Raf1 (Raf-1 proto-oncogene, serine/threonine kinase) - Rat Genome Database

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Gene: Raf1 (Raf-1 proto-oncogene, serine/threonine kinase) Rattus norvegicus
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Symbol: Raf1
Name: Raf-1 proto-oncogene, serine/threonine kinase
RGD ID: 3531
Description: Enables several functions, including ATP binding activity; adenylate cyclase activator activity; and enzyme binding activity. Involved in several processes, including MAPK cascade; protein phosphorylation; and response to hypoxia. Located in cytoplasm and plasma membrane. Biomarker of pancreatic carcinoma. Human ortholog(s) of this gene implicated in Noonan syndrome (multiple); Noonan syndrome with multiple lentigines 2; adenocarcinoma (multiple); and dilated cardiomyopathy 1NN. Orthologous to human RAF1 (Raf-1 proto-oncogene, serine/threonine kinase); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; altered extracellular signal-regulated Raf/Mek/Erk signaling pathway; ceramide signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-RAF; cRaf; Murine leukemia viral (v-raf-1) oncogene homolog 1 (3611-MSV); proto-oncogene c-RAF; RAF proto-oncogene serine/threonine-protein kinase; raf-1; v-raf-1 murine leukemia viral oncogene homolog 1; v-raf-leukemia viral oncogene 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,352,158 - 150,412,813 (-)NCBIGRCr8
mRatBN7.24148,679,534 - 148,740,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,679,530 - 148,740,317 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4154,903,973 - 154,964,738 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,687,056 - 150,747,821 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,310,879 - 149,371,650 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,532,040 - 147,592,769 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,532,042 - 147,592,699 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04210,819,148 - 210,878,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44151,752,583 - 151,775,609 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14151,997,425 - 152,020,450 (-)NCBI
Celera4137,570,499 - 137,631,125 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Raf1RatCardiomegaly  ISORaf1 (Mus musculus)12910709DNA:point mutation:exon:p.D486N (mouse)RGD 
Raf1Ratcolorectal adenocarcinoma  ISORAF1 (Homo sapiens)13217408 RGD 
Raf1Ratcolorectal adenoma  ISORAF1 (Homo sapiens)13217408 RGD 
Raf1Ratischemia  ISORaf1 (Mus musculus)1580696 RGD 
Raf1RatLymphangiectasis  ISORaf1 (Mus musculus)12910710DNA:point mutation:exon :p.S259A (mouse)RGD 
Raf1RatNoonan syndrome  ISORAF1 (Homo sapiens)11064112DNA:missense mutations: exon:multipleRGD 
Raf1RatNoonan syndrome  ISORAF1 (Homo sapiens)11063621DNA:missense mutations:exon:multipleRGD 
Raf1RatNoonan syndrome  ISORAF1 (Homo sapiens)11064431DNA:missense mutations:exon:multipleRGD 
Raf1RatNoonan syndrome  ISORaf1 (Mus musculus)12910711DNA:point mutation:exon:p.L613V (mouse)RGD 
Raf1Ratpancreatic adenocarcinoma treatmentISORAF1 (Homo sapiens)14392893human cells in a mouse modelRGD 
Raf1Ratpancreatic carcinoma  IEP 14392892mRNA:increased expression:pancreas (rat)RGD 
Raf1Ratprostate adenocarcinoma treatmentISORAF1 (Homo sapiens)13506897 RGD 
Raf1Ratprostate cancer disease_progressionISORAF1 (Homo sapiens)13506811 RGD 
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Original Reference(s)
Raf1Ratdilated cardiomyopathy  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary dilated cardiomyopathyClinVarPMID:24777450 more ...
Raf1Ratdilated cardiomyopathy  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary dilated cardiomyopathyClinVarPMID:24777450 more ...
Raf1Ratdilated cardiomyopathy 1B  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hypokinetic dilated cardiomyopathy and familialClinVarPMID:22558107 more ...
Raf1Ratdilated cardiomyopathy 1NN  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Dilated cardiomyopathy 1NNClinVarPMID:10064593 more ...
Raf1RatDilated Cardiomyopathy with Left Ventricular Noncompaction  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Left ventricular noncompaction cardiomyopathyClinVarPMID:25741868 and PMID:34540771
Raf1Ratfamilial hypertrophic cardiomyopathy  ISORAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12077328 more ...
Raf1Ratgenetic disease  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:17603482 more ...
Raf1Rathereditary breast ovarian cancer syndrome  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary breast and ovarian cancerClinVarPMID:17603482 more ...
Raf1Rathigh grade glioma  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: GliomaClinVar 
Raf1Rathypertrophic cardiomyopathy 1  ISORAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17603482 more ...
Raf1Ratlung adenocarcinoma  ISORAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10064593 more ...
Raf1RatNoonan syndrome  ISORAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10064593 more ...
Raf1RatNoonan syndrome 1  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Noonan syndrome 1ClinVarPMID:10064593 more ...
Raf1RatNoonan syndrome 3  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Noonan syndrome 3ClinVarPMID:17603482 more ...
Raf1RatNoonan syndrome 5  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Noonan syndrome 5ClinVarPMID:10064593 more ...
Raf1RatNoonan syndrome with multiple lentigines  ISORAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10064593 more ...
Raf1RatNoonan syndrome with multiple lentigines 2  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: LEOPARD syndrome 2ClinVarPMID:10064593 more ...
Raf1RatPituitary Stalk Interruption Syndrome  ISORAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pituitary stalk interruption syndromeClinVarPMID:25741868
Raf1RatRASopathy  ISORAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10064593 more ...
Raf1RatRASopathy  ISORAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10064593 more ...
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Original Reference(s)
Raf1RatBreast Neoplasms  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:12432273
Raf1Ratdilated cardiomyopathy  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24777450
Raf1Rathigh grade glioma  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23583981
Raf1RatHyperalgesia  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18976650
Raf1Rathypertrophic cardiomyopathy  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17603482 and PMID:17603483
Raf1RatKidney Neoplasms  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21813464
Raf1RatLiver Neoplasms  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19499222
Raf1RatLung Neoplasms  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11884234
Raf1Ratlung non-small cell carcinoma  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16862215
Raf1Ratmalignant mesothelioma  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25756049
Raf1RatNoonan syndrome  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17603482 and PMID:17603483
Raf1RatNoonan syndrome 5  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Raf1RatNoonan syndrome with multiple lentigines  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17603483
Raf1RatNoonan syndrome with multiple lentigines 2  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Raf1Ratovarian carcinoma  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28811376
Raf1RatProstatic Neoplasms  ISORAF1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:32512071
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Raf1RatNoonan syndrome 5  ISSRaf1 (Mus musculus)13592920OMIM:611553MouseDO 
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Raf1Ratdilated cardiomyopathy 1NN  ISORAF1 (Homo sapiens)7240710 OMIM 
Raf1RatNoonan syndrome 5  ISORAF1 (Homo sapiens)7240710 OMIM 
Raf1RatNoonan syndrome with multiple lentigines 2  ISORAF1 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Raf1Rat(1->4)-beta-D-glucan multiple interactionsISORaf1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of RAF1 mRNACTDPMID:36331819
Raf1Rat(20R)-protopanaxadiol increases phosphorylationISORAF1 (Homo sapiens)6480464protopanaxadiol results in increased phosphorylation of RAF1 proteinCTDPMID:31805304
Raf1Rat(S)-(-)-perillyl alcohol multiple interactionsISORaf1 (Mus musculus)6480464perillyl alcohol inhibits the reaction [Tetradecanoylphorbol Acetate results in increased expression of RAF1 protein]CTDPMID:19161993
Raf1Rat(S)-nicotine increases activityISORAF1 (Homo sapiens)6480464Nicotine results in increased activity of RAF1 proteinCTDPMID:17459420
Raf1Rat(S)-nicotine affects localizationISORaf1 (Mus musculus)6480464Nicotine affects the localization of RAF1 proteinCTDPMID:15574422
Raf1Rat(S)-nicotine multiple interactionsISORAF1 (Homo sapiens)6480464Aconitine analog inhibits the reaction [Nicotine promotes the reaction [RB1 protein binds to RAF1 protein]] more ...CTDPMID:16862215
Raf1Rat1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of RAF1 mRNACTDPMID:32387197
Raf1Rat1,2-dimethylhydrazine multiple interactionsISORaf1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of RAF1 mRNACTDPMID:22206623
Raf1Rat1,2-dimethylhydrazine affects expressionISORaf1 (Mus musculus)64804641 and 2-Dimethylhydrazine affects the expression of RAF1 mRNACTDPMID:22206623
Raf1Rat1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile increases expressionEXP 6480464Citalopram results in increased expression of RAF1 mRNACTDPMID:28467792
Raf1Rat15-deoxy-Delta(12,14)-prostaglandin J2 multiple interactionsISORaf1 (Mus musculus)648046415-deoxy-delta(12 and 14)-prostaglandin J2 results in increased activity of and results in decreased phosphorylation of RAF1 proteinCTDPMID:12083801
Raf1Rat17beta-estradiol increases activityISORAF1 (Homo sapiens)6480464Estradiol results in increased activity of RAF1 proteinCTDPMID:12432273
Raf1Rat17beta-estradiol increases expressionISORaf1 (Mus musculus)6480464Estradiol results in increased expression of RAF1 mRNACTDPMID:39298647
Raf1Rat17beta-estradiol increases phosphorylationISORAF1 (Homo sapiens)6480464Estradiol results in increased phosphorylation of RAF1 proteinCTDPMID:15930183 and PMID:27026707
Raf1Rat17beta-estradiol decreases expressionISORAF1 (Homo sapiens)6480464Estradiol results in decreased expression of RAF1 mRNACTDPMID:16029874
Raf1Rat17beta-estradiol 3-benzoate decreases phosphorylationEXP 6480464estradiol 3-benzoate results in decreased phosphorylation of RAF1 proteinCTDPMID:15778002
Raf1Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORAF1 (Homo sapiens)64804642 more ...CTDPMID:20840854
Raf1Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISORAF1 (Homo sapiens)64804642 more ...CTDPMID:26988655
Raf1Rat2,3,7,8-tetrachlorodibenzodioxine affects localizationISORaf1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the localization of RAF1 proteinCTDPMID:19555203
Raf1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RAF1 mRNACTDPMID:18708364 and PMID:34747641

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Biological Process
1 to 20 of 62 rows

  
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Original Reference(s)
Raf1Ratcell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratcell differentiation acts_upstream_of_or_withinISORaf1 (Mus musculus)1624291MGI:88190 PMID:10704835RGDPMID:10704835
Raf1Ratdeath-inducing signaling complex assembly acts_upstream_of_or_withinISORaf1 (Mus musculus)1624291MGI:2388026 PMID:16365167RGDPMID:16365167
Raf1Ratdeath-inducing signaling complex assembly acts_upstream_of_or_withinIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1RatERBB2-ERBB3 signaling pathway involved_inIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1RatERBB2-ERBB3 signaling pathway involved_inISORaf1 (Mus musculus)1624291 PMID:24493648RGDPMID:24493648
Raf1Ratextrinsic apoptotic signaling pathway via death domain receptors acts_upstream_ofISORaf1 (Mus musculus)1624291MGI:2388026 more ...RGDPMID:16365167
Raf1Ratextrinsic apoptotic signaling pathway via death domain receptors acts_upstream_ofIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratface development acts_upstream_of_or_withinIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratface development acts_upstream_of_or_withinISORaf1 (Mus musculus)1624291MGI:88190 PMID:18952847RGDPMID:18952847
Raf1Ratheart development  IEP 70317 RGD 
Raf1Ratinsulin receptor signaling pathway involved_inIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratinsulin receptor signaling pathway involved_inISORaf1 (Mus musculus)1624291 PMID:20056832RGDPMID:20056832
Raf1Ratinsulin secretion involved in cellular response to glucose stimulus acts_upstream_of_or_withinISORaf1 (Mus musculus)1624291MGI:3497907 PMID:21817126RGDPMID:21817126
Raf1Ratinsulin secretion involved in cellular response to glucose stimulus acts_upstream_of_or_withinIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratinsulin-like growth factor receptor signaling pathway involved_inIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratinsulin-like growth factor receptor signaling pathway involved_inISORaf1 (Mus musculus)1624291 PMID:33567274RGDPMID:33567274
Raf1Ratintermediate filament cytoskeleton organization acts_upstream_of_or_withinISORaf1 (Mus musculus)1624291MGI:2388026 PMID:16365167RGDPMID:16365167
Raf1Ratintermediate filament cytoskeleton organization acts_upstream_of_or_withinIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratintracellular glucose homeostasis acts_upstream_of_or_withinIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Raf1Ratcytoplasm located_inISORAF1 (Homo sapiens)1624291 PMID:17724343RGDPMID:17724343
Raf1Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Raf1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Raf1Ratcytoplasm is_active_inIBAFB:FBgn0030018 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Raf1Ratcytoplasm located_inIEAUniProtKB:P04049 and ensembl:ENSP000002518491600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratcytoplasm located_inIDA 8553779PMID:19878719UniProt 
Raf1Ratcytosol located_inIEAUniProtKB:L7RRS6 and ensembl:ENSP000002518491600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratcytosol is_active_inIBAPANTHER:PTN000584576 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Raf1Ratcytosol located_inTAS 1600115Reactome:R-RNO-9612988ReactomeReactome:R-RNO-9612988
Raf1Ratcytosol located_inTAS 1600115Reactome:R-RNO-182065ReactomeReactome:R-RNO-182065
Raf1Ratcytosol located_inTAS 1600115Reactome:R-RNO-188339ReactomeReactome:R-RNO-188339
Raf1Ratcytosol located_inISORAF1 (Homo sapiens)1624291 PMID:16009725RGDPMID:16009725
Raf1Ratcytosol located_inISORAF1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Raf1Ratcytosol located_inIEAUniProtKB:P04049 and ensembl:ENSP000002518491600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1RatGolgi apparatus located_inIEAUniProtKB:P04049 and ensembl:ENSP000002518491600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1RatGolgi apparatus located_inISORAF1 (Homo sapiens)1624291UniProtKB:Q6TCH7 and PMID:17724343RGDPMID:17724343
Raf1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Raf1Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Raf1Ratmitochondrion located_inIEAUniProtKB-SubCell:SL-01731600115GO_REF:0000044UniProtGO_REF:0000044
Raf1Ratmitochondrion is_active_inIBAMGI:88065 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Molecular Function
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Raf1Ratadenylate cyclase activator activity enablesIDA 8554216PMID:15385642BHF-UCL 
Raf1Ratadenylate cyclase activator activity enablesISORAF1 (Homo sapiens)1624291 PMID:15385642RGDPMID:15385642
Raf1Ratadenylate cyclase activator activity enablesIEAUniProtKB:P04049 and ensembl:ENSP000002518491600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratadenylate cyclase binding enablesIPIUniProtKB:Q033438554216PMID:15385642BHF-UCL 
Raf1RatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
Raf1RatATP binding  IDA 2298675 RGD 
Raf1RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Raf1RatATP binding enablesIEAInterPro:IPR000719 and InterPro:IPR0174411600115GO_REF:0000002InterProGO_REF:0000002
Raf1Ratenzyme binding enablesISORAF1 (Homo sapiens)1624291UniProtKB:O60658 and PMID:23509299RGDPMID:23509299
Raf1Ratenzyme binding enablesIEAUniProtKB:P04049 and ensembl:ENSP000002518491600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratidentical protein binding enablesIEAUniProtKB:P04049 and ensembl:ENSP000002518491600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1Ratidentical protein binding enablesISORAF1 (Homo sapiens)1624291UniProtKB:P04049 more ...RGDPMID:17979178 more ...
Raf1Ratkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
Raf1RatMAP kinase kinase kinase activity  IMP 1580106 RGD 
Raf1RatMAP kinase kinase kinase activity  IDA 2298675 RGD 
Raf1RatMAP kinase kinase kinase activity enablesIBAFB:FBgn0003079 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Raf1RatMAP kinase kinase kinase activity enablesISORaf1 (Mus musculus)1624291 PMID:12354753 and PMID:1322500RGDPMID:12354753 and PMID:1322500
Raf1RatMAP kinase kinase kinase activity enablesIEAUniProtKB:Q99N57 and ensembl:ENSMUSP000000004511600115GO_REF:0000107EnsemblGO_REF:0000107
Raf1RatMAP kinase kinase kinase activity  IDA 2298801 RGD 
Raf1RatMAP kinase kinase kinase activity  IDA 1580670 RGD 
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RGD Manual Annotations


  

Imported Annotations - SMPDB

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Raf1RatFc epsilon receptor mediated signaling pathway  ISORAF1 (Homo sapiens)10402751 SMPDBSMP:00358
Raf1Ratinsulin signaling pathway   ISORAF1 (Homo sapiens)10402751 SMPDBSMP:00391

Imported Annotations - KEGG (archival)

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Raf1Ratacute myeloid leukemia pathway  IEA 6907045 KEGGrno:05221
Raf1RatB cell receptor signaling pathway  IEA 6907045 KEGGrno:04662
Raf1Ratceramide signaling pathway  IEA 6907045 KEGGrno:05212
Raf1Ratchemokine mediated signaling pathway  IEA 6907045 KEGGrno:04062
Raf1Ratchronic myeloid leukemia pathway  IEA 6907045 KEGGrno:05220
Raf1Ratcolorectal cancer pathway   IEA 6907045 KEGGrno:05210
Raf1Ratendometrial cancer pathway   IEA 6907045 KEGGrno:05213
Raf1Ratepidermal growth factor/neuregulin signaling pathway   IEA 6907045 KEGGrno:04012
Raf1RatFc epsilon receptor mediated signaling pathway  IEA 6907045 KEGGrno:04664
Raf1RatFc gamma receptor mediated signaling pathway  IEA 6907045 KEGGrno:04666
Raf1Ratglioma pathway  IEA 6907045 KEGGrno:05214
Raf1Ratgonadotropin-releasing hormone signaling pathway  IEA 6907045 KEGGrno:04912
Raf1Rathepatitis C pathway  IEA 6907045 KEGGrno:05160
Raf1Ratinfluenza A pathway  IEA 6907045 KEGGrno:05164
Raf1Ratinsulin signaling pathway   IEA 6907045 KEGGrno:04910
Raf1Ratlong term depression  IEA 6907045 KEGGrno:04730
Raf1Ratlong term potentiation  IEA 6907045 KEGGrno:04720
Raf1Ratmelanoma pathway  IEA 6907045 KEGGrno:05218
Raf1Ratmitogen activated protein kinase signaling pathway   IEA 6907045 KEGGrno:04010
Raf1Ratneurotrophic factor signaling pathway  IEA 6907045 KEGGrno:04722
1 to 20 of 28 rows

1 to 20 of 45 rows
#
Reference Title
Reference Citation
1. Role of Raf in vascular protection from distinct apoptotic stimuli. Alavi A, etal., Science 2003 Jul 4;301(5629):94-6.
2. Mutations in conserved regions 1, 2, and 3 of Raf-1 that activate transforming activity. Chan EY, etal., Mol Carcinog 2002 Apr;33(4):189-97.
3. beta-arrestin-dependent endocytosis of proteinase-activated receptor 2 is required for intracellular targeting of activated ERK1/2. DeFea KA, etal., J Cell Biol. 2000 Mar 20;148(6):1267-81.
4. Endothelial ERK signaling controls lymphatic fate specification. Deng Y, etal., J Clin Invest. 2013 Mar;123(3):1202-15. doi: 10.1172/JCI63034. Epub 2013 Feb 8.
5. Raf kinase activation of adenylyl cyclases: isoform-selective regulation. Ding Q, etal., Mol Pharmacol. 2004 Oct;66(4):921-8.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Hepatic epidermal growth factor-regulated mitogen-activated protein kinase kinase kinase activity in the rat: lack of identity with known forms of raf and MEKK. Gruppuso PA and Boylan JM, FEBS Lett. 2000 Jan 21;466(1):200-4.
9. Gene Data File Integration of LocusLink data, October 12, 2001
10. Rat c-raf oncogene activation by a rearrangement that produces a fused protein. Ishikawa F, etal., Mol Cell Biol 1987 Mar;7(3):1226-32.
11. Diabetes regulates small molecular weight G-protein, H-Ras, in the microvasculature of the retina: implication in the development of retinopathy. Kanwar M and Kowluru RA, Microvasc Res. 2008 Nov;76(3):189-93. Epub 2008 Apr 25.
12. Expression of mitogen-activated protein kinase pathways during postnatal development of rat heart. Kim SO, etal., J Cell Biochem 1998 Nov 1;71(2):286-301.
13. Molecular and clinical analysis of RAF1 in Noonan syndrome and related disorders: dephosphorylation of serine 259 as the essential mechanism for mutant activation. Kobayashi T, etal., Hum Mutat. 2010 Mar;31(3):284-94. doi: 10.1002/humu.21187.
14. Roles of the Raf/MEK/ERK pathway in cell growth, malignant transformation and drug resistance. McCubrey JA, etal., Biochim Biophys Acta. 2007 Aug;1773(8):1263-84. Epub 2006 Oct 7.
15. Affinity with Raf is sufficient for Ras to efficiently induce rat mammary carcinomas. McFarlin DR, etal., Carcinogenesis 2003 Jan;24(1):99-105.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. Raf-1 expression may influence progression to androgen insensitive prostate cancer. Mukherjee R, etal., Prostate. 2005 Jun 15;64(1):101-7. doi: 10.1002/pros.20211.
18. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
19. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
20. Systemic delivery of RafsiRNA using cationic cardiolipin liposomes silences Raf-1 expression and inhibits tumor growth in xenograft model of human prostate cancer. Pal A, etal., Int J Oncol. 2005 Apr;26(4):1087-91.
1 to 20 of 45 rows
PMID:8026469   PMID:8307946   PMID:9551081   PMID:9560161   PMID:9679960   PMID:9765203   PMID:9852579   PMID:9931261   PMID:10329666   PMID:10407019   PMID:10644344   PMID:10704835  
PMID:11698596   PMID:12194967   PMID:12551925   PMID:12821670   PMID:12954639   PMID:14654844   PMID:14978028   PMID:15211515   PMID:15489334   PMID:15975997   PMID:16009725   PMID:16365167  
PMID:16396499   PMID:16737746   PMID:16954213   PMID:17554210   PMID:17724343   PMID:17979178   PMID:18243549   PMID:18328477   PMID:18708364   PMID:18952847   PMID:19381846   PMID:19667065  
PMID:20110729   PMID:20130576   PMID:20442316   PMID:20718739   PMID:20953701   PMID:21440552   PMID:21817126   PMID:21917714   PMID:22169110   PMID:22510884   PMID:22610096   PMID:22983684  
PMID:23022482   PMID:23509299   PMID:23611784   PMID:23928917   PMID:24885948   PMID:25367879   PMID:28057484   PMID:30140388   PMID:31521821   PMID:33424842   PMID:34229010  



Raf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,352,158 - 150,412,813 (-)NCBIGRCr8
mRatBN7.24148,679,534 - 148,740,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,679,530 - 148,740,317 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4154,903,973 - 154,964,738 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,687,056 - 150,747,821 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,310,879 - 149,371,650 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,532,040 - 147,592,769 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,532,042 - 147,592,699 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04210,819,148 - 210,878,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44151,752,583 - 151,775,609 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14151,997,425 - 152,020,450 (-)NCBI
Celera4137,570,499 - 137,631,125 (-)NCBICelera
Cytogenetic Map4q42NCBI
RAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38312,583,601 - 12,664,117 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl312,582,101 - 12,664,201 (-)EnsemblGRCh38hg38GRCh38
GRCh37312,625,100 - 12,705,616 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36312,600,108 - 12,680,678 (-)NCBINCBI36Build 36hg18NCBI36
Build 34312,600,107 - 12,680,678NCBI
Celera312,563,426 - 12,643,994 (-)NCBICelera
Cytogenetic Map3p25.2NCBI
HuRef312,559,317 - 12,640,382 (-)NCBIHuRef
CHM1_1312,575,179 - 12,655,743 (-)NCBICHM1_1
T2T-CHM13v2.0312,582,405 - 12,665,632 (-)NCBIT2T-CHM13v2.0
Raf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,595,530 - 115,653,596 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,595,028 - 115,653,596 (-)EnsemblGRCm39 Ensembl
GRCm386115,618,569 - 115,676,635 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,618,067 - 115,676,635 (-)EnsemblGRCm38mm10GRCm38
MGSCv376115,568,591 - 115,626,653 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366115,584,216 - 115,642,122 (-)NCBIMGSCv36mm8
Celera6117,458,696 - 117,516,733 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.62NCBI
Raf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542918,025,932 - 18,049,723 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,980,956 - 18,049,723 (+)NCBIChiLan1.0ChiLan1.0
RAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2212,570,434 - 12,649,715 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1312,575,188 - 12,654,475 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0312,510,084 - 12,590,598 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1312,853,415 - 12,932,871 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl312,853,415 - 12,932,871 (-)Ensemblpanpan1.1panPan2
RAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,892,839 - 5,972,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,892,834 - 5,972,090 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,929,501 - 6,009,310 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,921,808 - 6,000,868 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,921,827 - 6,000,864 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,637,969 - 5,717,035 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,991,105 - 6,070,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,966,879 - 6,046,000 (+)NCBIUU_Cfam_GSD_1.0
Raf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494217,795,336 - 17,819,736 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366021,051,205 - 1,117,096 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366021,089,979 - 1,114,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,580,812 - 68,657,829 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,581,128 - 68,657,911 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21375,848,344 - 75,927,158 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12248,560,270 - 48,643,537 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2248,561,161 - 48,618,020 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041117,857,289 - 117,941,171 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Raf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872204,357 - 269,135 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872204,357 - 284,487 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Raf1
172 total Variants

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:83
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000013831
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat

1 to 10 of 52 rows
RH127364  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,679,257 - 148,679,472 (+)MAPPERmRatBN7.2
Rnor_6.04147,531,764 - 147,531,978NCBIRnor6.0
Rnor_5.04210,818,872 - 210,819,086UniSTSRnor5.0
RGSC_v3.44151,752,307 - 151,752,521UniSTSRGSC3.4
Celera4137,570,223 - 137,570,437UniSTS
RH 3.4 Map15457.3UniSTS
Cytogenetic Map4q42UniSTS
RH142970  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,683,589 - 148,683,722 (+)MAPPERmRatBN7.2
Rnor_6.04147,536,095 - 147,536,227NCBIRnor6.0
Rnor_5.04210,823,203 - 210,823,335UniSTSRnor5.0
RGSC_v3.44151,756,638 - 151,756,770UniSTSRGSC3.4
Celera4137,574,554 - 137,574,686UniSTS
RH 3.4 Map4952.1UniSTS
Cytogenetic Map4q42UniSTS
BI284862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,679,723 - 148,679,931 (+)MAPPERmRatBN7.2
Rnor_6.04147,532,230 - 147,532,437NCBIRnor6.0
Rnor_5.04210,819,338 - 210,819,545UniSTSRnor5.0
RGSC_v3.44151,752,773 - 151,752,980UniSTSRGSC3.4
Celera4137,570,689 - 137,570,896UniSTS
RH 3.4 Map4950.71UniSTS
Cytogenetic Map4q42UniSTS
RH139128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,683,086 - 148,683,210 (+)MAPPERmRatBN7.2
Rnor_6.04147,535,592 - 147,535,715NCBIRnor6.0
Rnor_5.04210,822,700 - 210,822,823UniSTSRnor5.0
RGSC_v3.44151,756,135 - 151,756,258UniSTSRGSC3.4
Celera4137,574,051 - 137,574,174UniSTS
RH 3.4 Map4951.41UniSTS
Cytogenetic Map4q42UniSTS
UniSTS:469819  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,679,655 - 148,680,192 (+)MAPPERmRatBN7.2
Rnor_6.04147,532,162 - 147,532,698NCBIRnor6.0
Rnor_5.04210,819,270 - 210,819,806UniSTSRnor5.0
RGSC_v3.44151,752,705 - 151,753,241UniSTSRGSC3.4
Celera4137,570,621 - 137,571,157UniSTS
Cytogenetic Map4q42UniSTS
Raf1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84150,366,757 - 150,367,307 (+)Marker Load Pipeline
mRatBN7.24148,694,134 - 148,694,684 (+)MAPPERmRatBN7.2
Rnor_6.04147,546,640 - 147,547,189NCBIRnor6.0
Rnor_5.04210,833,748 - 210,834,297UniSTSRnor5.0
RGSC_v3.44151,767,183 - 151,767,732UniSTSRGSC3.4
Celera4137,585,099 - 137,585,648UniSTS
Cytogenetic Map4q42UniSTS
Raf1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84150,352,899 - 150,353,489 (+)Marker Load Pipeline
mRatBN7.24148,680,275 - 148,680,866 (+)MAPPERmRatBN7.2
Rnor_6.04147,532,782 - 147,533,371NCBIRnor6.0
Rnor_5.04210,819,890 - 210,820,479UniSTSRnor5.0
Celera4137,571,241 - 137,571,830UniSTS
Cytogenetic Map4q42UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000013831   ⟹   ENSRNOP00000013831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,679,530 - 148,740,210 (-)Ensembl
Rnor_6.0 Ensembl4147,532,042 - 147,592,699 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105918   ⟹   ENSRNOP00000082418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,679,534 - 148,740,317 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109662   ⟹   ENSRNOP00000092271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,679,534 - 148,740,317 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119226   ⟹   ENSRNOP00000094673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,679,534 - 148,740,317 (-)Ensembl
RefSeq Acc Id: NM_012639   ⟹   NP_036771
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,158 - 150,412,813 (-)NCBI
mRatBN7.24148,679,534 - 148,740,195 (-)NCBI
Rnor_6.04147,532,040 - 147,592,699 (-)NCBI
Rnor_5.04210,819,148 - 210,878,226 (-)NCBI
RGSC_v3.44151,752,583 - 151,775,609 (-)RGD
Celera4137,570,499 - 137,631,125 (-)RGD
Sequence:
RefSeq Acc Id: XM_008763217   ⟹   XP_008761439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,165 - 150,412,675 (-)NCBI
mRatBN7.24148,679,541 - 148,740,265 (-)NCBI
Rnor_6.04147,532,047 - 147,592,769 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763218   ⟹   XP_008761440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,165 - 150,412,182 (-)NCBI
mRatBN7.24148,679,635 - 148,739,511 (-)NCBI
Rnor_6.04147,532,047 - 147,592,039 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107056   ⟹   XP_038962984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,165 - 150,412,299 (-)NCBI
mRatBN7.24148,679,635 - 148,739,684 (-)NCBI
RefSeq Acc Id: XM_039107057   ⟹   XP_038962985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,165 - 150,412,133 (-)NCBI
mRatBN7.24148,679,635 - 148,739,574 (-)NCBI
RefSeq Acc Id: XM_063285558   ⟹   XP_063141628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,165 - 150,412,299 (-)NCBI
RefSeq Acc Id: XM_063285559   ⟹   XP_063141629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,165 - 150,375,542 (-)NCBI
RefSeq Acc Id: XM_063285560   ⟹   XP_063141630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,352,165 - 150,375,542 (-)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_036771   ⟸   NM_012639
- UniProtKB: P11345 (UniProtKB/Swiss-Prot),   A6IKZ0 (UniProtKB/TrEMBL),   A0A8L2Q6F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761439   ⟸   XM_008763217
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWZ7 (UniProtKB/TrEMBL),   A0A8L2Q6F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761440   ⟸   XM_008763218
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWZ7 (UniProtKB/TrEMBL),   A0A8L2Q6F4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013831   ⟸   ENSRNOT00000013831
RefSeq Acc Id: XP_038962984   ⟸   XM_039107056
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWZ7 (UniProtKB/TrEMBL),   A0A8L2Q6F4 (UniProtKB/TrEMBL)
Phorbol-ester/DAG-type   Protein kinase   RBD

Name Modeler Protein Id AA Range Protein Structure
AF-P11345-F1-model_v2 AlphaFold P11345 1-648 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13693324
Promoter ID:EPDNEW_R3849
Type:initiation region
Name:Raf1_1
Description:Raf-1 proto-oncogene, serine/threonine kinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04147,592,708 - 147,592,768EPDNEW


1 to 40 of 51 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-43318 BioCyc
Ensembl Genes ENSRNOG00000010153 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013831 ENTREZGENE
  ENSRNOT00000105918 ENTREZGENE
  ENSRNOT00000109662.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.60.20 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
  Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599540 IMAGE-MGC_LOAD
InterPro C1-like_sf UniProtKB/Swiss-Prot
  DAG/PE-bd UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  PE/DAG-bd UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  RBD_dom UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
  Ser/Thr_Kinases-Pseudokinases UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
KEGG Report rno:24703 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72519 IMAGE-MGC_LOAD
NCBI Gene 24703 ENTREZGENE
PANTHER RAF PROTO-ONCOGENE SERINE_THREONINE-PROTEIN KINASE UniProtKB/Swiss-Prot
  SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED UniProtKB/Swiss-Prot
Pfam C1_1 UniProtKB/Swiss-Prot
  Pkinase UniProtKB/Swiss-Prot
  RBD UniProtKB/Swiss-Prot
PharmGKB RAF1 RGD
PhenoGen Raf1 PhenoGen
PRINTS DAGPEDOMAIN UniProtKB/Swiss-Prot
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
  RBD UniProtKB/Swiss-Prot
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010153 RatGTEx
SMART RBD UniProtKB/Swiss-Prot
  S_TKc UniProtKB/Swiss-Prot
1 to 40 of 51 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Raf1  Raf-1 proto-oncogene, serine/threonine kinase  Raf1  v-raf-leukemia viral oncogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Raf1  v-raf-leukemia viral oncogene 1  Raf1  v-raf-1 murine leukemia viral oncogene homolog 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Raf1  v-raf-1 murine leukemia viral oncogene homolog 1    murine leukemia viral (v-raf-1) oncogene homolog 1 (3611-MSV)  Name updated 1299863 APPROVED
2002-06-10 Raf1  v-raf-1 murine leukemia viral oncogene homolog 1      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_function phosphorylates Map2k1 and Mek2 70317
gene_function phosphorylates Map2k1 and Mek2 70441
gene_process may activate Mapk1 and Mapk3 in fetal heart development 70317
gene_process may activate Mapk1 and Mapk3 in fetal heart development 70441