Pgk1 (phosphoglycerate kinase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pgk1 (phosphoglycerate kinase 1) Rattus norvegicus
Analyze
Symbol: Pgk1
Name: phosphoglycerate kinase 1
RGD ID: 619878
Description: Enables ADP binding activity; ATP binding activity; and phosphoglycerate kinase activity. Involved in gluconeogenesis and glycolytic process. Predicted to be located in extracellular space; membrane raft; and mitochondrial matrix. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in hemolytic anemia and phosphoglycerate kinase 1 deficiency. Orthologous to human PGK1 (phosphoglycerate kinase 1); PARTICIPATES IN gluconeogenesis pathway; glycolysis pathway; hypoxia inducible factor pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC105265; Pgk
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X75,336,988 - 75,352,962 (+)NCBIGRCr8
mRatBN7.2X71,271,454 - 71,287,429 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX71,271,440 - 71,287,418 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX72,780,371 - 72,796,345 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X76,280,383 - 76,296,357 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X73,843,195 - 73,859,169 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X77,263,399 - 77,279,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX77,263,359 - 77,279,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X56,383,459 - 56,399,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X94,324,219 - 94,340,193 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X94,397,574 - 94,413,625 (+)NCBI
CeleraX72,583,654 - 72,599,628 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Rathemolytic anemia  ISOPGK1 (Homo sapiens)1599123 RGD 
1 to 12 of 12 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Ratalpha thalassemia-X-linked intellectual disability syndrome  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Alpha thalassemia-X-linked intellectual disability syndromeClinVarPMID:28492532
Pgk1Ratautistic disorder  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Pgk1Ratautosomal hemophilia A  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Pgk1Ratfactor VIII deficiency  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Pgk1Ratgeneralized epilepsy  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVarPMID:25741868
Pgk1Ratgenetic disease  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:23934111 more ...
Pgk1RatMenkes disease  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Menkes kinky-hair syndromeClinVarPMID:28492532
Pgk1Ratoptic atrophy  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Optic atrophyClinVarPMID:25741868 and PMID:28492532
Pgk1Ratphosphoglycerate kinase 1 deficiency  ISOPGK1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10809925 more ...
Pgk1Ratsyndromic X-linked intellectual disability Lubs type  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
Pgk1RatX-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection, and neoplasia  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: X-linked immunodeficiency with magnesium defect and Epstein-Barr virus infection and neoplasiaClinVarPMID:28492532
Pgk1RatYoung Syndrome  ISOPGK1 (Homo sapiens)8554872ClinVar Annotator: match by term: Male infertility due to obstructive azoospermiaClinVar 
1 to 12 of 12 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Rathepatocellular carcinoma  ISOPGK1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21472284
Pgk1Ratphosphoglycerate kinase 1 deficiency  ISOPGK1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Pgk1Ratrenal cell carcinoma  ISOPGK1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15108329
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Ratphosphoglycerate kinase 1 deficiency  ISOPGK1 (Homo sapiens)7240710 OMIM 

1 to 20 of 261 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Rat(-)-epigallocatechin 3-gallate increases expressionISOPGK1 (Homo sapiens)6480464epigallocatechin gallate results in increased expression of PGK1 proteinCTDPMID:31195006
Pgk1Rat(R,R,R)-alpha-tocopherol multiple interactionsISOPGK1 (Homo sapiens)6480464alpha-Tocopherol inhibits the reaction [Hydrogen Peroxide results in increased expression of PGK1 protein]CTDPMID:18603805
Pgk1Rat(Z)-3-butylidenephthalide decreases expressionISOPGK1 (Homo sapiens)6480464butylidenephthalide results in decreased expression of PGK1 proteinCTDPMID:23770345
Pgk1Rat1,10-phenanthroline increases expressionISOPGK1 (Homo sapiens)64804641 and 10-phenanthroline results in increased expression of PGK1 mRNACTDPMID:19502547
Pgk1Rat1,2,4-trimethylbenzene decreases expressionEXP 6480464pseudocumene results in decreased expression of PGK1 proteinCTDPMID:17337753
Pgk1Rat1,2-dimethylhydrazine decreases expressionISOPgk1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of PGK1 mRNACTDPMID:22206623
Pgk1Rat1,2-dimethylhydrazine multiple interactionsISOPgk1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of PGK1 mRNACTDPMID:22206623
Pgk1Rat1,4-benzoquinone increases expressionISOPGK1 (Homo sapiens)6480464quinone results in increased expression of PGK1 proteinCTDPMID:30448556
Pgk1Rat1,4-benzoquinone multiple interactionsISOPGK1 (Homo sapiens)6480464[HIF1A protein co-treated with quinone] results in increased expression of PGK1 proteinCTDPMID:30448556
Pgk1Rat17alpha-ethynylestradiol increases expressionISOPgk1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of PGK1 mRNACTDPMID:16174780 and PMID:19400957
Pgk1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of PGK1 mRNACTDPMID:12075121 more ...
Pgk1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of PGK1 mRNACTDPMID:32145629
Pgk1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPgk1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PGK1 mRNACTDPMID:15667827
Pgk1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of PGK1 mRNACTDPMID:34747641
Pgk1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPGK1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of PGK1 mRNACTDPMID:23152189
Pgk1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOPGK1 (Homo sapiens)64804642-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of PGK1 mRNA] and alpha-naphthoflavone inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of PGK1 mRNA]CTDPMID:23152189
Pgk1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPgk1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PGK1 mRNACTDPMID:21570461
Pgk1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PGK1 mRNACTDPMID:16466705 and PMID:21215274
Pgk1Rat2,6-di-tert-butyl-4-methylphenol multiple interactionsISOPGK1 (Homo sapiens)6480464Butylated Hydroxytoluene inhibits the reaction [Hydrogen Peroxide results in increased expression of PGK1 protein]CTDPMID:18603805
Pgk1Rat2,6-dimethoxyphenol multiple interactionsISOPGK1 (Homo sapiens)6480464[pyrogallol 1 more ...CTDPMID:38598786

1 to 20 of 261 rows

Biological Process
1 to 20 of 29 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Ratcanonical glycolysis involved_inIEAUniProtKB:P09411 and ensembl:ENSMUSP000000803021600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratcanonical glycolysis involved_inISOPgk1 (Mus musculus)1624291MGI:3780541 PMID:30174313RGDPMID:30174313
Pgk1Ratcellular response to hypoxia involved_inISOPGK1 (Homo sapiens)1624291 PMID:11130727RGDPMID:11130727
Pgk1Ratcellular response to hypoxia involved_inIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratepithelial cell differentiation involved_inISOPGK1 (Homo sapiens)1624291 PMID:21492153RGDPMID:21492153
Pgk1Ratepithelial cell differentiation involved_inIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratgluconeogenesis  IMP 2302860 RGD 
Pgk1Ratgluconeogenesis involved_inIEAUniProtKB:P09411 and ensembl:ENSMUSP000000803021600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratgluconeogenesis involved_inISOPgk1 (Mus musculus)1624291MGI:106918 PMID:19643083RGDPMID:19643083
Pgk1Ratgluconeogenesis involved_inIBAMGI:97555 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pgk1Ratgluconeogenesis  IDA 2302795 RGD 
Pgk1Ratglycolytic process  IDA 2302859 RGD 
Pgk1Ratglycolytic process involved_inIEAInterPro:IPR001576 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Pgk1Ratglycolytic process acts_upstream_of_or_withinIEAUniProtKB:P09411 and ensembl:ENSMUSP000000803021600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratglycolytic process involved_inIEAInterPro:IPR001576 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Pgk1Ratglycolytic process involved_inIEAUniProtKB-KW:KW-03241600115GO_REF:0000043UniProtGO_REF:0000043
Pgk1Ratglycolytic process acts_upstream_of_or_withinISOPgk1 (Mus musculus)1624291 PMID:15665293RGDPMID:15665293
Pgk1Ratglycolytic process involved_inIEAARBA:ARBA000350551600115GO_REF:0000117UniProtGO_REF:0000117
Pgk1Ratglycolytic process involved_inIBAFB:FBgn0250906 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pgk1Ratglycolytic process involved_inIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 29 rows

Cellular Component
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Pgk1Ratcytosol located_inISSUniProtKB:P005581600115GO_REF:0000024UniProtGO_REF:0000024
Pgk1Ratcytosol located_inIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratcytosol is_active_inIEAUniProtKB:P09411 and ensembl:ENSMUSP000000803021600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratcytosol is_active_inISOPgk1 (Mus musculus)1624291 PMID:33274589 and PMID:4262895RGDPMID:33274589 and PMID:4262895
Pgk1Ratcytosol is_active_inIBAMGI:97555 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pgk1Ratcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044
Pgk1Ratcytosol located_inISOPGK1 (Homo sapiens)1624291 PMID:36849569RGDPMID:36849569
Pgk1Ratextracellular space located_inISOPGK1 (Homo sapiens)1624291 PMID:11130727RGDPMID:11130727
Pgk1Ratextracellular space located_inIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratmembrane raft located_inISOPGK1 (Homo sapiens)1624291 PMID:25204797RGDPMID:25204797
Pgk1Ratmembrane raft located_inIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratmitochondrial matrix located_inISSUniProtKB:P005581600115GO_REF:0000024UniProtGO_REF:0000024
Pgk1Ratmitochondrial matrix located_inIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratmitochondrial matrix located_inIEAUniProtKB-SubCell:SL-01701600115GO_REF:0000044UniProtGO_REF:0000044
Pgk1Ratmitochondrial matrix located_inISOPGK1 (Homo sapiens)1624291 PMID:26942675 and PMID:36849569RGDPMID:26942675 and PMID:36849569
Pgk1Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
1 to 17 of 17 rows

Molecular Function
1 to 20 of 33 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1RatADP binding  IDA 2302859 RGD 
Pgk1RatADP binding enablesIBAPANTHER:PTN000150497 and Pgk1 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pgk1RatATP binding  IMP 2302860 RGD 
Pgk1RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Pgk1RatATP binding enablesIBAPANTHER:PTN000150497 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pgk1RatATP binding enablesISSUniProtKB:P005591600115GO_REF:0000024UniProtGO_REF:0000024
Pgk1Ratkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
Pgk1Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Pgk1Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Pgk1Ratphosphoglycerate kinase activity  IDA 2302859 RGD 
Pgk1Ratphosphoglycerate kinase activity enablesIEAUniProtKB:P00558 and ensembl:ENSP000003624131600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratphosphoglycerate kinase activity enablesIEARHEA:148011600115GO_REF:0000116RHEAGO_REF:0000116
Pgk1Ratphosphoglycerate kinase activity enablesIEAUniProtKB:P09411 and ensembl:ENSMUSP000000803021600115GO_REF:0000107EnsemblGO_REF:0000107
Pgk1Ratphosphoglycerate kinase activity enablesIEAInterPro:IPR001576 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Pgk1Ratphosphoglycerate kinase activity enablesISOPgk1 (Mus musculus)1624291 PMID:17248765 more ...RGDPMID:17248765 more ...
Pgk1Ratphosphoglycerate kinase activity enablesIBAMGI:97555 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pgk1Ratphosphoglycerate kinase activity enablesIEAEC:2.7.2.31600115GO_REF:0000003UniProtGO_REF:0000003
Pgk1Ratphosphoglycerate kinase activity enablesIEAInterPro:IPR001576 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Pgk1Ratphosphoglycerate kinase activity enablesISOPGK1 (Homo sapiens)1624291 PMID:1278465 more ...RGDPMID:1278465 more ...
Pgk1Ratphosphoglycerate kinase activity enablesIEAARBA:ARBA000350661600115GO_REF:0000117UniProtGO_REF:0000117
1 to 20 of 33 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Ratgluconeogenesis pathway   IDA 2302795 RGD 
Pgk1Ratgluconeogenesis pathway   IMP 2302860 RGD 
Pgk1Ratglycolysis pathway   IMP 2302860 RGD 
Pgk1Ratglycolysis pathway   IDA 2302859 RGD 

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Ratlamivudine pharmacokinetics pathway  ISOPGK1 (Homo sapiens)10402751 SMPDBSMP:00649

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Ratgluconeogenesis pathway   IEA 6907045 KEGGrno:00010
Pgk1Ratglycolysis pathway   IEA 6907045 KEGGrno:00010
Pgk1Ratglycolysis/gluconeogenesis pathway  IEA 6907045 KEGGrno:00010

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pgk1Rathypoxia inducible factor pathway   ISOPGK1 (Homo sapiens)6484113 PIDPID:200202
Pgk1Rathypoxia inducible factor pathway   ISOPGK1 (Homo sapiens)6484113 PIDPID:200036

1 to 18 of 18 rows
#
Reference Title
Reference Citation
1. Key enzymes of carbohydrate metabolism as targets of the 11.5-kDa Zn(2+)-binding protein (parathymosin). Brand IA and Heinickel A, J Biol Chem. 1991 Nov 5;266(31):20984-9.
2. Cloning and cDNA sequence of the rat X-chromosome linked phosphoglycerate kinase. Ciccarese S, etal., Biochem Biophys Res Commun 1989 Dec 29;165(3):1337-44.
3. Phosphoglycerate kinase deficiency: another cause of recurrent myoglobinuria. DiMauro S, etal., Ann Neurol. 1983 Jan;13(1):11-9.
4. The identification of a recurrent phosphoglycerate kinase mutation associated with chronic haemolytic anaemia and neurological dysfunction in a family from USA. Flanagan JM, etal., Br J Haematol. 2006 Jul;134(2):233-7. Epub 2006 Jun 1.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
7. Influence of beta,gamma-methyleneadenosine 5'-triphosphate and 2-phosphoglycerate on rat liver phosphoglycerate kinase. Lavoinne A Biochimie. 1986 Apr;68(4):569-74.
8. Kinetic studies of the reaction mechanism of rat liver phosphoglycerate kinase in the direction of ADP utilization. Lavoinne A, etal., Biochimie. 1983 Mar;65(3):211-20.
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
14. GOA pipeline RGD automated data pipeline
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Monochloroacetic acid inhibits liver gluconeogenesis by inactivating glyceraldehyde-3-phosphate dehydrogenase. Sakai A, etal., Chem Res Toxicol. 2005 Feb;18(2):277-82.
18. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
1 to 18 of 18 rows
PMID:943046   PMID:5009693   PMID:6852525   PMID:7391028   PMID:11130727   PMID:11487543   PMID:15277470   PMID:15489334   PMID:15665293   PMID:17248765   PMID:19199708   PMID:19946888  
PMID:20458337   PMID:21492153   PMID:22082260   PMID:22420779   PMID:22871113   PMID:23376485   PMID:23533145   PMID:23904609   PMID:25204797   PMID:26316108   PMID:29476059   PMID:32357304  
PMID:36749430   PMID:37249790   PMID:37258131   PMID:37295596  



Pgk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X75,336,988 - 75,352,962 (+)NCBIGRCr8
mRatBN7.2X71,271,454 - 71,287,429 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX71,271,440 - 71,287,418 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX72,780,371 - 72,796,345 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X76,280,383 - 76,296,357 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X73,843,195 - 73,859,169 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X77,263,399 - 77,279,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX77,263,359 - 77,279,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X56,383,459 - 56,399,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X94,324,219 - 94,340,193 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X94,397,574 - 94,413,625 (+)NCBI
CeleraX72,583,654 - 72,599,628 (+)NCBICelera
Cytogenetic MapXq22NCBI
PGK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X78,104,248 - 78,129,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX77,910,739 - 78,129,295 (+)EnsemblGRCh38hg38GRCh38
GRCh37X77,359,745 - 77,384,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X77,246,425 - 77,268,980 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X77,165,913 - 77,188,467NCBI
CeleraX77,600,747 - 77,623,405 (+)NCBICelera
Cytogenetic MapXq21.1NCBI
HuRefX70,945,945 - 70,968,603 (+)NCBIHuRef
CHM1_1X77,252,363 - 77,275,021 (+)NCBICHM1_1
T2T-CHM13v2.0X76,539,329 - 76,564,376 (+)NCBIT2T-CHM13v2.0
Pgk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X105,230,706 - 105,247,305 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX105,230,706 - 105,247,305 (+)EnsemblGRCm39 Ensembl
GRCm38X106,187,100 - 106,203,699 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX106,187,100 - 106,203,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X103,382,463 - 103,399,038 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X102,389,843 - 102,406,418 (+)NCBIMGSCv36mm8
CeleraX93,040,533 - 93,057,028 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX47.36NCBI
Pgk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555571,566,534 - 1,584,799 (+)NCBIChiLan1.0ChiLan1.0
PGK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X77,679,278 - 77,701,483 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X77,682,484 - 77,708,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X67,280,269 - 67,302,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X77,391,639 - 77,413,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX77,391,805 - 77,414,459 (+)Ensemblpanpan1.1panPan2
PGK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X60,374,743 - 60,396,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX60,374,754 - 60,423,947 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX51,387,842 - 51,409,348 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X61,613,473 - 61,634,977 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX61,613,477 - 61,690,699 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X59,319,607 - 59,341,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X60,929,381 - 60,951,098 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X60,517,684 - 60,539,186 (+)NCBIUU_Cfam_GSD_1.0
Pgk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X53,965,864 - 53,989,650 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936547286,267 - 310,062 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936547286,267 - 310,062 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX62,187,434 - 62,210,705 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X62,187,472 - 62,210,321 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X71,339,754 - 71,351,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXq1.2NCBI
PGK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X67,072,029 - 67,093,881 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606714,418,994 - 14,440,951 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pgk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248362,653,474 - 2,676,766 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248362,657,320 - 2,676,124 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Pgk1
12 total Variants

Predicted Target Of
Summary Value
Count of predictions:282
Count of miRNA genes:186
Interacting mature miRNAs:211
Transcripts:ENSRNOT00000003390
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

AA892797  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map2206.3UniSTS
Cytogenetic MapXq31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000077604   ⟹   ENSRNOP00000073523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX71,271,440 - 71,287,418 (+)Ensembl
Rnor_6.0 EnsemblX77,263,359 - 77,279,367 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085653   ⟹   ENSRNOP00000073614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX71,277,726 - 71,287,418 (+)Ensembl
Rnor_6.0 EnsemblX77,278,240 - 77,279,367 (+)Ensembl
RefSeq Acc Id: NM_053291   ⟹   NP_445743
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X75,336,988 - 75,352,962 (+)NCBI
mRatBN7.2X71,271,454 - 71,287,429 (+)NCBI
Rnor_6.0X77,263,399 - 77,279,373 (+)NCBI
Rnor_5.0X56,383,459 - 56,399,433 (+)NCBI
RGSC_v3.4X94,324,219 - 94,340,193 (+)RGD
CeleraX72,583,654 - 72,599,628 (+)RGD
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_445743 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41838 (Get FASTA)   NCBI Sequence Viewer  
  AAH63161 (Get FASTA)   NCBI Sequence Viewer  
  AAH87651 (Get FASTA)   NCBI Sequence Viewer  
  CBN64618 (Get FASTA)   NCBI Sequence Viewer  
  EDM07137 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073523.1
  ENSRNOP00000073614
GenBank Protein P16617 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_445743   ⟸   NM_053291
- UniProtKB: Q5M945 (UniProtKB/Swiss-Prot),   Q6P508 (UniProtKB/Swiss-Prot),   P16617 (UniProtKB/Swiss-Prot),   A6IV43 (UniProtKB/TrEMBL),   A0A096MJL6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073614   ⟸   ENSRNOT00000085653
Ensembl Acc Id: ENSRNOP00000073523   ⟸   ENSRNOT00000077604

Name Modeler Protein Id AA Range Protein Structure
AF-P16617-F1-model_v2 AlphaFold P16617 1-417 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701902
Promoter ID:EPDNEW_R12426
Type:initiation region
Name:Pgk1_1
Description:phosphoglycerate kinase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X77,263,359 - 77,263,419EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-1918 BioCyc
BioCyc Pathway ANAGLYCOLYSIS-PWY [glycolysis III (from glucose)] BioCyc
  PWY66-399 [gluconeogenesis III] BioCyc
BioCyc Pathway Image ANAGLYCOLYSIS-PWY BioCyc
  PWY66-399 BioCyc
Ensembl Genes ENSRNOG00000058249 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000077604.2 UniProtKB/Swiss-Prot
  ENSRNOT00000085653 ENTREZGENE
Gene3D-CATH 3.40.50.1260 UniProtKB/Swiss-Prot
InterPro Phosphoglycerate_kinase UniProtKB/Swiss-Prot
  Phosphoglycerate_kinase_CS UniProtKB/Swiss-Prot
  Phosphoglycerate_kinase_N UniProtKB/Swiss-Prot
  Phosphoglycerate_kinase_sf UniProtKB/Swiss-Prot
KEGG Report rno:24644 UniProtKB/Swiss-Prot
NCBI Gene 24644 ENTREZGENE
PANTHER PHOSPHOGLYCERATE KINASE 1 UniProtKB/Swiss-Prot
  PTHR11406 UniProtKB/Swiss-Prot
Pfam PGK UniProtKB/Swiss-Prot
PhenoGen Pgk1 PhenoGen
PIRSF Pgk UniProtKB/Swiss-Prot
PRINTS PHGLYCKINASE UniProtKB/Swiss-Prot
PROSITE PGLYCERATE_KINASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000058249 RatGTEx
Superfamily-SCOP SSF53748 UniProtKB/Swiss-Prot
UniProt A0A096MJL6 ENTREZGENE, UniProtKB/TrEMBL
  A6IV43 ENTREZGENE, UniProtKB/TrEMBL
  P16617 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5M945 ENTREZGENE
  Q6P508 ENTREZGENE
UniProt Secondary Q5M945 UniProtKB/Swiss-Prot
  Q6P508 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Pgk1  phosphoglycerate kinase 1      Symbol and Name updated 629477 APPROVED
2003-03-06 Pgk1  phosphoglycerate kinase 1  Pgk  Phosphoglycerate kinase 1  Data merged from RGD:3315 628472 PROVISIONAL
2002-08-07 Pgk1        Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Pgk  Phosphoglycerate kinase 1      Symbol and Name status set to approved 70586 APPROVED