Plcb1 (phospholipase C beta 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Plcb1 (phospholipase C beta 1) Rattus norvegicus
Analyze
Symbol: Plcb1
Name: phospholipase C beta 1
RGD ID: 3344
Description: Enables calcium ion binding activity; identical protein binding activity; and phosphatidylinositol phospholipase C activity. Involved in several processes, including cellular response to glyceraldehyde; cellular response to ionomycin; and learning or memory. Predicted to be located in chromatin and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in several cellular components, including GABA-ergic synapse; nuclear speck; and postsynaptic cytosol. Biomarker of myocardial infarction. Human ortholog(s) of this gene implicated in Alzheimer's disease; developmental and epileptic encephalopathy 12; and myelodysplastic syndrome. Orthologous to human PLCB1 (phospholipase C beta 1); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH (+)-schisandrin B; (R)-noradrenaline; 1-(3-chlorophenyl)piperazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1; 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-1; Phosphb; phosphoinositide phospholipase C; phosphoinositide phospholipase C-beta-1; phospholipase C, beta 1; phospholipase C, beta 1 (phosphoinositide-specific); phospholipase C-beta-1; Phospholipase C-beta1; phospholipase C-I; PLC'1; PLC-154; PLC-beta-1; PLC-I; PLCbeta1; RATPHOSPHB
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Plcb1Tn(pb-Bhr2)1Wmukf  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83142,512,765 - 143,224,042 (+)NCBIGRCr8
mRatBN7.23122,059,988 - 122,772,896 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3122,060,031 - 122,772,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3125,952,538 - 126,679,203 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03134,555,297 - 135,266,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03132,208,716 - 132,934,812 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03127,721,244 - 128,419,565 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3128,155,069 - 128,419,545 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03134,211,557 - 134,908,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43122,797,718 - 123,523,675 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13122,703,321 - 123,430,863 (+)NCBI
Celera3120,808,920 - 121,513,252 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratacute myeloid leukemia severityISOPLCB1 (Homo sapiens)11535940mRNA:increased expression:blood (human)RGD 
Plcb1RatAlzheimer's disease  ISOPLCB1 (Homo sapiens)13825140 RGD 
Plcb1Ratmyelodysplastic syndrome severityISOPLCB1 (Homo sapiens)11535164mRNA:decreased expression:bone marrow more ...RGD 
Plcb1Ratmyelodysplastic syndrome treatmentISOPLCB1 (Homo sapiens)11535956 RGD 
Plcb1Ratmyocardial infarction  IEP 2314514protein:increased expression:heartRGD 
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1RatALAGILLE SYNDROME 1  ISOPLCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Alagille syndrome due to a JAG1 point mutationClinVarPMID:10213047 more ...
Plcb1Ratbenign epilepsy with centrotemporal spikes  ISOPLCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Rolandic epilepsyClinVarPMID:29358611
Plcb1Ratcongenital myasthenic syndrome 18  ISOPLCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: MYASTHENIC SYNDROME more ...ClinVarPMID:28492532 and PMID:32733715
Plcb1Ratdevelopmental and epileptic encephalopathy 1  ISOPLCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 1ClinVarPMID:25741868
Plcb1Ratdevelopmental and epileptic encephalopathy 12  ISOPLCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
Plcb1Ratdevelopmental and epileptic encephalopathy 12  ISOPLCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10213047 more ...
Plcb1Ratgenetic disease  ISOPLCB1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:17576681 more ...
Plcb1Ratvisual epilepsy  ISOPLCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:18414213 more ...
Plcb1RatWest syndrome  ISOPLCB1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:18414213 more ...
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1RatColonic Neoplasms  ISOPLCB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15059925
Plcb1Ratmyelodysplastic syndrome  ISOPLCB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19805378
Plcb1RatPain  ISOPLCB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16405873
Plcb1Ratschizophrenia  ISOPLCB1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17667964
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1RatAlzheimer's disease  ISSPlcb1 (Mus musculus)13592920OMIM:104300 more ...MouseDO 
Plcb1Ratschizophrenia  ISSPlcb1 (Mus musculus)13592920OMIM:181500MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratdevelopmental and epileptic encephalopathy 12  ISOPLCB1 (Homo sapiens)7240710 OMIM 

1 to 20 of 223 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of PLCB1 mRNA]CTDPMID:31150632
Plcb1Rat(R)-noradrenaline increases activityEXP 6480464Norepinephrine results in increased activity of PLCB1 proteinCTDPMID:16714034
Plcb1Rat(R)-noradrenaline multiple interactionsEXP 64804641-(6-((3-methoxyestra-1 more ...CTDPMID:16714034 and PMID:19225867
Plcb1Rat(R)-noradrenaline increases expressionEXP 6480464Norepinephrine results in increased expression of PLCB1 mRNA and Norepinephrine results in increased expression of PLCB1 proteinCTDPMID:16714034 and PMID:19225867
Plcb1Rat1,2-dichloroethane decreases expressionISOPlcb1 (Mus musculus)6480464ethylene dichloride results in decreased expression of PLCB1 mRNACTDPMID:28960355
Plcb1Rat1-(3-chlorophenyl)piperazine increases expressionEXP 64804641-(3-chlorophenyl)piperazine results in increased expression of PLCB1 mRNA and 1-(3-chlorophenyl)piperazine results in increased expression of PLCB1 proteinCTDPMID:12527476
Plcb1Rat17beta-estradiol increases expressionISOPLCB1 (Homo sapiens)6480464Estradiol results in increased expression of PLCB1 mRNACTDPMID:23019147 and PMID:36828454
Plcb1Rat17beta-estradiol decreases expressionISOPlcb1 (Mus musculus)6480464Estradiol results in decreased expression of PLCB1 mRNACTDPMID:39298647
Plcb1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:21394737
Plcb1Rat2,2',5,5'-tetrachlorobiphenyl increases expressionISOPLCB1 (Homo sapiens)64804642 more ...CTDPMID:21703328
Plcb1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPLCB1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of PLCB1 mRNACTDPMID:17101203
Plcb1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PLCB1 mRNACTDPMID:34747641
Plcb1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPlcb1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PLCB1 mRNACTDPMID:26290441
Plcb1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPlcb1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PLCB1 mRNACTDPMID:21570461 and PMID:26377647
Plcb1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PLCB1 mRNACTDPMID:21215274
Plcb1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of PLCB1 mRNACTDPMID:22298810 and PMID:32109520
Plcb1Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of PLCB1 mRNACTDPMID:21346803
Plcb1Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of PLCB1 mRNACTDPMID:21346803
Plcb1Rat2-palmitoylglycerol increases expressionISOPLCB1 (Homo sapiens)64804642-palmitoylglycerol results in increased expression of PLCB1 mRNACTDPMID:37199045
Plcb1Rat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:32119087

1 to 20 of 223 rows

Biological Process
1 to 20 of 99 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratactivation of meiosis involved in egg activation involved_inISOPlcb1 (Mus musculus)1624291 PMID:14499343RGDPMID:14499343
Plcb1Ratactivation of meiosis involved in egg activation involved_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratactivation of meiosis involved in egg activation involved_inISSUniProtKB:Q9Z1B31600115GO_REF:0000024BHF-UCLGO_REF:0000024
Plcb1Ratcellular response to fluoride  IDA 8554253aluminum fluoride AlF4-RGD 
Plcb1Ratcellular response to glyceraldehyde  IDA 8554253 RGD 
Plcb1Ratcellular response to ionomycin  IDA 8554253 RGD 
Plcb1Ratcellular response to vasopressin  IDA 8554253 RGD 
Plcb1Ratcerebral cortex development involved_inISSUniProtKB:Q9Z1B31600115GO_REF:0000024BHF-UCLGO_REF:0000024
Plcb1Ratcerebral cortex development involved_inISOPlcb1 (Mus musculus)1624291 PMID:11224545RGDPMID:11224545
Plcb1Ratcerebral cortex development involved_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratfat cell differentiation involved_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratfat cell differentiation involved_inISOPlcb1 (Mus musculus)1624291 PMID:19385066RGDPMID:19385066
Plcb1RatG protein-coupled acetylcholine receptor signaling pathway involved_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1RatG protein-coupled acetylcholine receptor signaling pathway involved_inISOPlcb1 (Mus musculus)1624291 PMID:9305844RGDPMID:9305844
Plcb1RatG protein-coupled receptor signaling pathway involved_inIBAMGI:104778 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Plcb1RatG2/M transition of mitotic cell cycle involved_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1RatG2/M transition of mitotic cell cycle involved_inISOPlcb1 (Mus musculus)1624291 PMID:19028838RGDPMID:19028838
Plcb1Ratglutamate receptor signaling pathway involved_inISOPlcb1 (Mus musculus)1624291 PMID:11224545RGDPMID:11224545
Plcb1Ratglutamate receptor signaling pathway involved_inISSUniProtKB:Q9Z1B31600115GO_REF:0000024BHF-UCLGO_REF:0000024
Plcb1Ratglutamate receptor signaling pathway involved_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 99 rows

Cellular Component
1 to 20 of 30 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratchromatin located_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratchromatin located_inISOPlcb1 (Mus musculus)1624291 PMID:19028838RGDPMID:19028838
Plcb1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Plcb1Ratcytoplasm located_inISOPlcb1 (Mus musculus)1624291 PMID:15849202 and PMID:17725492RGDPMID:15849202 and PMID:17725492
Plcb1Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Plcb1Ratcytoplasm located_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratcytoplasm is_active_inIBAMGI:104778 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Plcb1Ratcytoplasm located_inIEAUniProtKB:Q9NQ66 and ensembl:ENSP000003381851600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratcytoplasm located_inISOPLCB1 (Homo sapiens)1624291 PMID:11118617RGDPMID:11118617
Plcb1Ratcytoplasm located_inISSUniProtKB:Q9Z1B31600115GO_REF:0000024BHF-UCLGO_REF:0000024
Plcb1RatGABA-ergic synapse is_active_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1RatGABA-ergic synapse is_active_inISOPlcb1 (Mus musculus)1624291 PMID:15664177RGDPMID:15664177
Plcb1Ratglutamatergic synapse is_active_inIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratglutamatergic synapse is_active_inISOPlcb1 (Mus musculus)1624291 PMID:16339037RGDPMID:16339037
Plcb1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Plcb1Ratnuclear membrane located_inIEAUniProtKB-SubCell:SL-01821600115GO_REF:0000044UniProtGO_REF:0000044
Plcb1Ratnuclear speck located_inISSUniProtKB:Q9Z1B31600115GO_REF:0000024BHF-UCLGO_REF:0000024
Plcb1Ratnuclear speck located_inISOPlcb1 (Mus musculus)1624291 PMID:17022104RGDPMID:17022104
Plcb1Ratnuclear speck is_active_inIBAMGI:97613 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Plcb1Ratnuclear speck located_inISOPLCB1 (Homo sapiens)1624291 PMID:12799190RGDPMID:12799190
1 to 20 of 30 rows

Molecular Function
1 to 20 of 32 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratcalcium ion binding enablesIEAInterPro:IPR014815 and InterPro:IPR0162801600115GO_REF:0000002InterProGO_REF:0000002
Plcb1Ratcalcium ion binding enablesIDA 8554253PMID:11377826BHF-UCL 
Plcb1Ratcalcium ion binding enablesIEAUniRule:UR0009547621600115GO_REF:0000104UniProtGO_REF:0000104
Plcb1Ratcalmodulin binding enablesIEAUniProtKB:Q9NQ66 and ensembl:ENSP000003381851600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratcalmodulin binding enablesIBAPANTHER:PTN002569936 and UniProtKB:Q9NQ661600115GO_REF:0000033GO_CentralGO_REF:0000033
Plcb1Ratcalmodulin binding enablesISOPLCB1 (Homo sapiens)1624291 PMID:12821674RGDPMID:12821674
Plcb1Ratenzyme binding enablesISOPLCB1 (Homo sapiens)1624291UniProtKB:P52824 and PMID:12799190RGDPMID:12799190
Plcb1Ratenzyme binding enablesIEAUniProtKB:Q9NQ66 and ensembl:ENSP000003381851600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1RatGTPase activator activity enablesIEAUniProtKB:Q9NQ66 and ensembl:ENSP000003381851600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1RatGTPase activator activity enablesISOPLCB1 (Homo sapiens)1624291 PMID:1322796RGDPMID:1322796
Plcb1Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Plcb1Ratidentical protein binding  IPIPlcb1 (Rattus norvegicus)2314506homodimerizationRGD 
Plcb1Ratidentical protein binding enablesIPIUniProtKB:P106872314506PMID:16763092BHF-UCL 
Plcb1Ratlamin binding enablesISOPlcb1 (Mus musculus)1624291UniProtKB:P14733 and PMID:19028838RGDPMID:19028838
Plcb1Ratlamin binding enablesIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Plcb1Ratphosphatidylinositol-4,5-bisphosphate binding enablesISOPLCB1 (Homo sapiens)1624291 PMID:12799190RGDPMID:12799190
Plcb1Ratphosphatidylinositol-4,5-bisphosphate binding enablesIEAUniProtKB:Q9NQ66 and ensembl:ENSP000003381851600115GO_REF:0000107EnsemblGO_REF:0000107
Plcb1Ratphosphatidylinositol-4,5-bisphosphate phospholipase C activity  IDA 1582559 RGD 
Plcb1Ratphosphatidylinositol-4,5-bisphosphate phospholipase C activity enablesIEAUniProtKB:Q9Z1B3 and ensembl:ENSMUSP000001057431600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 32 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1RatG protein mediated signaling pathway via Galphaq family  ISOPLCB1 (Homo sapiens)5131495 RGD 
Plcb1Ratprotein kinase C (PKC) signaling pathway   ISOPLCB1 (Homo sapiens)5131502 RGD 

Imported Annotations - SMPDB

1 to 20 of 39 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratacebutolol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00296
Plcb1Ratadrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway   ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00296
Plcb1Ratamiodarone pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00665
Plcb1Ratamlodipine pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00376
Plcb1Ratatenolol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00298
Plcb1Ratbetaxolol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00299
Plcb1Ratbisoprolol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00300
Plcb1Ratbupranolol drug pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00670
Plcb1Ratbupranolol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00670
Plcb1Ratcarvedilol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00367
Plcb1Ratdiltiazem pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00359
Plcb1Ratdisopyramide pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00325
Plcb1Ratdobutamine pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00662
Plcb1Ratesmolol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00301
Plcb1Ratflecainde pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00331
Plcb1Ratfosphenytoin pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00326
Plcb1Ratibutilide pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00332
Plcb1Ratisoprenaline pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00663
Plcb1Ratisradipine pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00378
Plcb1Ratlevobunolol pharmacodynamics pathway  ISOPLCB1 (Homo sapiens)10402751 SMPDBSMP:00666
1 to 20 of 39 rows

Imported Annotations - KEGG (archival)

1 to 14 of 14 rows
1 to 14 of 14 rows

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratendothelin signaling pathway  ISOPLCB1 (Homo sapiens)6484113 PIDPID:200005
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Plcb1Ratabnormal depression-related behavior  IDA 1582557 RGD 

1 to 20 of 34 rows
#
Reference Title
Reference Citation
1. Two forms of phospholipase C-beta 1 generated by alternative splicing. Bahk YY, etal., J Biol Chem 1994 Mar 18;269(11):8240-5.
2. G-protein-activated phospholipase C-beta, new partners for cell polarity proteins Par3 and Par6. Cai Y, etal., Oncogene. 2005 Jun 16;24(26):4293-300.
3. Phosphoinositide phospholipase Cbeta1 (PI-PLCbeta1) gene in myelodysplastic syndromes and cytogenetically normal acute myeloid leukemia: not a deletion, but increased PI-PLCbeta1 expression is an independent prognostic factor. Damm F, etal., J Clin Oncol. 2010 Aug 1;28(22):e384-7; author reply e388-9. doi: 10.1200/JCO.2010.28.6971. Epub 2010 Jun 1.
4. Stimulation of 5-HT(2) receptors in prefrontal pyramidal neurons inhibits Ca(v)1.2 L type Ca(2+) currents via a PLCbeta/IP3/calcineurin signaling cascade. Day M, etal., J Neurophysiol 2002 May;87(5):2490-504.
5. Metabotropic glutamate receptor 5 (mGluR5)-mediated phosphoinositide hydrolysis and NMDA-potentiating effects are blunted in the striatum of aged rats: a possible additional mechanism in striatal senescence. Domenici MR, etal., Eur J Neurosci 2003 May;17(10):2047-55.
6. Stimulation of phospholipase Cbeta by membrane interactions, interdomain movement, and G protein binding--how many ways can you activate an enzyme? Drin G and Scarlata S, Cell Signal. 2007 Jul;19(7):1383-92. Epub 2007 Apr 29.
7. Single and repeated stress-induced modulation of phospholipase C catalytic activity and expression: role in LH behavior. Dwivedi Y, etal., Neuropsychopharmacology. 2005 Mar;30(3):473-83.
8. Real-time PCR as a tool for quantitative analysis of PI-PLCbeta1 gene expression in myelodysplastic syndrome. Follo MY, etal., Int J Mol Med. 2006 Aug;18(2):267-71.
9. Synergistic induction of PI-PLCbeta1 signaling by azacitidine and valproic acid in high-risk myelodysplastic syndromes. Follo MY, etal., Leukemia. 2011 Feb;25(2):271-80. doi: 10.1038/leu.2010.266. Epub 2010 Nov 26.
10. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
11. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
12. Phospholipase C-beta1 expression correlates with neuronal differentiation and synaptic plasticity in rat somatosensory cortex. Hannan AJ, etal., Neuropharmacology. 1998 Apr-May;37(4-5):593-605.
13. Expression of Gq alpha and PLC-beta in scar and border tissue in heart failure due to myocardial infarction. Ju H, etal., Circulation. 1998 Mar 10;97(9):892-9.
14. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
15. Fuel and hormone regulation of phospholipase C beta 1 and delta 1 overexpressed in RINm5F pancreatic beta cells. Kelley GG, etal., Mol Cell Endocrinol. 2001 May 25;177(1-2):107-15.
16. Discrete subcellular localization of phosphoinositidase C beta, gamma and delta in PC12 rat pheochromocytoma cells. Mazzoni M, etal., Biochem Biophys Res Commun. 1992 Aug 31;187(1):114-20.
17. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
18. Effects of hyperoxia and acrylonitrile on the phospholipase C isozyme protein levels in rat heart and brain. Nagasawa K, etal., Life Sci 2003 Aug 1;73(11):1453-62.
19. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
1 to 20 of 34 rows
PMID:1322796   PMID:3390863   PMID:8454637   PMID:8872139   PMID:9187110   PMID:9305844   PMID:9444325   PMID:9500449   PMID:9762362   PMID:10913438   PMID:11118617   PMID:11224545  
PMID:11464583   PMID:11743656   PMID:12031797   PMID:12612139   PMID:12704654   PMID:12799190   PMID:12821674   PMID:14499343   PMID:15174099   PMID:15474310   PMID:15664177   PMID:15849202  
PMID:16339037   PMID:17022104   PMID:17065107   PMID:17634366   PMID:17725492   PMID:18390926   PMID:18493969   PMID:18692062   PMID:18694821   PMID:18820027   PMID:19028838   PMID:19199708  
PMID:19347873   PMID:19385066   PMID:19538471   PMID:19564249   PMID:19687358   PMID:19896516   PMID:20393598   PMID:21124736   PMID:21148417   PMID:21338571   PMID:22735577   PMID:22871113  
PMID:23376485   PMID:23503970   PMID:23665500   PMID:24760983   PMID:25185819   PMID:26521046   PMID:26747500   PMID:27353086   PMID:27379421   PMID:27624933   PMID:29401590   PMID:32247043  
PMID:34625112   PMID:35469845  



Plcb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83142,512,765 - 143,224,042 (+)NCBIGRCr8
mRatBN7.23122,059,988 - 122,772,896 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3122,060,031 - 122,772,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3125,952,538 - 126,679,203 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03134,555,297 - 135,266,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03132,208,716 - 132,934,812 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03127,721,244 - 128,419,565 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3128,155,069 - 128,419,545 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03134,211,557 - 134,908,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43122,797,718 - 123,523,675 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13122,703,321 - 123,430,863 (+)NCBI
Celera3120,808,920 - 121,513,252 (+)NCBICelera
Cytogenetic Map3q36NCBI
PLCB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38208,132,266 - 8,884,900 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl208,077,251 - 8,968,360 (+)EnsemblGRCh38hg38GRCh38
GRCh37208,112,913 - 8,865,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36208,061,296 - 8,813,547 (+)NCBINCBI36Build 36hg18NCBI36
Build 34208,061,295 - 8,813,547NCBI
Celera208,182,881 - 8,935,778 (+)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef208,064,325 - 8,817,514 (+)NCBIHuRef
CHM1_1208,113,481 - 8,866,748 (+)NCBICHM1_1
T2T-CHM13v2.0208,174,228 - 8,928,072 (+)NCBIT2T-CHM13v2.0
Plcb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392134,628,084 - 135,317,178 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2134,627,987 - 135,317,178 (+)EnsemblGRCm39 Ensembl
GRCm382134,786,164 - 135,475,258 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2134,786,067 - 135,475,258 (+)EnsemblGRCm38mm10GRCm38
MGSCv372134,611,900 - 135,300,994 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362134,477,971 - 135,163,863 (+)NCBIMGSCv36mm8
Celera2135,990,426 - 136,678,579 (+)NCBICelera
Cytogenetic Map2F3NCBI
cM Map265.66NCBI
Plcb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541518,210,662 - 18,915,158 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541518,210,608 - 18,915,099 (+)NCBIChiLan1.0ChiLan1.0
PLCB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2219,032,494 - 9,784,094 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1209,029,321 - 9,780,921 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0208,106,665 - 8,858,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1207,887,773 - 8,636,019 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl207,887,960 - 8,636,019 (+)Ensemblpanpan1.1panPan2
PLCB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12413,337,285 - 13,996,218 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2413,322,296 - 13,995,539 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2413,161,289 - 13,837,418 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02413,744,297 - 14,413,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2413,745,444 - 14,413,611 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12413,354,731 - 14,024,546 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02413,455,648 - 14,132,727 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02413,793,592 - 14,463,037 (-)NCBIUU_Cfam_GSD_1.0
Plcb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640162,117,602 - 162,822,762 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648510,548,966 - 11,253,761 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648510,548,966 - 11,254,139 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLCB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1717,007,261 - 17,745,313 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11717,007,197 - 17,745,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21719,691,473 - 19,950,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLCB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1229,242,601 - 29,994,238 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl229,242,425 - 29,496,793 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607114,560,873 - 15,334,958 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plcb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247419,031,204 - 9,856,556 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247419,030,817 - 9,859,597 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Plcb1
4683 total Variants

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:60
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000006389, ENSRNOT00000051184
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat

1 to 10 of 29 rows
D3Wox22  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83143,224,340 - 143,224,552 (+)Marker Load Pipeline
mRatBN7.23122,771,586 - 122,771,840 (+)MAPPERmRatBN7.2
mRatBN7.23122,771,586 - 122,771,798 (+)MAPPERmRatBN7.2
Rnor_6.03128,419,864 - 128,420,193NCBIRnor6.0
Rnor_6.03128,419,864 - 128,420,075NCBIRnor6.0
Rnor_5.03134,908,640 - 134,908,969UniSTSRnor5.0
Rnor_5.03134,908,640 - 134,908,851UniSTSRnor5.0
RGSC_v3.43123,523,994 - 123,524,205UniSTSRGSC3.4
Celera3121,513,571 - 121,513,784UniSTS
Cytogenetic Map3q36UniSTS
D3Rat158  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83142,910,625 - 142,910,779 (+)Marker Load Pipeline
mRatBN7.23122,457,858 - 122,458,012 (+)MAPPERmRatBN7.2
Rnor_6.03128,120,751 - 128,120,904NCBIRnor6.0
Rnor_5.03134,608,322 - 134,608,475UniSTSRnor5.0
RGSC_v3.43123,202,756 - 123,203,100RGDRGSC3.4
RGSC_v3.43123,202,807 - 123,202,960UniSTSRGSC3.4
RGSC_v3.13123,108,380 - 123,108,533RGD
Celera3121,205,948 - 121,206,101UniSTS
RH 3.4 Map31069.6UniSTS
RH 3.4 Map31069.6RGD
RH 2.0 Map3718.3RGD
SHRSP x BN Map359.6699RGD
Cytogenetic Map3q36UniSTS
D3Mco10  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83142,864,478 - 142,864,803 (+)Marker Load Pipeline
mRatBN7.23122,411,707 - 122,412,032 (+)MAPPERmRatBN7.2
Rnor_6.03128,074,425 - 128,074,746NCBIRnor6.0
Rnor_5.03134,561,996 - 134,562,317UniSTSRnor5.0
RGSC_v3.43123,156,618 - 123,156,941RGDRGSC3.4
RGSC_v3.43123,156,620 - 123,156,941UniSTSRGSC3.4
RGSC_v3.13123,062,191 - 123,062,514RGD
Celera3121,159,818 - 121,160,139UniSTS
Cytogenetic Map3q36UniSTS
A007B46  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,769,721 - 122,769,918 (+)MAPPERmRatBN7.2
Rnor_6.03128,417,999 - 128,418,195NCBIRnor6.0
Rnor_5.03134,906,775 - 134,906,971UniSTSRnor5.0
RGSC_v3.43123,522,129 - 123,522,325UniSTSRGSC3.4
Celera3121,511,706 - 121,511,902UniSTS
Cytogenetic Map3q36UniSTS
AI132408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,772,417 - 122,772,691 (+)MAPPERmRatBN7.2
Rnor_6.03128,420,813 - 128,421,086NCBIRnor6.0
Rnor_5.03134,909,589 - 134,909,862UniSTSRnor5.0
RGSC_v3.43123,524,825 - 123,525,098UniSTSRGSC3.4
Celera3121,514,404 - 121,514,677UniSTS
Cytogenetic Map3q36UniSTS
RH143123  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,301,585 - 122,301,695 (+)MAPPERmRatBN7.2
Rnor_6.03127,963,136 - 127,963,245NCBIRnor6.0
Rnor_5.03134,451,872 - 134,451,981UniSTSRnor5.0
RGSC_v3.43123,042,363 - 123,042,472UniSTSRGSC3.4
Celera3121,050,653 - 121,050,762UniSTS
RH 3.4 Map31074.6UniSTS
Cytogenetic Map3q36UniSTS
BE107717  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera3121,070,507 - 121,070,663UniSTS
RH 3.4 Map31077.7UniSTS
Cytogenetic Map3q36UniSTS
RH135213  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,431,214 - 122,431,409 (+)MAPPERmRatBN7.2
Rnor_6.03128,093,928 - 128,094,122NCBIRnor6.0
Rnor_5.03134,581,499 - 134,581,693UniSTSRnor5.0
RGSC_v3.43123,175,965 - 123,176,159UniSTSRGSC3.4
Celera3121,179,319 - 121,179,513UniSTS
RH 3.4 Map31069.6UniSTS
Cytogenetic Map3q36UniSTS
RH138108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,266,922 - 122,267,059 (+)MAPPERmRatBN7.2
Rnor_6.03127,928,459 - 127,928,595NCBIRnor6.0
Rnor_5.03134,417,629 - 134,417,765UniSTSRnor5.0
RGSC_v3.43123,004,632 - 123,004,768UniSTSRGSC3.4
Celera3121,015,901 - 121,016,037UniSTS
RH 3.4 Map31074.7UniSTS
Cytogenetic Map3q36UniSTS
RH138884  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,269,326 - 122,269,498 (+)MAPPERmRatBN7.2
Rnor_6.03127,930,863 - 127,931,034NCBIRnor6.0
Rnor_5.03134,420,033 - 134,420,204UniSTSRnor5.0
RGSC_v3.43123,007,036 - 123,007,207UniSTSRGSC3.4
Celera3121,018,305 - 121,018,476UniSTS
RH 3.4 Map31074.7UniSTS
Cytogenetic Map3q36UniSTS
AU048499  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,681,618 - 122,681,812 (+)MAPPERmRatBN7.2
Rnor_6.03128,333,610 - 128,333,805NCBIRnor6.0
Rnor_5.03134,820,853 - 134,821,048UniSTSRnor5.0
RGSC_v3.43123,432,866 - 123,433,061UniSTSRGSC3.4
Celera3121,424,544 - 121,424,739UniSTS
Cytogenetic Map3q36UniSTS
AU048959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,685,104 - 122,685,277 (+)MAPPERmRatBN7.2
Rnor_6.03128,337,098 - 128,337,270NCBIRnor6.0
Rnor_5.03134,824,341 - 134,824,513UniSTSRnor5.0
RGSC_v3.43123,436,354 - 123,436,526UniSTSRGSC3.4
Celera3121,428,032 - 121,428,204UniSTS
Cytogenetic Map3q36UniSTS
D8S1807  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23122,135,471 - 122,136,109 (+)MAPPERmRatBN7.2
mRatBN7.21573,241,271 - 73,242,912 (+)MAPPERmRatBN7.2
Rnor_6.01580,810,982 - 80,812,622NCBIRnor6.0
Rnor_6.03127,796,967 - 127,797,604NCBIRnor6.0
Rnor_5.01584,349,172 - 84,350,812UniSTSRnor5.0
Rnor_5.03134,287,614 - 134,288,251UniSTSRnor5.0
RGSC_v3.43122,874,247 - 122,874,884UniSTSRGSC3.4
RGSC_v3.41579,872,788 - 79,874,428UniSTSRGSC3.4
Celera1572,522,594 - 72,524,234UniSTS
Celera3120,884,308 - 120,884,945UniSTS
Cytogenetic Map3q36UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000006389   ⟹   ENSRNOP00000006389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3122,060,031 - 122,771,268 (+)Ensembl
Rnor_6.0 Ensembl3128,155,117 - 128,419,545 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000051184   ⟹   ENSRNOP00000042533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3122,060,031 - 122,772,869 (+)Ensembl
Rnor_6.0 Ensembl3128,155,069 - 128,349,864 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098292   ⟹   ENSRNOP00000085919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3122,111,601 - 122,689,381 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113879   ⟹   ENSRNOP00000078760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3122,491,581 - 122,772,869 (+)Ensembl
RefSeq Acc Id: NM_001077641   ⟹   NP_001071109
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83142,512,765 - 143,224,042 (+)NCBI
mRatBN7.23122,059,999 - 122,771,288 (+)NCBI
Rnor_6.03127,721,244 - 128,419,545 (+)NCBI
Rnor_5.03134,211,557 - 134,908,321 (+)NCBI
RGSC_v3.43122,797,718 - 123,523,675 (+)RGD
Celera3120,808,920 - 121,513,252 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591467   ⟹   XP_017446956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83142,513,191 - 143,222,468 (+)NCBI
mRatBN7.23122,059,988 - 122,772,896 (+)NCBI
Rnor_6.03127,721,389 - 128,419,565 (+)NCBI
Sequence:
Protein RefSeqs NP_001071109 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446956 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41885 (Get FASTA)   NCBI Sequence Viewer  
  EDL80287 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006389
  ENSRNOP00000006389.7
  ENSRNOP00000042533
GenBank Protein P10687 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001071109   ⟸   NM_001077641
- UniProtKB: P10687 (UniProtKB/Swiss-Prot),   A6HQI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446956   ⟸   XM_017591467
- Peptide Label: isoform X1
- UniProtKB: R9PXY3 (UniProtKB/TrEMBL),   A0A8I6A2P4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006389   ⟸   ENSRNOT00000006389
Ensembl Acc Id: ENSRNOP00000042533   ⟸   ENSRNOT00000051184
Ensembl Acc Id: ENSRNOP00000085919   ⟸   ENSRNOT00000098292
C2   PI-PLC X-box   PI-PLC Y-box

Name Modeler Protein Id AA Range Protein Structure
AF-P10687-F1-model_v2 AlphaFold P10687 1-1216 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 59 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47740 BioCyc
BioCyc Pathway PWY-6351 [D-myo-inositol (1,4,5)-trisphosphate biosynthesis] BioCyc
  PWY-6367 [D-myo-inositol-5-phosphate metabolism] BioCyc
  PWY-8052 [2-arachidonoylglycerol biosynthesis] BioCyc
BioCyc Pathway Image PWY-6351 BioCyc
  PWY-6367 BioCyc
  PWY-8052 BioCyc
Ensembl Genes ENSRNOG00000004810 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006389 ENTREZGENE
  ENSRNOT00000006389.7 UniProtKB/Swiss-Prot
  ENSRNOT00000051184 ENTREZGENE
Gene3D-CATH 1.20.1230.10 UniProtKB/Swiss-Prot
  2.30.29.240 UniProtKB/Swiss-Prot
  2.60.40.150 UniProtKB/Swiss-Prot
  3.20.20.190 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
InterPro C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  PI-PLC_fam UniProtKB/Swiss-Prot
  PLC-beta UniProtKB/Swiss-Prot
  PLC-beta1 UniProtKB/Swiss-Prot
  PLC-beta_C UniProtKB/Swiss-Prot
  PLC-beta_C_sf UniProtKB/Swiss-Prot
  PLC-beta_PH UniProtKB/Swiss-Prot
  PLC-like_Pdiesterase_TIM-brl UniProtKB/Swiss-Prot
  PLCB1-4-like_EFh UniProtKB/Swiss-Prot
  PLipase_C_PInositol-sp_X_dom UniProtKB/Swiss-Prot
  PLipase_C_Pinositol-sp_Y UniProtKB/Swiss-Prot
KEGG Report rno:24654 UniProtKB/Swiss-Prot
NCBI Gene 24654 ENTREZGENE
PANTHER PTHR10336 UniProtKB/Swiss-Prot
  PTHR10336:SF12 UniProtKB/Swiss-Prot
Pfam PH_14 UniProtKB/Swiss-Prot
  PI-PLC-X UniProtKB/Swiss-Prot
  PI-PLC-Y UniProtKB/Swiss-Prot
  PLC-beta_C UniProtKB/Swiss-Prot
  PLCB1-4-like_EFh UniProtKB/Swiss-Prot
PhenoGen Plcb1 PhenoGen
PIRSF PLC-beta UniProtKB/Swiss-Prot
1 to 40 of 59 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Plcb1  phospholipase C beta 1  Plcb1  phospholipase C, beta 1 (phosphoinositide-specific)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Plcb1  phospholipase C, beta 1 (phosphoinositide-specific)  Plcb1  phospholipase C, beta 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 Plcb1  phospholipase C, beta 1  LOC688139  similar to 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta 1 (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154)  Data merged from RGD:1592421 1643240 APPROVED
2006-11-20 LOC688139  similar to 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta 1 (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154)      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Plcb1  Phospholipase C-beta1      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_disease inhibition of pathway modulated by 5-HT(2) receptor activation via atypical neuroleptics may lead to alterations in serotonergic signaling and schizophrenia 633577
gene_expression expression levels significantly reduced in old neuronal striata 1299009
gene_expression expressed in brain 1299007
gene_pathway mediates intracellular Ca(2+), activation of calcineurin and inhibition of Ca(v)1.2 L-type Ca(2+) currents via upstream stimulation of 5-HT(2) receptors in prefrontal neurons 633577
gene_pathway may be involved in oxidative stress pathways 1299008
gene_process may play a role in myoblast differentiation 1299010
gene_transcript produced by alternative splicing of 5.4 kb transcript precursor 1299007