 (Homo sapiens)1624291 PMID:19593445RGDPMID:19593445
Map3k1Ratcellular response to mechanical stimulus involved_inIEAUniProtKB:Q13233 and ensembl:ENSP000003824231600115GO_REF:0000107EnsemblGO_REF:0000107
Map3k1Ratepithelial cell morphogenesis acts_upstream_of_or_withinISOMap3k1 (Mus musculus)1624291MGI:2676654 PMID:23201579RGDPMID:23201579
Map3k1Rateyelid development in camera-type eye acts_upstream_of_or_withinISOMap3k1 (Mus musculus)1624291MGI:2676654 PMID:23201579 and PMID:25224220RGDPMID:23201579 and PMID:25224220
Map3k1Ratintracellular signal transduction involved_inIEAARBA:ARBA000268871600115GO_REF:0000117UniProtGO_REF:0000117
Map3k1RatJNK cascade acts_upstream_of_or_withinISOMap3k1 (Mus musculus)1624291 PMID:14967141RGDPMID:14967141
Map3k1RatMAPK cascade involved_inIEAGO:00047091600115GO_REF:0000108GOCGO_REF:0000108
Map3k1RatMAPK cascade  IDA 2293488 RGD 
Map3k1Ratmorphogenesis of an epithelial sheet acts_upstream_of_or_withinISOMap3k1 (Mus musculus)1624291MGI:2676654 PMID:25224220RGDPMID:25224220
Map3k1Ratnegative regulation of actin filament bundle assembly  IDA 2293527prevents phenylephrine-induced actin organizationRGD 
Map3k1Ratpeptidyl-serine phosphorylation  IDA 1582177 RGD 
Map3k1Ratpositive regulation of actin filament polymerization acts_upstream_of_or_withinISOMap3k1 (Mus musculus)1624291MGI:2676654 PMID:12941696 and PMID:25224220RGDPMID:12941696 and PMID:25224220
Map3k1Ratpositive regulation of apoptotic process  IMP 2293490 RGD 
Map3k1Ratpositive regulation of canonical Wnt signaling pathway  IMP 150573713 RGD 
Map3k1Ratpositive regulation of DNA-templated transcription  IMP 150573713 RGD 
Map3k1Ratpositive regulation of JNK cascade  IDA 2293488 RGD 
Map3k1Ratpositive regulation of JUN kinase activity involved_inISOMap3k1 (Mus musculus)1624291 PMID:10523642RGDPMID:10523642
Map3k1Ratpositive regulation of JUN kinase activity  IDA 2293488 RGD 
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Cellular Component

  
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Original Reference(s)
Map3k1Ratcytoplasm is_active_inIBAMGI:1344404 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Map3k1Ratfilamentous actin part_ofISOMap3k1 (Mus musculus)1624291 PMID:25224220RGDPMID:25224220
Map3k1Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Map3k1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Map3k1Rattight junction located_inIEAUniProtKB:Q13233 and ensembl:ENSP000003824231600115GO_REF:0000107EnsemblGO_REF:0000107
Map3k1Rattight junction located_inISOMAP3K1 (Homo sapiens)1624291 PMID:24567356RGDPMID:24567356

Molecular Function
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Original Reference(s)
Map3k1RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Map3k1RatATP binding enablesIEAInterPro:IPR000719 and InterPro:IPR0174411600115GO_REF:0000002InterProGO_REF:0000002
Map3k1RatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
Map3k1Ratcytoskeletal protein binding enablesISOMap3k1 (Mus musculus)1624291 PMID:25224220RGDPMID:25224220
Map3k1RatJUN kinase binding  IPIMapk9 (Rattus norvegicus)2293486 RGD 
Map3k1RatJUN kinase kinase kinase activity enablesISOMap3k1 (Mus musculus)1624291 PMID:14967141RGDPMID:14967141
Map3k1RatJUN kinase kinase kinase activity  IDA 2293488 RGD 
Map3k1Ratkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
Map3k1RatMAP kinase kinase activity enablesISOMap3k1 (Mus musculus)1624291 PMID:9065412 and PMID:9078260RGDPMID:9065412 and PMID:9078260
Map3k1RatMAP kinase kinase kinase activity enablesIEAARBA:ARBA000498511600115GO_REF:0000117UniProtGO_REF:0000117
Map3k1RatMAP kinase kinase kinase activity  IDA 2293488 RGD 
Map3k1RatMAP kinase kinase kinase activity  IDA 1582177 RGD 
Map3k1RatMAP kinase kinase kinase activity enablesIEAEC:2.7.11.251600115GO_REF:0000003UniProtGO_REF:0000003
Map3k1Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Map3k1Ratmitogen-activated protein kinase binding  IPIMapk1 (Rattus norvegicus)729224 RGD 
Map3k1Ratmitogen-activated protein kinase kinase binding  IPIMap2k1 (Rattus norvegicus)2293486 RGD 
Map3k1Ratmitogen-activated protein kinase kinase binding  IPIMap2k1 (Mus musculus)1582177 RGD 
Map3k1Ratmitogen-activated protein kinase kinase binding  IPIMap2k7 (Rattus norvegicus)2293486 RGD 
Map3k1Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Map3k1Ratnucleotide binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
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RGD Manual Annotations


  

Imported Annotations - SMPDB

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Original Reference(s)
Map3k1Ratadenosine signaling pathway  ISOMAP3K1 (Homo sapiens)10402751 SMPDBSMP:00320
Map3k1Ratadenosine signaling pathway  ISOMAP3K1 (Homo sapiens)10402751 SMPDBSMP:00321

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)


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#
Reference Title
Reference Citation
1. Direct activation of mitogen-activated protein kinase kinase kinase MEKK1 by the Ste20p homologue GCK and the adapter protein TRAF2. Chadee DN, etal., Mol Cell Biol 2002 Feb;22(3):737-49.
2. Signal transduction mediated by the Ras/Raf/MEK/ERK pathway from cytokine receptors to transcription factors: potential targeting for therapeutic intervention. Chang F, etal., Leukemia 2003 Jul;17(7):1263-93.
3. The MEKK1 PHD ubiquitinates TAB1 to activate MAPKs in response to cytokines. Charlaftis N, etal., EMBO J. 2014 Nov 3;33(21):2581-96. doi: 10.15252/embj.201488351. Epub 2014 Sep 26.
4. MEKK1 controls matrix degradation and tumor cell dissemination during metastasis of polyoma middle-T driven mammary cancer. Cuevas BD, etal., Oncogene. 2006 Aug 17;25(36):4998-5010. doi: 10.1038/sj.onc.1209507. Epub 2006 Mar 27.
5. Genome-wide association study identifies novel breast cancer susceptibility loci. Easton DF, etal., Nature. 2007 Jun 28;447(7148):1087-93.
6. MEK kinases are regulated by EGF and selectively interact with Rac/Cdc42. Fanger GR, etal., EMBO J. 1997 Aug 15;16(16):4961-72.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
9. Establishment of a hepatocellular carcinoma patient-derived xenograft platform and its application in biomarker identification. Hu B, etal., Int J Cancer. 2020 Mar 15;146(6):1606-1617. doi: 10.1002/ijc.32564. Epub 2019 Aug 9.
10. Clinical correlates of low-risk variants in FGFR2, TNRC9, MAP3K1, LSP1 and 8q24 in a Dutch cohort of incident breast cancer cases. Huijts PE, etal., Breast Cancer Res. 2007;9(6):R78.
11. Differential binding of ceramide to MEKK1 in glomerular endothelial and mesangial cells. Huwiler A, etal., Biochim Biophys Acta. 2004 Mar 22;1636(2-3):159-68.
12. The c-jun kinase/stress-activated pathway: regulation, function and role in human disease. Johnson GL and Nakamura K, Biochim Biophys Acta. 2007 Aug;1773(8):1341-8. Epub 2007 Jan 4.
13. Reconstitution of mitogen-activated protein kinase phosphorylation cascades in bacteria. Efficient synthesis of active protein kinases. Khokhlatchev A, etal., J Biol Chem. 1997 Apr 25;272(17):11057-62.
14. Genetic variations in multiple drug action pathways and survival in advanced stage non-small cell lung cancer treated with chemotherapy. Li Y, etal., Clin Cancer Res. 2011 Jun 1;17(11):3830-40. doi: 10.1158/1078-0432.CCR-10-2877.
15. The PHD domain of MEKK1 acts as an E3 ubiquitin ligase and mediates ubiquitination and degradation of ERK1/2. Lu Z, etal., Mol Cell 2002 May;9(5):945-56.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
18. Genes harbouring susceptibility SNPs are differentially expressed in the breast cancer subtypes. Nordgard SH, etal., Breast Cancer Res. 2007;9(6):113.
19. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
20. MEK mediates v-Src-induced disruption of the actin cytoskeleton via inactivation of the Rho-ROCK-LIM kinase pathway. Pawlak G and Helfman DM, J Biol Chem 2002 Jul 26;277(30):26927-33.
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PMID:7997270   PMID:9065412   PMID:9078260   PMID:9639556   PMID:10523642   PMID:12941696   PMID:14967141   PMID:15001576   PMID:15037605   PMID:15189336   PMID:15882989   PMID:16491099  
PMID:17906693   PMID:18308848   PMID:19593445   PMID:21605499   PMID:22993404   PMID:23201579   PMID:25224220   PMID:27662850  



Map3k1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8245,081,889 - 45,150,555 (-)NCBIGRCr8
mRatBN7.2243,348,572 - 43,414,706 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl243,350,098 - 43,414,463 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx250,464,742 - 50,530,977 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0248,523,204 - 48,589,428 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0243,374,713 - 43,440,941 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0243,329,516 - 43,393,203 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl243,329,516 - 43,393,207 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0262,373,717 - 62,440,715 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4243,062,252 - 43,126,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1242,987,560 - 43,051,968 (-)NCBI
Celera239,134,930 - 39,199,049 (-)NCBICelera
Cytogenetic Map2q14NCBI
MAP3K1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38556,815,549 - 56,896,152 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl556,815,549 - 56,896,152 (+)EnsemblGRCh38hg38GRCh38
GRCh37556,111,376 - 56,191,979 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36556,146,657 - 56,227,736 (+)NCBINCBI36Build 36hg18NCBI36
Celera553,065,179 - 53,146,179 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef553,082,897 - 53,163,892 (+)NCBIHuRef
CHM1_1556,113,966 - 56,195,023 (+)NCBICHM1_1
T2T-CHM13v2.0557,643,875 - 57,724,397 (+)NCBIT2T-CHM13v2.0
Map3k1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913111,882,962 - 111,954,803 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13111,882,962 - 111,945,527 (-)EnsemblGRCm39 Ensembl
GRCm3813111,746,428 - 111,818,269 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13111,746,428 - 111,808,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713112,536,641 - 112,599,191 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613112,867,468 - 112,929,861 (-)NCBIMGSCv36mm8
Celera13116,043,507 - 116,076,666 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.36NCBI
Map3k1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544611,021,971 - 11,090,136 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544611,022,091 - 11,090,136 (-)NCBIChiLan1.0ChiLan1.0
MAP3K1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2457,027,936 - 57,108,549 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1555,181,567 - 55,262,180 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0557,116,405 - 57,197,017 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1558,745,573 - 58,826,959 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl558,745,579 - 58,826,959 (-)Ensemblpanpan1.1panPan2
MAP3K1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1243,918,210 - 43,996,817 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl243,917,604 - 43,995,209 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha240,979,535 - 41,058,128 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0244,400,091 - 44,478,773 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl244,400,091 - 44,476,998 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1241,477,057 - 41,555,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0242,280,433 - 42,359,075 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0243,100,342 - 43,179,022 (+)NCBIUU_Cfam_GSD_1.0
Map3k1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213202,144,631 - 202,220,196 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648011,083,605 - 11,156,691 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648011,082,811 - 11,156,691 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP3K1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1635,872,131 - 35,946,987 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11635,872,301 - 35,947,097 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21638,138,087 - 38,212,844 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAP3K1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1453,040,731 - 53,120,784 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl453,084,023 - 53,120,772 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660491,934,475 - 2,010,412 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Map3k1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247592,363,076 - 2,428,273 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247592,360,655 - 2,429,189 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Map3k1
320 total Variants

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:60
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000017968
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)238573329122609194Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat

1 to 10 of 49 rows
REN28005  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,413,750 - 43,413,978 (+)MAPPERmRatBN7.2
Rnor_6.0243,392,495 - 43,392,722NCBIRnor6.0
Rnor_6.0243,999,303 - 43,999,530NCBIRnor6.0
Rnor_5.0263,045,920 - 63,046,147UniSTSRnor5.0
Rnor_5.0262,438,893 - 62,439,120UniSTSRnor5.0
RGSC_v3.4243,125,231 - 43,125,458UniSTSRGSC3.4
Cytogenetic Map2q14UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000017968   ⟹   ENSRNOP00000017968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl243,350,765 - 43,414,463 (-)Ensembl
Rnor_6.0 Ensembl243,329,516 - 43,393,207 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000065473   ⟹   ENSRNOP00000063470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl243,350,765 - 43,413,000 (-)Ensembl
Rnor_6.0 Ensembl243,938,508 - 43,999,107 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114100   ⟹   ENSRNOP00000088035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl243,350,098 - 43,414,463 (-)Ensembl
RefSeq Acc Id: NM_053887   ⟹   NP_446339
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8245,081,889 - 45,148,018 (-)NCBI
mRatBN7.2243,348,572 - 43,414,706 (-)NCBI
Rnor_6.0243,329,516 - 43,393,203 (-)NCBI
Rnor_5.0262,373,717 - 62,440,715 (-)NCBI
RGSC_v3.4243,062,252 - 43,126,058 (-)RGD
Celera239,134,930 - 39,199,049 (-)RGD
Sequence:
RefSeq Acc Id: XM_039101582   ⟹   XP_038957510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8245,081,889 - 45,150,555 (-)NCBI
mRatBN7.2243,348,572 - 43,414,521 (-)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_446339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957510 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52596 (Get FASTA)   NCBI Sequence Viewer  
  AFD32168 (Get FASTA)   NCBI Sequence Viewer  
  EDM10340 (Get FASTA)   NCBI Sequence Viewer  
  EDM10341 (Get FASTA)   NCBI Sequence Viewer  
  EDM10342 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000088035
GenBank Protein Q62925 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_446339   ⟸   NM_053887
- UniProtKB: F1M778 (UniProtKB/TrEMBL),   H9BFG7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017968   ⟸   ENSRNOT00000017968
RefSeq Acc Id: XP_038957510   ⟸   XM_039101582
- Peptide Label: isoform X1
- UniProtKB: F1M778 (UniProtKB/TrEMBL),   H9BFG7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000063470   ⟸   ENSRNOT00000065473
Ensembl Acc Id: ENSRNOP00000088035   ⟸   ENSRNOT00000114100
Protein kinase   RING-type   SWIM-type

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUY5-F1-model_v2 AlphaFold D3ZUY5 1-1302 view protein structure
AF-Q62925-F1-model_v2 AlphaFold Q62925 1-1493 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 44 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-54417 BioCyc
Ensembl Genes ENSRNOG00000013177 Ensembl, ENTREZGENE
  ENSRNOG00000050275 Ensembl
Ensembl Transcript ENSRNOT00000114100 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
  3.30.40.10 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_SWIM UniProtKB/Swiss-Prot
KEGG Report rno:116667 UniProtKB/Swiss-Prot
NCBI Gene 116667 ENTREZGENE
PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 19-RELATED UniProtKB/Swiss-Prot
  SERINE/THREONINE PROTEIN KINASE UniProtKB/Swiss-Prot
Pfam CEP104-like_TOG UniProtKB/Swiss-Prot
  Pkinase UniProtKB/Swiss-Prot
  SWIM UniProtKB/Swiss-Prot
PharmGKB MAP3K1 RGD
PhenoGen Map3k1 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
  ZF_SWIM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013177 RatGTEx
  ENSRNOG00000050275 RatGTEx
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
  SSF48371 UniProtKB/Swiss-Prot
  SSF56112 UniProtKB/Swiss-Prot
UniProt A0A8I6A5B8_RAT UniProtKB/TrEMBL
  A6I5N2_RAT UniProtKB/TrEMBL
  A6I5N4_RAT UniProtKB/TrEMBL
1 to 40 of 44 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Map3k1  mitogen-activated protein kinase kinase kinase 1  LOC100912399  mitogen-activated protein kinase kinase kinase 1-like  Data merged from RGD:6487511 737654 PROVISIONAL
2016-03-22 Map3k1  mitogen-activated protein kinase kinase kinase 1  Map3k1  mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-12-02 Map3k1  mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase  Map3k1  mitogen activated protein kinase kinase kinase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912399  mitogen-activated protein kinase kinase kinase 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Map3k1  mitogen activated protein kinase kinase kinase 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Map3k1  mitogen activated protein kinase kinase kinase 1      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_domains contains a PHD domain that has E3 ubiquitin ligase activity 729224
gene_process an upstream activator of the ERK and JNK through its kinase domain 729224