Pfkl (phosphofructokinase, liver type) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pfkl (phosphofructokinase, liver type) Rattus norvegicus
Analyze
Symbol: Pfkl
Name: phosphofructokinase, liver type
RGD ID: 3311
Description: Enables several functions, including 6-phosphofructokinase activity; anion binding activity; and identical protein binding activity. Involved in fructose 1,6-bisphosphate metabolic process; fructose 6-phosphate metabolic process; and glycolytic process. Predicted to be located in cytosol. Predicted to be part of 6-phosphofructokinase complex. Predicted to be active in membrane. Orthologous to human PFKL (phosphofructokinase, liver type); PARTICIPATES IN glycolysis pathway; glycolysis/gluconeogenesis pathway; fructose and mannose metabolic pathway; INTERACTS WITH (-)-epigallocatechin 3-gallate; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 6-phosphofructokinase type B; 6-phosphofructokinase, liver type; ATP-dependent 6-phosphofructokinase, liver type; ATP-PFK; PFK-B; PFK-L; phosphofructo-1-kinase isozyme B; phosphofructokinase 1; phosphofructokinase, liver; phosphofructokinase, liver, B-type; phosphohexokinase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82010,663,907 - 10,685,967 (+)NCBIGRCr8
mRatBN7.22010,664,285 - 10,686,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2010,664,272 - 10,686,315 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2011,363,758 - 11,385,830 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02010,724,657 - 10,746,730 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02011,196,584 - 11,218,579 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02011,393,860 - 11,415,889 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,393,877 - 11,415,882 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02013,563,748 - 13,585,941 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,009,359 - 11,032,511 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12011,009,585 - 11,032,737 (+)NCBI
Celera2012,170,125 - 12,192,155 (+)NCBICelera
RH 3.4 Map20140.5RGD
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRatautistic disorder  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
PfklRatautoimmune polyendocrine syndrome type 1  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: Polyglandular autoimmune syndrome and type 1ClinVarPMID:28492532
PfklRatcataract 9 multiple types  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: Cataract 9 multiple typesClinVarPMID:28492532
PfklRatdevelopmental and epileptic encephalopathy 30  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 30ClinVarPMID:28492532 and PMID:8596935
PfklRathomocystinuria  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: HYPERHOMOCYSTEINEMIA more ...ClinVarPMID:10338090 more ...
PfklRatNeurodevelopmental Disorders  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
PfklRatprimary ciliary dyskinesia  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: Primary ciliary dyskinesiaClinVarPMID:28492532
PfklRatprogressive myoclonus epilepsy  ISOPFKL (Homo sapiens)8554872ClinVar Annotator: match by term: Progressive myoclonic epilepsyClinVarPMID:28492532 and PMID:8596935

1 to 20 of 147 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRat(-)-epigallocatechin 3-gallate increases expressionEXP 6480464epigallocatechin gallate results in increased expression of PFKL mRNACTDPMID:16988119
PfklRat1,2-dimethylhydrazine multiple interactionsISOPfkl (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of PFKL mRNACTDPMID:22206623
PfklRat1,4-benzoquinone increases expressionISOPFKL (Homo sapiens)6480464quinone results in increased expression of PFKL proteinCTDPMID:30448556
PfklRat1,4-benzoquinone multiple interactionsISOPFKL (Homo sapiens)6480464[HIF1A protein co-treated with quinone] results in increased expression of PFKL proteinCTDPMID:30448556
PfklRat1-[4,4-bis(4-fluorophenyl)butyl]-4-[4-chloro-3-(trifluoromethyl)phenyl]-4-piperidinol multiple interactionsISOPFKL (Homo sapiens)6480464Penfluridol binds to and results in decreased activity of PFKL protein more ...CTDPMID:35530161
PfklRat1-[4,4-bis(4-fluorophenyl)butyl]-4-[4-chloro-3-(trifluoromethyl)phenyl]-4-piperidinol increases response to substanceISOPFKL (Homo sapiens)6480464PFKL protein results in increased susceptibility to PenfluridolCTDPMID:35530161
PfklRat1-[4,4-bis(4-fluorophenyl)butyl]-4-[4-chloro-3-(trifluoromethyl)phenyl]-4-piperidinol decreases activityISOPFKL (Homo sapiens)6480464Penfluridol results in decreased activity of PFKL proteinCTDPMID:35530161
PfklRat1-chloro-2,4-dinitrobenzene affects bindingISOPFKL (Homo sapiens)6480464Dinitrochlorobenzene binds to PFKL proteinCTDPMID:32991956
PfklRat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of PFKL mRNA and Estradiol affects the expression of PFKL proteinCTDPMID:32145629
PfklRat1H-pyrazole decreases expressionISOPfkl (Mus musculus)6480464pyrazole results in decreased expression of PFKL mRNACTDPMID:17945193
PfklRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:21394737
PfklRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464AHR protein alternative form affects the reaction [Tetrachlorodibenzodioxin results in decreased expression of PFKL mRNA]CTDPMID:21215274
PfklRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOPfkl (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of PFKL mRNACTDPMID:15667827 more ...
PfklRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPfkl (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PFKL mRNACTDPMID:21570461
PfklRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOPFKL (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of PFKL mRNACTDPMID:20106945 and PMID:21632981
PfklRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PFKL mRNACTDPMID:21215274
PfklRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of PFKL mRNACTDPMID:21346803
PfklRat3,3',4,4',5-pentachlorobiphenyl increases expressionEXP 64804643 more ...CTDPMID:23196670
PfklRat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of PFKL mRNACTDPMID:36041667
PfklRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of PFKL mRNACTDPMID:24780913

1 to 20 of 147 rows

Biological Process
1 to 20 of 39 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRatcanonical glycolysis involved_inIBAMGI:97548 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfklRatfructose 1,6-bisphosphate metabolic process  IDA 2302736 RGD 
PfklRatfructose 1,6-bisphosphate metabolic process  IDA 2302790 RGD 
PfklRatfructose 1,6-bisphosphate metabolic process involved_inIEAUniProtKB:P17858 and ensembl:ENSP000002698481600115GO_REF:0000107EnsemblGO_REF:0000107
PfklRatfructose 1,6-bisphosphate metabolic process involved_inIBAFB:FBgn0003071 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfklRatfructose 1,6-bisphosphate metabolic process involved_inISOPFKL (Homo sapiens)1624291 PMID:22923583RGDPMID:22923583
PfklRatfructose 6-phosphate metabolic process  IDA 2301237 RGD 
PfklRatfructose 6-phosphate metabolic process  IDA 2302790 RGD 
PfklRatfructose 6-phosphate metabolic process involved_inIEAUniProtKB:P17858 and ensembl:ENSP000002698481600115GO_REF:0000107EnsemblGO_REF:0000107
PfklRatfructose 6-phosphate metabolic process involved_inIEAInterPro:IPR0229531600115GO_REF:0000002InterProGO_REF:0000002
PfklRatfructose 6-phosphate metabolic process acts_upstream_of_or_withinIEAUniProtKB:P12382 and ensembl:ENSMUSP000000205221600115GO_REF:0000107EnsemblGO_REF:0000107
PfklRatfructose 6-phosphate metabolic process acts_upstream_of_or_withinISOPfkl (Mus musculus)1624291 PMID:8172601 and PMID:9287040RGDPMID:8172601 and PMID:9287040
PfklRatfructose 6-phosphate metabolic process involved_inIBAFB:FBgn0003071 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfklRatfructose 6-phosphate metabolic process involved_inISOPFKL (Homo sapiens)1624291 PMID:6227635 more ...RGDPMID:6227635 more ...
PfklRatfructose 6-phosphate metabolic process  IDA 2301241 RGD 
PfklRatfructose 6-phosphate metabolic process  IDA 2302736 RGD 
PfklRatfructose 6-phosphate metabolic process  IDA 2301230 RGD 
PfklRatfructose 6-phosphate metabolic process  IDA 2301234 RGD 
PfklRatfructose 6-phosphate metabolic process  IDA 2301239 RGD 
PfklRatglycolytic process  IDA 2301239 RGD 
1 to 20 of 39 rows

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRat6-phosphofructokinase complex part_ofISOPFKL (Homo sapiens)1624291 PMID:6444532 and PMID:6444721RGDPMID:6444532 and PMID:6444721
PfklRat6-phosphofructokinase complex part_ofIEAUniProtKB:P17858 and ensembl:ENSP000002698481600115GO_REF:0000107EnsemblGO_REF:0000107
PfklRat6-phosphofructokinase complex part_ofIBACGD:CAL0000186427 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfklRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
PfklRatcytoplasm located_inIEAUniRule:UR0001662591600115GO_REF:0000104UniProtGO_REF:0000104
PfklRatcytoplasm located_inIEAInterPro:IPR0091611600115GO_REF:0000002InterProGO_REF:0000002
PfklRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
PfklRatcytosol located_inIEAUniProtKB:P12382 and ensembl:ENSMUSP000000205221600115GO_REF:0000107EnsemblGO_REF:0000107
PfklRatcytosol located_inISOPfkl (Mus musculus)1624291 PMID:2521854RGDPMID:2521854
PfklRatmembrane is_active_inIBAPANTHER:PTN000344223 and UniProtKB:P082371600115GO_REF:0000033GO_CentralGO_REF:0000033
1 to 10 of 10 rows

Molecular Function
1 to 20 of 51 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRat6-phosphofructokinase activity  TAS 633699 RGD 
PfklRat6-phosphofructokinase activity  IDA 2302790 RGD 
PfklRat6-phosphofructokinase activity  IDA 2301237 RGD 
PfklRat6-phosphofructokinase activity  IDA 2301239 RGD 
PfklRat6-phosphofructokinase activity  IDA 2302736 RGD 
PfklRat6-phosphofructokinase activity enablesIEAUniProtKB:P12382 and ensembl:ENSMUSP000000205221600115GO_REF:0000107EnsemblGO_REF:0000107
PfklRat6-phosphofructokinase activity enablesIEAUniRule:UR0001662591600115GO_REF:0000104UniProtGO_REF:0000104
PfklRat6-phosphofructokinase activity enablesIEARHEA:161091600115GO_REF:0000116RHEAGO_REF:0000116
PfklRat6-phosphofructokinase activity enablesIEAUniProtKB:P17858 and ensembl:ENSP000002698481600115GO_REF:0000107EnsemblGO_REF:0000107
PfklRat6-phosphofructokinase activity enablesIBACGD:CAL0000186427 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
PfklRat6-phosphofructokinase activity enablesISOPfkl (Mus musculus)1624291 PMID:6450202 more ...RGDPMID:6450202 more ...
PfklRat6-phosphofructokinase activity enablesIEAEC:2.7.1.111600115GO_REF:0000003UniProtGO_REF:0000003
PfklRat6-phosphofructokinase activity enablesIEAInterPro:IPR000023 more ...1600115GO_REF:0000002InterProGO_REF:0000002
PfklRat6-phosphofructokinase activity enablesISOPFKL (Homo sapiens)1624291 PMID:22923583 more ...RGDPMID:22923583 more ...
PfklRat6-phosphofructokinase activity contributes_toISOPFKL (Homo sapiens)1624291 PMID:6227635RGDPMID:6227635
PfklRat6-phosphofructokinase activity  IDA 2301234 RGD 
PfklRat6-phosphofructokinase activity  IDA 2301230 RGD 
PfklRat6-phosphofructokinase activity  IDA 1599371 RGD 
PfklRat6-phosphofructokinase activity  IDA 2301241 RGD 
PfklRatATP binding  IDA 2301230 RGD 
1 to 20 of 51 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRatglycolysis pathway   IDA 2302851 RGD 
PfklRatglycolysis pathway   IDA 2302790 RGD 
PfklRatglycolysis pathway   TAS 2302736 RGD 
PfklRatglycolysis/gluconeogenesis pathway  IDA 2301239 RGD 
PfklRatglycolysis/gluconeogenesis pathway  IDA 2301230 RGD 

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRatfructose and mannose metabolic pathway  IEA 6907045 KEGGrno:00051
PfklRatgalactose metabolic pathway  IEA 6907045 KEGGrno:00052
PfklRatgluconeogenesis pathway   IEA 6907045 KEGGrno:00010
PfklRatglycolysis pathway   IEA 6907045 KEGGrno:00010
PfklRatglycolysis/gluconeogenesis pathway  IEA 6907045 KEGGrno:00010
PfklRatpentose phosphate pathway   IEA 6907045 KEGGrno:00030

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PfklRathypoxia inducible factor pathway   ISOPFKL (Homo sapiens)6484113 PIDPID:200202

1 to 20 of 23 rows
#
Reference Title
Reference Citation
1. Key enzymes of carbohydrate metabolism as targets of the 11.5-kDa Zn(2+)-binding protein (parathymosin). Brand IA and Heinickel A, J Biol Chem. 1991 Nov 5;266(31):20984-9.
2. Inactivation of phosphofructokinase by glucagon in rat hepatocytes. Castano JG, etal., J Biol Chem. 1979 Jul 10;254(13):5576-9.
3. Quantification of liver and kidney phosphofructokinase by radioimmunoassay in fed, starved and alloxan-diabetic rats. Donofrio JC, etal., Biochem J. 1984 Dec 1;224(2):541-7.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Critical switch of the metabolic fluxes by phosphofructo-2-kinase:fructose-2,6-bisphosphatase. A kinetic model. Goldstein BN and Maevsky AA, FEBS Lett 2002 Dec 18;532(3):295-9.
7. Relationships between concentration of hepatic intermediary metabolites and induction of the key glycolytic enzymes in vivo. Gunn JM and Taylor CB, Biochem J. 1973 Nov;136(3):455-65.
8. Rat-liver-type phosphofructokinase mRNA. Structure, tissue distribution and regulation. Hotta K, etal., Eur J Biochem 1991 Dec 5;202(2):293-8.
9. Stimulation of glycolysis and accumulation of a stimulator of phosphofructokinase in hepatocytes incubated with vasopressin. Hue L, etal., Biochem J. 1981 Mar 15;194(3):1023-6.
10. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
11. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. Control in vivo of rat liver phosphofructokinase by glucagon and nutritional changes. Nieto A and Castano JG, Biochem J. 1980 Mar 15;186(3):953-7.
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
17. GOA pipeline RGD automated data pipeline
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
20. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
1 to 20 of 23 rows
PMID:2521854   PMID:2960695   PMID:6227635   PMID:6444532   PMID:6444721   PMID:6451249   PMID:7825568   PMID:8172601   PMID:8780720   PMID:9287040   PMID:16780588   PMID:19056867  
PMID:19199708   PMID:19946888   PMID:20458337   PMID:22871113   PMID:22923583   PMID:23376485   PMID:25416956   PMID:30053369  



Pfkl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82010,663,907 - 10,685,967 (+)NCBIGRCr8
mRatBN7.22010,664,285 - 10,686,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2010,664,272 - 10,686,315 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2011,363,758 - 11,385,830 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02010,724,657 - 10,746,730 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02011,196,584 - 11,218,579 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02011,393,860 - 11,415,889 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,393,877 - 11,415,882 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02013,563,748 - 13,585,941 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,009,359 - 11,032,511 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12011,009,585 - 11,032,737 (+)NCBI
Celera2012,170,125 - 12,192,155 (+)NCBICelera
RH 3.4 Map20140.5RGD
Cytogenetic Map20p12NCBI
PFKL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,300,053 - 44,327,373 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,300,051 - 44,327,376 (+)EnsemblGRCh38hg38GRCh38
GRCh372145,719,936 - 45,747,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,544,358 - 44,571,689 (+)NCBINCBI36Build 36hg18NCBI36
Build 342144,544,357 - 44,571,684NCBI
Celera2130,825,177 - 30,852,489 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,062,995 - 31,117,561 (+)NCBIHuRef
CHM1_12145,280,766 - 45,308,102 (+)NCBICHM1_1
T2T-CHM13v2.02142,654,110 - 42,681,430 (+)NCBIT2T-CHM13v2.0
Pfkl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,822,781 - 77,845,641 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,822,781 - 77,845,917 (-)EnsemblGRCm39 Ensembl
GRCm381077,986,947 - 78,009,807 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,986,947 - 78,010,083 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,449,692 - 77,472,541 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,390,400 - 77,412,878 (-)NCBIMGSCv36mm8
Celera1079,025,947 - 79,048,797 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Pfkl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540741,131,022 - 41,145,394 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540741,131,022 - 41,145,392 (-)NCBIChiLan1.0ChiLan1.0
PFKL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,307,925 - 40,334,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,158,060 - 35,184,538 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02130,557,576 - 30,584,231 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12143,857,293 - 43,878,380 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2143,857,052 - 43,878,380 (+)Ensemblpanpan1.1panPan2
PFKL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,153,638 - 38,178,741 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3138,156,451 - 38,178,507 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3137,313,615 - 37,335,899 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03137,703,738 - 37,726,021 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3137,703,734 - 37,726,017 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13137,570,896 - 37,593,253 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03137,551,678 - 37,573,926 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03138,049,651 - 38,071,966 (+)NCBIUU_Cfam_GSD_1.0
Pfkl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497137,350,253 - 37,373,807 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650093,854 - 117,653 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650094,016 - 117,598 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PFKL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13207,167,281 - 207,191,671 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113207,167,287 - 207,191,688 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,047,266 - 217,071,450 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PFKL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,035,409 - 88,063,376 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl288,035,347 - 88,063,442 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605416,150,512 - 16,178,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pfkl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474529,823,317 - 29,842,881 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474529,826,202 - 29,842,859 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Pfkl
306 total Variants

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:56
Interacting mature miRNAs:65
Transcripts:ENSRNOT00000001625
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
631265Iresp1Immunoglobin response QTL18.3blood anti-double stranded DNA antibody amount (VT:0004762)serum anti-DNA antibody level (CMO:0001533)20903971913461775Rat

1 to 10 of 24 rows
RH94598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22010,686,160 - 10,686,250 (+)MAPPERmRatBN7.2
Rnor_6.02011,415,726 - 11,415,815NCBIRnor6.0
Rnor_5.02013,585,778 - 13,585,867UniSTSRnor5.0
RGSC_v3.42011,032,357 - 11,032,446UniSTSRGSC3.4
Celera2012,192,001 - 12,192,090UniSTS
RH 3.4 Map20140.5UniSTS
Cytogenetic Map20p12UniSTS
RH130425  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82010,685,680 - 10,685,884 (+)Marker Load Pipeline
mRatBN7.22010,686,036 - 10,686,240 (+)MAPPERmRatBN7.2
Rnor_6.02011,415,603 - 11,415,805NCBIRnor6.0
Rnor_5.02013,585,655 - 13,585,857UniSTSRnor5.0
RGSC_v3.42011,032,233 - 11,032,436UniSTSRGSC3.4
Celera2012,191,876 - 12,192,080UniSTS
Cytogenetic Map20p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000001625   ⟹   ENSRNOP00000001625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2010,664,272 - 10,686,315 (+)Ensembl
Rnor_6.0 Ensembl2011,393,877 - 11,415,882 (+)Ensembl
RefSeq Acc Id: NM_013190   ⟹   NP_037322
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82010,663,965 - 10,685,958 (+)NCBI
mRatBN7.22010,664,318 - 10,686,315 (+)NCBI
Rnor_6.02011,393,887 - 11,415,880 (+)NCBI
Rnor_5.02013,563,748 - 13,585,941 (+)NCBI
RGSC_v3.42011,009,359 - 11,032,511 (+)RGD
Celera2012,170,125 - 12,192,155 (+)RGD
Sequence:
RefSeq Acc Id: XM_008772798   ⟹   XP_008771020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82010,663,907 - 10,685,967 (+)NCBI
mRatBN7.22010,664,286 - 10,686,324 (+)NCBI
Rnor_6.02011,393,860 - 11,415,889 (+)NCBI
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_037322 (Get FASTA)   NCBI Sequence Viewer  
  XP_008771020 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH61791 (Get FASTA)   NCBI Sequence Viewer  
  CAA41674 (Get FASTA)   NCBI Sequence Viewer  
  EDL97066 (Get FASTA)   NCBI Sequence Viewer  
  EDL97067 (Get FASTA)   NCBI Sequence Viewer  
  EDL97068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001625
  ENSRNOP00000001625.3
  ENSRNOP00000100786
GenBank Protein P30835 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_037322   ⟸   NM_013190
- UniProtKB: P30835 (UniProtKB/Swiss-Prot),   Q6P783 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771020   ⟸   XM_008772798
- Peptide Label: isoform X1
- UniProtKB: Q6P783 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001625   ⟸   ENSRNOT00000001625
Phosphofructokinase

Name Modeler Protein Id AA Range Protein Structure
AF-P30835-F1-model_v2 AlphaFold P30835 1-780 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701491
Promoter ID:EPDNEW_R12014
Type:initiation region
Name:Pfkl_1
Description:phosphofructokinase, liver type
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02011,393,886 - 11,393,946EPDNEW


1 to 34 of 34 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-4273 BioCyc
BioCyc Pathway ANAGLYCOLYSIS-PWY [glycolysis III (from glucose)] BioCyc
BioCyc Pathway Image ANAGLYCOLYSIS-PWY BioCyc
Ensembl Genes ENSRNOG00000001214 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001625 ENTREZGENE
  ENSRNOT00000001625.6 UniProtKB/Swiss-Prot
  ENSRNOT00000147989 ENTREZGENE
Gene3D-CATH 3.40.50.450 UniProtKB/Swiss-Prot
  3.40.50.460 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5598160 IMAGE-MGC_LOAD
InterPro 6-Pfructokinase_euk UniProtKB/Swiss-Prot
  ATP_PFK UniProtKB/Swiss-Prot
  PFK_vert-type UniProtKB/Swiss-Prot
  Phosphofructokinase_CS UniProtKB/Swiss-Prot
  Phosphofructokinase_dom UniProtKB/Swiss-Prot
  PKF_sf UniProtKB/Swiss-Prot
KEGG Report rno:25741 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72281 IMAGE-MGC_LOAD
NCBI Gene 25741 ENTREZGENE
PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE, LIVER TYPE UniProtKB/Swiss-Prot
  PHOSPHOFRUCTOKINASE UniProtKB/Swiss-Prot
Pfam PFK UniProtKB/Swiss-Prot
PhenoGen Pfkl PhenoGen
PIRSF ATP_PFK_euk UniProtKB/Swiss-Prot
PRINTS PHFRCTKINASE UniProtKB/Swiss-Prot
PROSITE PHOSPHOFRUCTOKINASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001214 RatGTEx
Superfamily-SCOP SSF53784 UniProtKB/Swiss-Prot
TIGR TC228648
UniProt A6JK50_RAT UniProtKB/TrEMBL
  A6JK51_RAT UniProtKB/TrEMBL
  A6JK52_RAT UniProtKB/TrEMBL
  P30835 ENTREZGENE, UniProtKB/Swiss-Prot
  Q6P783 ENTREZGENE, UniProtKB/TrEMBL
1 to 34 of 34 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Pfkl  phosphofructokinase, liver type  Pfkl  phosphofructokinase, liver  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-17 Pfkl  phosphofructokinase, liver  Pfkl  phosphofructokinase, liver, B-type  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Pfkl  Phosphofructokinase, liver, B-type      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_domains homodimer with each of its subunits contains an N-terminal kinase domain and a C-terminal bisphosphatase domain 633699
gene_regulation regulated by cyclic AMP-dependent protein kinase (cAMP-PK) 633699