Prkce (protein kinase C, epsilon) - Rat Genome Database

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Gene: Prkce (protein kinase C, epsilon) Rattus norvegicus
Analyze
Symbol: Prkce
Name: protein kinase C, epsilon
RGD ID: 61925
Description: Enables several functions, including SH3 domain binding activity; diacylglycerol-dependent, calcium-independent serine/threonine kinase activity; and protein serine/threonine kinase binding activity. Involved in several processes, including cellular response to platelet-derived growth factor stimulus; negative regulation of mitochondrial calcium ion concentration; and negative regulation of mitochondrial membrane potential. Located in Golgi membrane and T-tubule. Is active in glutamatergic synapse; neuromuscular junction; and presynaptic cytosol. Used to study hypertension. Biomarker of type 2 diabetes mellitus. Orthologous to human PRKCE (protein kinase C epsilon); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; interleukin-2 signaling pathway; INTERACTS WITH (R)-adrenaline; (S)-nicotine; 1,1-dichloroethene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: nPKC-epsilon; Pkce; protein kinase C epsilon type
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8613,718,050 - 14,204,931 (-)NCBIGRCr8
mRatBN7.267,965,048 - 8,451,966 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl67,965,048 - 8,451,719 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx68,241,962 - 8,728,298 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.068,551,358 - 9,037,685 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.068,078,663 - 8,564,995 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.069,483,400 - 9,973,396 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl69,790,422 - 9,973,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.069,404,548 - 9,883,579 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.469,631,234 - 10,097,311 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.169,631,241 - 10,097,311 (+)NCBI
Celera67,696,161 - 8,179,574 (-)NCBICelera
Cytogenetic Map6q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
PrkceRatCardiomegaly  IAGP 1581271 RGD 
PrkceRathypertension  IAGP 1581271 RGD 
PrkceRatmyocardial infarction  ISOPrkce (Mus musculus)155882580RNA:decreased expression:myocardium:RGD 
PrkceRattype 2 diabetes mellitus  IEP 13506804mRNA and protein:decreased expression:liver:RGD 
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Original Reference(s)
PrkceRatLynch syndrome  ISOPRKCE (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasmsClinVarPMID:28492532
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Original Reference(s)
PrkceRatcardiomyopathy  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15242976
PrkceRatColorectal Neoplasms  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:7705931
PrkceRatcoronary stenosis  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16782078
PrkceRatDiabetic Nephropathies  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20665664
PrkceRatExperimental Diabetes Mellitus  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:12198386
PrkceRatHyperalgesia  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11738263 more ...
PrkceRatLiver Neoplasms  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19233941
PrkceRatmetabolic dysfunction-associated steatotic liver disease  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29341352
PrkceRatmyocardial infarction  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:16782078
PrkceRatMyocardial Ischemia  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16214533
PrkceRatperipheral nervous system disease  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20726883
PrkceRatsubstance-related disorder  ISOPRKCE (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20098672
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Original Reference(s)
PrkceRat(R)-adrenaline affects response to substanceISOPrkce (Mus musculus)6480464PRKCE protein affects the susceptibility to EpinephrineCTDPMID:11454025
PrkceRat(R)-adrenaline affects response to substanceEXP 6480464PRKCE protein affects the susceptibility to EpinephrineCTDPMID:11454025
PrkceRat(S)-nicotine increases expressionEXP 6480464Nicotine results in increased expression of PRKCE mRNACTDPMID:20426880
PrkceRat1,1-dichloroethene increases expressionEXP 6480464vinylidene chloride results in increased expression of PRKCE proteinCTDPMID:14565772
PrkceRat1,2-dimethylhydrazine decreases expressionISOPrkce (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of PRKCE mRNACTDPMID:22206623
PrkceRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of PRKCE mRNACTDPMID:12075121 and PMID:29097150
PrkceRat17beta-estradiol increases expressionISOPrkce (Mus musculus)6480464Estradiol results in increased expression of PRKCE mRNACTDPMID:25210133
PrkceRat17beta-estradiol multiple interactionsISOPRKCE (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of PRKCE mRNA and Estradiol promotes the reaction [HSF protein binds to PRKCE promoter]CTDPMID:30165855 and PMID:31614463
PrkceRat17beta-estradiol increases expressionISOPRKCE (Homo sapiens)6480464Estradiol results in increased expression of PRKCE mRNACTDPMID:21795739 and PMID:31614463
PrkceRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOPrkce (Mus musculus)6480464[2 more ...CTDPMID:25510870
PrkceRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:21394737
PrkceRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOPrkce (Mus musculus)6480464[2 more ...CTDPMID:25510870
PrkceRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin binds to AHR protein] which affects the localization of PRKCE proteinCTDPMID:15761253
PrkceRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PRKCE mRNACTDPMID:33387578
PrkceRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPrkce (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PRKCE mRNACTDPMID:32553695
PrkceRat2,3,7,8-tetrachlorodibenzodioxine increases localizationEXP 6480464Tetrachlorodibenzodioxin results in increased localization of PRKCE proteinCTDPMID:17222441
PrkceRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects localizationISOPRKCE (Homo sapiens)64804642 more ...CTDPMID:15475174
PrkceRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of PRKCE mRNACTDPMID:21346803
PrkceRat2-butoxyethanol decreases expressionISOPrkce (Mus musculus)6480464n-butoxyethanol results in decreased expression of PRKCE mRNACTDPMID:19812364
PrkceRat3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione multiple interactionsISOPrkce (Mus musculus)6480464bisindolylmaleimide I inhibits the reaction [Tetradecanoylphorbol Acetate promotes the reaction [PRKCE protein binds to STAT3 protein]]CTDPMID:24496235

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Biological Process
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Original Reference(s)
PrkceRatcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
PrkceRatcell division involved_inIEAUniProtKB-KW:KW-01321600115GO_REF:0000043UniProtGO_REF:0000043
PrkceRatcell-substrate adhesion acts_upstream_ofISOPrkce (Mus musculus)1624291MGI:3524969 more ...RGDPMID:15949469
PrkceRatcell-substrate adhesion acts_upstream_ofIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcellular response to ethanol acts_upstream_of_or_withinISOPrkce (Mus musculus)1624291MGI:95623 PMID:17875639RGDPMID:17875639
PrkceRatcellular response to ethanol acts_upstream_of_or_withinIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcellular response to hypoxia acts_upstream_of_or_withinISOPrkce (Mus musculus)1624291 PMID:18070622RGDPMID:18070622
PrkceRatcellular response to hypoxia acts_upstream_of_or_withinIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcellular response to platelet-derived growth factor stimulus involved_inIMP 10047170PMID:22619279UniProt 
PrkceRatcellular response to prostaglandin E stimulus acts_upstream_of_or_withinIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcellular response to prostaglandin E stimulus acts_upstream_of_or_withinISOPrkce (Mus musculus)1624291 PMID:23479225RGDPMID:23479225
PrkceRatestablishment of localization in cell acts_upstream_ofISOPrkce (Mus musculus)1624291MGI:2152043 PMID:12837755 and PMID:17728398RGDPMID:12837755 and PMID:17728398
PrkceRatestablishment of localization in cell acts_upstream_ofIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatimmune system process involved_inIEAUniProtKB-KW:KW-03911600115GO_REF:0000043UniProtGO_REF:0000043
PrkceRatinsulin secretion acts_upstream_ofISOPrkce (Mus musculus)1624291 PMID:12837755RGDPMID:12837755
PrkceRatinsulin secretion acts_upstream_ofIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatintracellular signal transduction  IDA 628493 RGD 
PrkceRatintracellular signal transduction involved_inIBAFB:FBgn0003744 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PrkceRatlipopolysaccharide-mediated signaling pathway involved_inISSUniProtKB:P160541600115GO_REF:0000024UniProtGO_REF:0000024
PrkceRatlipopolysaccharide-mediated signaling pathway acts_upstream_of_or_withinISOPrkce (Mus musculus)1624291MGI:3609215 PMID:11696589RGDPMID:11696589
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Cellular Component
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Original Reference(s)
PrkceRatcell periphery located_inISOPrkce (Mus musculus)1624291 PMID:17611075RGDPMID:17611075
PrkceRatcell periphery located_inIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcell periphery located_inISSUniProtKB:P160541600115GO_REF:0000024UniProtGO_REF:0000024
PrkceRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
PrkceRatcytoplasm located_inIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
PrkceRatcytoplasm located_inISOPRKCE (Homo sapiens)1624291 PMID:15632189 and PMID:19542546RGDPMID:15632189 and PMID:19542546
PrkceRatcytoplasm located_inISOPrkce (Mus musculus)1624291 PMID:14613966RGDPMID:14613966
PrkceRatcytoplasm located_inIEAUniProtKB:Q02156 and ensembl:ENSP000003061241600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
PrkceRatcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
PrkceRatcytosol located_inISOPRKCE (Homo sapiens)1624291 PMID:17603037RGDGO_REF:0000052 and PMID:17603037
PrkceRatcytosol located_inISOPrkce (Mus musculus)1624291 PMID:11884367RGDPMID:11884367
PrkceRatcytosol located_inIEAUniProtKB:L7RTI5 and ensembl:ENSP000003061241600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcytosol located_inIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatcytosol located_inIEAUniProtKB:Q02156 and ensembl:ENSP000003061241600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatendoplasmic reticulum located_inIEAUniProtKB:Q02156 and ensembl:ENSP000003061241600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatendoplasmic reticulum located_inISOPRKCE (Homo sapiens)1624291 PMID:18556656RGDPMID:18556656
PrkceRatglutamatergic synapse is_active_inIDA 13702341PMID:8481800SynGO 
PrkceRatGolgi apparatus located_inISSUniProtKB:P160541600115GO_REF:0000024UniProtGO_REF:0000024
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Molecular Function
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Original Reference(s)
PrkceRat14-3-3 protein binding enablesIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRat14-3-3 protein binding enablesISOPrkce (Mus musculus)1624291UniProtKB:Q9CQV8 and PMID:18604201RGDPMID:18604201
PrkceRatactin monomer binding enablesISSUniProtKB:P160541600115GO_REF:0000024UniProtGO_REF:0000024
PrkceRatactin monomer binding enablesIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatactin monomer binding enablesISOPrkce (Mus musculus)1624291 PMID:11746497RGDPMID:11746497
PrkceRatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
PrkceRatATP binding enablesIEAInterPro:IPR000719 more ...1600115GO_REF:0000002InterProGO_REF:0000002
PrkceRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
PrkceRatdiacylglycerol-dependent serine/threonine kinase activity enablesIEAInterPro:IPR014376 and InterPro:IPR0346691600115GO_REF:0000002InterProGO_REF:0000002
PrkceRatdiacylglycerol-dependent serine/threonine kinase activity enablesIEAEC:2.7.11.131600115GO_REF:0000003UniProtGO_REF:0000003
PrkceRatdiacylglycerol-dependent, calcium-independent serine/threonine kinase activity enablesIMP 10047170PMID:22619279UniProt 
PrkceRatdiacylglycerol-dependent, calcium-independent serine/threonine kinase activity enablesIEAUniProtKB:Q02156 and ensembl:ENSP000003061241600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatdiacylglycerol-dependent, calcium-independent serine/threonine kinase activity enablesIEAUniProtKB:P16054 and ensembl:ENSMUSP000000948741600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatdiacylglycerol-dependent, calcium-independent serine/threonine kinase activity enablesISOPrkce (Mus musculus)1624291 PMID:10879655RGDPMID:10879655
PrkceRatdiacylglycerol-dependent, calcium-independent serine/threonine kinase activity enablesIEAInterPro:IPR0272741600115GO_REF:0000002InterProGO_REF:0000002
PrkceRatdiacylglycerol-dependent, calcium-independent serine/threonine kinase activity enablesISOPRKCE (Homo sapiens)1624291 PMID:18556656RGDPMID:18556656
PrkceRatenzyme activator activity enablesISOPRKCE (Homo sapiens)1624291 PMID:18556656RGDPMID:18556656
PrkceRatenzyme activator activity enablesIEAUniProtKB:Q02156 and ensembl:ENSP000003061241600115GO_REF:0000107EnsemblGO_REF:0000107
PrkceRatenzyme binding enablesISOPRKCE (Homo sapiens)1624291UniProtKB:P52824 more ...RGDPMID:15632189 and PMID:18556656
PrkceRatenzyme binding enablesIEAUniProtKB:Q02156 and ensembl:ENSP000003061241600115GO_REF:0000107EnsemblGO_REF:0000107
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RGD Manual Annotations


  
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Original Reference(s)
PrkceRatprotein kinase C (PKC) signaling pathway   ISOPRKCE (Homo sapiens)5131489 RGD 

Imported Annotations - KEGG (archival)

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Original Reference(s)
PrkceRatFc epsilon receptor mediated signaling pathway  IEA 6907045 KEGGrno:04664
PrkceRatFc gamma receptor mediated signaling pathway  IEA 6907045 KEGGrno:04666
PrkceRattype 2 diabetes mellitus pathway   IEA 6907045 KEGGrno:04930

Imported Annotations - PID (archival)


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#
Reference Title
Reference Citation
1. Protein kinase C translocation and PKC-dependent protein phosphorylation during myocardial ischemia. Albert CJ and Ford DA, Am J Physiol. 1999 Feb;276(2 Pt 2):H642-50.
2. Skin immunosenescence: decreased receptor for activated C kinase-1 expression correlates with defective tumour necrosis factor-alpha production in epidermal cells. Corsini E, etal., Br J Dermatol. 2009 Jan;160(1):16-25. Epub 2008 Oct 11.
3. The coatomer protein beta'-COP, a selective binding protein (RACK) for protein kinase Cepsilon. Csukai M, etal., J Biol Chem 1997 Nov 14;272(46):29200-6.
4. Post-conditioning protects cardiomyocytes from apoptosis via PKC(epsilon)-interacting with calcium-sensing receptors to inhibit endo(sarco)plasmic reticulum-mitochondria crosstalk. Dong S, etal., Mol Cell Biochem. 2010 Aug;341(1-2):195-206. doi: 10.1007/s11010-010-0450-5. Epub 2010 Apr 11.
5. Adenoprotection of the heart involves phospholipase C-induced activation and translocation of PKC-epsilon to RACK2 in adult rat and mouse. Fenton RA, etal., Am J Physiol Heart Circ Physiol. 2009 Aug;297(2):H718-25. Epub 2009 Jun 12.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. CASK associates with glutamate receptor interacting protein and signaling molecules. Hong CJ and Hsueh YP, Biochem Biophys Res Commun. 2006 Dec 22;351(3):771-6. Epub 2006 Oct 30.
9. MicroRNA-143 promotes cardiac ischemia-mediated mitochondrial impairment by the inhibition of protein kinase Cepsilon. Hong H, etal., Basic Res Cardiol. 2017 Sep 8;112(6):60. doi: 10.1007/s00395-017-0649-7.
10. Isolation of cDNA clones encoding protein kinase C: evidence for a protein kinase C-related gene family. Housey GM, etal., Proc Natl Acad Sci U S A 1987 Feb;84(4):1065-9.
11. PKCepsilon-PKD1 signaling complex at Z-discs plays a pivotal role in the cardiac hypertrophy induced by G-protein coupling receptor agonists. Iwata M, etal., Biochem Biophys Res Commun. 2005 Feb 25;327(4):1105-13. doi: 10.1016/j.bbrc.2004.12.128.
12. The regulatory domain of protein kinase C delta positively regulates insulin receptor signaling. Jacob AI, etal., J Mol Endocrinol. 2010 Mar;44(3):155-69. Epub 2009 Dec 1.
13. Protein kinase C isozymes in hypertension and hypertrophy: insight from SHHF rat hearts. Johnsen DD, etal., Mol Cell Biochem. 2005 Feb;270(1-2):63-9.
14. Mammalian homologue of the Caenorhabditis elegans UNC-76 protein involved in axonal outgrowth is a protein kinase C zeta-interacting protein. Kuroda S, etal., J Cell Biol 1999 Feb 8;144(3):403-11.
15. Selective changes in protein kinase C isoforms and phosphorylation of endogenous substrate proteins in rat cerebral cortex during pre- and postnatal ethanol exposure. Mahadev K and Vemuri MC, Arch Biochem Biophys. 1998 Aug 15;356(2):249-57.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Role of protein kinase C in the signal pathways that link Na+/K+-ATPase to ERK1/2. Mohammadi K, etal., J Biol Chem 2001 Nov 9;276(45):42050-6.
18. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
19. Protein kinase C: poised to signal. Newton AC Am J Physiol Endocrinol Metab. 2010 Mar;298(3):E395-402. Epub 2009 Nov 24.
20. The novel protein kinase C epsilon isoform modulates acetylcholine release in the rat neuromuscular junction. Obis T, etal., Mol Brain. 2015 Dec 1;8(1):80. doi: 10.1186/s13041-015-0171-5.
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PMID:3691811   PMID:8940095   PMID:9447980   PMID:10407019   PMID:10431815   PMID:10879655   PMID:11118818   PMID:11696589   PMID:11738801   PMID:11746497   PMID:11884367   PMID:11934807  
PMID:11940581   PMID:11950946   PMID:12064598   PMID:12496267   PMID:12551921   PMID:12566450   PMID:12590138   PMID:12606313   PMID:12626328   PMID:12665507   PMID:12665800   PMID:12694383  
PMID:12763745   PMID:12829427   PMID:12837755   PMID:12943654   PMID:12967635   PMID:14529276   PMID:14534528   PMID:14561782   PMID:14578604   PMID:14613966   PMID:14679204   PMID:14963000  
PMID:15039458   PMID:15096499   PMID:15181371   PMID:15339253   PMID:15499382   PMID:15532718   PMID:15596539   PMID:15632189   PMID:15695813   PMID:15764590   PMID:15769752   PMID:15805233  
PMID:15838306   PMID:15886222   PMID:15905535   PMID:15949469   PMID:16084468   PMID:16270034   PMID:16336199   PMID:16564619   PMID:16574982   PMID:16648180   PMID:16720572   PMID:16757566  
PMID:16793902   PMID:16836642   PMID:16870611   PMID:16899053   PMID:16960097   PMID:17035302   PMID:17038313   PMID:17091491   PMID:17202284   PMID:17300177   PMID:17307294   PMID:17350763  
PMID:17513490   PMID:17553064   PMID:17569658   PMID:17577736   PMID:17603037   PMID:17611075   PMID:17660387   PMID:17673178   PMID:17675573   PMID:17728104   PMID:17728398   PMID:17762167  
PMID:17875639   PMID:17908177   PMID:17951366   PMID:17964599   PMID:17989210   PMID:18070622   PMID:18182053   PMID:18184652   PMID:18323529   PMID:18342576   PMID:18380541   PMID:18388183  
PMID:18390563   PMID:18408135   PMID:18417696   PMID:18480594   PMID:18486624   PMID:18496674   PMID:18534741   PMID:18556656   PMID:18586884   PMID:18604201   PMID:18668351   PMID:18789391  
PMID:18804478   PMID:18957990   PMID:18973552   PMID:19057126   PMID:19098115   PMID:19101610   PMID:19160413   PMID:19166962   PMID:19249914   PMID:19286950   PMID:19324912   PMID:19339511  
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Prkce
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8613,718,050 - 14,204,931 (-)NCBIGRCr8
mRatBN7.267,965,048 - 8,451,966 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl67,965,048 - 8,451,719 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx68,241,962 - 8,728,298 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.068,551,358 - 9,037,685 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.068,078,663 - 8,564,995 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.069,483,400 - 9,973,396 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl69,790,422 - 9,973,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.069,404,548 - 9,883,579 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.469,631,234 - 10,097,311 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.169,631,241 - 10,097,311 (+)NCBI
Celera67,696,161 - 8,179,574 (-)NCBICelera
Cytogenetic Map6q12NCBI
PRKCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38245,651,279 - 46,187,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl245,651,345 - 46,187,990 (+)EnsemblGRCh38hg38GRCh38
GRCh37245,878,814 - 46,415,129 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36245,732,547 - 46,268,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 34245,790,693 - 46,326,779NCBI
Celera245,717,245 - 46,253,470 (+)NCBICelera
Cytogenetic Map2p21NCBI
HuRef245,617,217 - 46,153,158 (+)NCBIHuRef
CHM1_1245,810,047 - 46,345,904 (+)NCBICHM1_1
T2T-CHM13v2.0245,656,327 - 46,193,193 (+)NCBIT2T-CHM13v2.0
Prkce
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391786,472,631 - 86,965,347 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1786,475,213 - 86,965,347 (+)EnsemblGRCm39 Ensembl
GRCm381786,167,785 - 86,657,919 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1786,167,785 - 86,657,919 (+)EnsemblGRCm38mm10GRCm38
MGSCv371786,567,125 - 87,057,259 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361786,076,916 - 86,563,024 (+)NCBIMGSCv36mm8
Celera1790,540,474 - 91,038,578 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1756.74NCBI
Prkce
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544112,642,697 - 13,139,372 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544112,642,703 - 13,142,396 (+)NCBIChiLan1.0ChiLan1.0
PRKCE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21280,214,185 - 80,750,763 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A80,218,154 - 80,754,448 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A45,757,629 - 46,294,064 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A46,688,109 - 47,223,421 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A46,688,436 - 47,220,313 (+)Ensemblpanpan1.1panPan2
PRKCE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11047,976,929 - 48,464,614 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1047,976,768 - 48,535,296 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1047,832,146 - 48,319,423 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01048,849,986 - 49,335,766 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1048,849,926 - 49,335,759 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11048,557,609 - 49,044,861 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01048,849,404 - 49,334,809 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01049,029,809 - 49,517,384 (+)NCBIUU_Cfam_GSD_1.0
Prkce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629234,589,765 - 35,066,607 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365086,017,551 - 6,494,427 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365086,018,374 - 6,495,216 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRKCE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl394,349,889 - 94,866,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1394,351,277 - 94,864,549 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23100,427,723 - 100,762,372 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRKCE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11461,022,903 - 61,570,390 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1461,026,017 - 61,242,343 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604550,297,930 - 50,835,743 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prkce
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473827,118,145 - 27,627,606 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473827,118,764 - 27,630,733 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Prkce
2424 total Variants

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:52
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000020959
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)6796416721301982Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6507449719988050Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat

1 to 10 of 24 rows
D6Rat211  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8614,028,632 - 14,028,767 (+)Marker Load Pipeline
mRatBN7.268,275,655 - 8,275,790 (-)MAPPERmRatBN7.2
Rnor_6.069,659,961 - 9,660,095NCBIRnor6.0
Rnor_5.069,577,576 - 9,577,710UniSTSRnor5.0
RGSC_v3.469,807,867 - 9,808,002RGDRGSC3.4
RGSC_v3.469,807,868 - 9,808,002UniSTSRGSC3.4
RGSC_v3.169,807,867 - 9,808,002RGD
Celera68,004,968 - 8,005,102UniSTS
SHRSP x BN Map61.1099UniSTS
SHRSP x BN Map61.1099RGD
Cytogenetic Map6q12UniSTS
RH132957  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.268,232,099 - 8,232,286 (-)MAPPERmRatBN7.2
Rnor_6.069,704,663 - 9,704,849NCBIRnor6.0
Rnor_5.069,619,780 - 9,619,966UniSTSRnor5.0
Celera67,961,503 - 7,961,689UniSTS
Cytogenetic Map6q12UniSTS
RH133520  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.267,964,891 - 7,965,091 (-)MAPPERmRatBN7.2
Rnor_6.069,973,353 - 9,973,552NCBIRnor6.0
Rnor_5.069,883,536 - 9,883,735UniSTSRnor5.0
RGSC_v3.4610,097,268 - 10,097,467UniSTSRGSC3.4
Celera67,696,005 - 7,696,204UniSTS
Cytogenetic Map6q12UniSTS
RH140883  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.268,181,763 - 8,181,960 (-)MAPPERmRatBN7.2
Rnor_6.069,754,982 - 9,755,178NCBIRnor6.0
Rnor_5.069,669,040 - 9,669,236UniSTSRnor5.0
RGSC_v3.469,878,012 - 9,878,208UniSTSRGSC3.4
Celera67,911,138 - 7,911,334UniSTS
Cytogenetic Map6q12UniSTS
AL033630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.267,972,792 - 7,974,085 (-)MAPPERmRatBN7.2
Rnor_6.069,964,359 - 9,965,651NCBIRnor6.0
Rnor_5.069,874,542 - 9,875,834UniSTSRnor5.0
RGSC_v3.4610,088,274 - 10,089,566UniSTSRGSC3.4
Cytogenetic Map6q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000020959   ⟹   ENSRNOP00000020959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl67,965,048 - 8,451,319 (-)Ensembl
Rnor_6.0 Ensembl69,790,422 - 9,973,396 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089272   ⟹   ENSRNOP00000070421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl68,441,785 - 8,451,719 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097902   ⟹   ENSRNOP00000083427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl67,965,048 - 8,451,319 (-)Ensembl
RefSeq Acc Id: NM_017171   ⟹   NP_058867
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8613,718,050 - 14,204,288 (-)NCBI
mRatBN7.267,965,048 - 8,451,327 (-)NCBI
Rnor_6.069,483,400 - 9,973,396 (+)NCBI
Rnor_5.069,404,548 - 9,883,579 (+)NCBI
RGSC_v3.469,631,234 - 10,097,311 (+)RGD
Celera67,696,161 - 8,179,574 (-)RGD
Sequence:
RefSeq Acc Id: XM_039111827   ⟹   XP_038967755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8613,718,360 - 14,204,931 (-)NCBI
mRatBN7.267,965,352 - 8,451,966 (-)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_058867 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967755 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41872 (Get FASTA)   NCBI Sequence Viewer  
  AAA41877 (Get FASTA)   NCBI Sequence Viewer  
  AAT65503 (Get FASTA)   NCBI Sequence Viewer  
  EDM02661 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020959
  ENSRNOP00000070421
GenBank Protein P09216 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_058867   ⟸   NM_017171
- UniProtKB: P09216 (UniProtKB/Swiss-Prot),   F1LMV8 (UniProtKB/TrEMBL),   Q6DUV1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020959   ⟸   ENSRNOT00000020959
RefSeq Acc Id: XP_038967755   ⟸   XM_039111827
- Peptide Label: isoform X1
- UniProtKB: P09216 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000083427   ⟸   ENSRNOT00000097902
Ensembl Acc Id: ENSRNOP00000070421   ⟸   ENSRNOT00000089272
Name Modeler Protein Id AA Range Protein Structure
AF-P09216-F1-model_v2 AlphaFold P09216 1-737 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 55 rows
Database
Acc Id
Source(s)
BIND 133998
BioCyc Gene G2FUF-38703 BioCyc
Ensembl Genes ENSRNOG00000015603 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000020959 ENTREZGENE
  ENSRNOT00000089272 ENTREZGENE
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot
  3.30.60.20 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro AGC-kinase_C UniProtKB/Swiss-Prot
  C1-like_sf UniProtKB/Swiss-Prot
  C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  DAG/PE-bd UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  nPKC_epsilon UniProtKB/Swiss-Prot
  PE/DAG-bd UniProtKB/Swiss-Prot
  PKC_epsilon UniProtKB/Swiss-Prot
  Pkinase_C UniProtKB/Swiss-Prot
  Prot_kin_PKC_delta UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
KEGG Report rno:29340 UniProtKB/Swiss-Prot
NCBI Gene 29340 ENTREZGENE
PANTHER RIBOSOMAL PROTEIN S6 KINASE UniProtKB/Swiss-Prot
Pfam C1_1 UniProtKB/Swiss-Prot
  PF00168 UniProtKB/Swiss-Prot
  Pkinase UniProtKB/Swiss-Prot
  Pkinase_C UniProtKB/Swiss-Prot
PhenoGen Prkce PhenoGen
PIRSF PKC_delta UniProtKB/Swiss-Prot
  Protein_kin_C_epsilon UniProtKB/Swiss-Prot
PRINTS DAGPEDOMAIN UniProtKB/Swiss-Prot
PROSITE AGC_KINASE_CTER UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
  PS50004 UniProtKB/Swiss-Prot
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot
1 to 40 of 55 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Prkce  protein kinase C, epsilon      Name updated 70584 APPROVED
2001-12-12 Prkce  protein kinase C, epsilon      Symbol and Name updated to reflect Human and Mouse nomenclature 69665 APPROVED
2001-12-10 Prkce  protein kinase C, epsilon      --select from list or type below-- 69665 WITHDRAWN

Note Type Note Reference
gene_drugs activation by the digitalis drug ouabain is linked to Na+/K+-ATPase through Src/EGFR, and is required for the activation of ERK1/2 628493